BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488629
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17620.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Plant nuc... 2013 0.0
> AT5G17620.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Plant nuclear
matrix 1 (InterPro:IPR010604); Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5805755-5808561
REVERSE LENGTH=1275
Length=1275
Score = 2013 bits (1090), Expect = 0.0
Identities = 1185/1230 (96%), Gaps = 9/1230 (1%)
Strand=Plus/Plus
Query 1 ACGAGGCTAGTGTCAGATCTCGAGATTTGAATCGGTGTTGAAGCCGTCGCCGGAAT-TGG 59
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 36 ACGAGACTAGTGTCAGATCTCGAGATTTGAATCGGTGTTGAAGCCGTCGCCAGAATCAGT 95
Query 60 TGGAGAAGGAAAATGGCGGCGAAGCAAATGGAAGAGATACAGAAGAAGCTAGGGCTGCTT 119
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 96 TGGA-TAGGAAAATGGCGGCGAAGCAAATGGAAGAGATACAGAAGAAGCTACGGCTGCTA 154
Query 120 AGTTACCCTAGGGCAAATGCTCCAGCTCAGTCTCTCCTCTTCGCTGGGATGGAACGTTAT 179
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 155 AGTTACCCTAGGGCAAATGCTCCAGCTCAGTCTCTCCTCTTCGCCGGGATGGAACGTTAT 214
Query 180 GCTCTTCTCGAATGGCTCTTTTTCAAGTTATTAGGTGATAAATCACCTTTCTCACAGCAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 GCTCTTCTCGAATGGCTCTTTTTCAAGTTATTAGGTGATAAATCACCTTTCTCACAGCAA 274
Query 240 AATCTCCAAGGAGATGCTGGAGTTCGTGATGAAGAAACTGTTCGTATTCAATATTTGGCA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 AATCTCCAAGGAGATGCTGGAGTTCGTGATGAAGAAACTGTTCGTATTCAATATTTGGCA 334
Query 300 GAGATCGCAAAGTTTTTGGGGTTTACACCAACTGTAGACATAGAAGCCATTCAAGTACAT 359
||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||
Sbjct 335 GAGATTGCAAAGTTTTTGGGGATTACACCAACTGTAGACATTGAAGCCATTCAAGGACAT 394
Query 360 GGAACCTATGAAGATCGGATGGAAATGCTTCGCAATATTGTTGATTTAGTGGAGGCAAGC 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 395 GGAACCTATGAAGATCGGATGGAAATGCTTCGCAATATTGTTGATTTAGTGGAGGCGAGC 454
Query 420 CTCTTCTCAGATAATCAAGAATGGAGTATTGATGAGCAAGTTGCCAAAGATATCCAGCTC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 455 CTCTTCTCAGATAATCAAGAATGGAGTATTGATGAGCAAGTTGCCAAAGATATTCAGCTC 514
Query 480 ATAGATGCTATTGCAGAGAGACAGTCTCTTATATTTTCTGAGGAATGCAAACTGTTCCCC 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 ATAGATGCTATTGCAGAGAGACAGTCTCTTATATTTTCTGAGGAATGCAAACTGTTCCCT 574
Query 540 GCTGATGTGCAGATCCAGTCGATATATCCATTACCAGATGTTTCAGAACTGGAGACAAAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 GCTGATGTGCAGATCCAGTCGATATATCCATTACCAGATGTTTCAGAACTGGAGACAAAA 634
Query 600 CTTTCAGAACAGGCCAAGATTCTCTCTAATCTTCAACAGAAAGTCGATGACTTGGCAGCA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 CTTTCAGAACAGGCCAAGATTCTCTCTAATCTTCAACAGAAAGTCGATGACTTGGCAGCA 694
Query 660 AAGCATGCTTACAACCCAGATGAAGAATATACTGAAGTGGAATCTCAACTAAGGGCTTGT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 695 AAGCATGCTTACAACCCAGATGAAGAATATACTGAAGTGGAATCTCAACTAAGGGCTCGT 754
Query 720 TTAGAATCGTTTCTTGAAACTGCTAGGGCATTCAATACAATCTACACAAAGGAAATTCGT 779
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 755 TTAGAATCGTTTCTTGAAACAGCTAGGGCATTCAATACAATCTACACAAAGGAAATTCGT 814
Query 780 CCATGGACGCATATGATGGAAGTGCCTCAGCTTCATGGTTTTGGTCCTGCTGCAAACCGT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CCATGGACGCATATGATGGAAGTGCCTCAGCTTCATGGTTTTGGTCCTGCTGCAAACCGT 874
Query 840 TTACTAGAAGCATATAATATGCTTTTAAAGTTCCTAGGGAACTTGAAGAACCTAAGAGAC 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 TTACTAGAAGCATATAATATGCTTTTAAAGTTCCTAGGGAACTTGAAGAACCTAAGAGAC 934
Query 900 TCACATGCAGCACTTTCAATTGGATCATCGGGGACAGTTGCTGGAGAGCCGTCTTCTGTA 959
||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||
Sbjct 935 TCACATGCAGCACTTTCGATTGGATCCTCGGGGACAGTTGCTGGAGAGCCATCCTCTGTA 994
Query 960 ACCAGAATCGTATCTGACTGTGAAGCTGCATTAACTGTTCTCAATCGAGATCTTGGAATC 1019
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 ACCAGAATCGTATCCGACTGTGAAGCTGCATTAACTGTTCTCAATCGAGATCTTGGAATC 1054
Query 1020 CTCTCGGCTTCTATTGCTCGTGAGCAAGGTGAGCGTCTATAACCGTCTCGAGTTGACCAC 1079
|||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||
Sbjct 1055 CTCTCGGCTTCTATTGCTCGTGAGCAAGGTGAGCGTCTTTAACTGTCTTGAGTTGACCAC 1114
Query 1080 ACTTGA-AAAGGGTTCTACTCCATGAATGTGTTGACTTGTATTTGGTAGAAATCATTTTA 1138
|||||| ||||||||| |||||||||||||| ||| ||||||| | ||||||||||||||
Sbjct 1115 ACTTGATAAAGGGTTCAACTCCATGAATGTGATGAGTTGTATTCGTTAGAAATCATTTTA 1174
Query 1139 GGGGTGTAT-TTTA-ATCTCAAGGATTGTATAACTCTTTTCAGCACTTTTT-GCTTCTGT 1195
||| || || ||| |||||||| |||||| | |||||||||||||||||| ||||||||
Sbjct 1175 GGG-TGGATGTTTTGATCTCAAGAATTGTA-A-CTCTTTTCAGCACTTTTTTGCTTCTGT 1231
Query 1196 TATTTAACCAAATCTAATCTAAAGGTAAAA 1225
| ||||||||||| |||||||||||||||
Sbjct 1232 CAATTAACCAAATCAAATCTAAAGGTAAAA 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60190453455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5