BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488635
Length=1831
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17700.1 | Symbols: | MATE efflux family protein | chr5:583... 2425 0.0
> AT5G17700.1 | Symbols: | MATE efflux family protein | chr5:5830581-5833901
REVERSE LENGTH=2116
Length=2116
Score = 2425 bits (1313), Expect = 0.0
Identities = 1629/1773 (92%), Gaps = 55/1773 (3%)
Strand=Plus/Plus
Query 23 TCGGTTTCTCCGACTCTTTCCACTTGAACCTAGCTTAagagagaaaatcaaagagggaga 82
||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||
Sbjct 115 TCGGTTTCTCCGACTCTTTCCCCTTGAACCTAGCTTAACAGAGAAAATCAAAGAGAGAGG 174
Query 83 aaaaatgagt--a-gaggtggagaaatggaagagagaCTGCTAAATGGGTCAGAGACAGA 139
|||||||||| | | |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 175 AAAAATGAGTGGAGGTGGTGGAGAAATGGAAGAGAGACTGTTAAATGGGTCAGAGACAGA 234
Query 140 ACAAAGGAGAGAGAGTCTCTACCTGAGAAAAAAGATTTGGAGTGAAGTAAGGAAGATGTG 199
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 235 ACAAAGGAGAGAGAGTCTCTACTTGAGAAAAAAGATTTGGAGTGAAGTAAGGAAGATGTG 294
Query 200 GAGAATTGCTTTACCATCAACTTTGTTCAGAGTGATGTCGTTTGGATGCGTGGTGGTGGC 259
|||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 295 GAGAATAGCTTTACCATCAACTTTGTTCAGAGTTATGTCGTTTGGATGCGTAGTGGTGGC 354
Query 260 TCAAGCCTTCATTGGCCACTCAAGTGAAACGGGTCTCGCTGCTTATGCTCTCCTTCAAAG 319
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 355 TCAAGCCTTCATTGGCCACTCCAGTGAAACGGGTCTCGCTGCTTATGCTCTCCTTCAAAG 414
Query 320 TACTTTCATTCGCTTCATCTACGGTATTATGGCAGGTATGTCAAGTGCGACAGAGACGTT 379
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CACTTTCATTCGCTTCATCTACGGTATTATGGCAGGTATGTCAAGTGCGACAGAGACGTT 474
Query 380 ATGTGGACAAGCATACGGAGCACAACAATACCGCATGATGGGGATATACTTACAACGTTC 439
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 475 ATGTGGACAAGCATACGGAGCAGAACAATACCACATGATGGGGATATACTTACAACGTTC 534
Query 440 TTGGATAGTAGACACCTTTATAGCCACTCTCTTCGTCCCTTTCATCGTCTTCGCGGGTCC 499
|||||||||||| |||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 535 TTGGATAGTAGATACCTTTATTGCAACTCTCTTCGTCCCTTTCATCGTCTTAGCGGGTCC 594
Query 500 CATTCTTCGGTTATTAGGCCAAAACGTTGTGATCACCGAGACAGTAGACGAGATCTACCC 559
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 595 CATTCTCCGGTTATTAGGCCAAAACGTTGTGATCTCCGAGACAGTAGACGAGATTTACCC 654
Query 560 ATGGGTCATCCCTTATCTCTACAGCCTCGTGTTCACTATGACAATGCAAATGTACCTCCA 619
||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 655 ATGGGTCATTCCTTATCTCTACAGCATCGTGTTCACCATGACAATGCAAATGTACCTCCA 714
Query 620 AGCGCAGATGAGAAACGCCATCATTGGCATTCTCTCGACCCTAGCCTTGGTATTGGACAT 679
||||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 715 AGCGCAGATGAAAAACGCCATCATAGGCATTCTTTCGACCCTAGCCTTGGTCTTGGACAT 774
Query 680 TGCGGCCACGTGGTGGTACGTGAGCGTGATGGGGATGGGGATCCATGGAGCGCTTCTAGG 739
||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||
Sbjct 775 TGCGGCCACGTGGTGGTGCGTAAGCGTGATGGGGATGGGGATCCATGGTGCGCTTCTAGG 834
Query 740 GCTTAATATAAGCTCATGGTCGGTGGTGATAGCCGAGTTTGTATATGTGTTTGGAGGGTG 799
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 835 GCTTAATATAAGCTCATGGTCGGTGGCCATAGCCGAGTTTGTATATGTGTTTGGAGGGTG 894
Query 800 GTGCCCGCATACTTGGACCGGCTTTAGCACTGCTGCTTTTGTTGATCTTATTCCCATGCT 859
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 895 GTGCCCGCATACTTGGACCGGCTTTAGCACTGCTGCTTTTCTTGATCTTATTCCCATGCT 954
Query 860 CAAGTTATCCATTTCATCCGGTTTCATGCTCTGCTTAGAGTACTGGTATATGAGCATCAT 919
|||||||||||| || ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 955 CAAGTTATCCATATCCTCCGGCTTCATGCTTTGCTTAGAGTACTGGTATATGAGCATCAT 1014
Query 920 CGTCTTGATGTCTGGATATGCAAAGGATGCGAATATCGCAATTTCCGCTTTCTCCATATG 979
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TGTCTTGATGTCTGGATATGCAAAGGATGCGAATATCGCAATTTCCGCTTTCTCCATATG 1074
Query 980 CCAATATATCTACTCATGGGAGATGAACATTTGCTTTGGCTTGTTGGGTGCAGCATGTGT 1039
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1075 CCAATATATCTACTCATGGGAGATGAACATATGCTTTGGCTTGATGGGTGCAGCATGTGT 1134
Query 1040 ACGAGTGGCGAATGAATTGGGAAAAGGCGATGCGGATGCTGTGAGATTCTCGATAAAAGT 1099
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1135 ACGAGTGGCGAATGAATTGGGAAAAGGCGATGCGGATGCGGTGAGATTCTCGATAAAAGT 1194
Query 1100 GGTACTTGTGGTCTCAGCGGTGATCGGTGTGATATGTTCCGCTCTTTGCCTAGCGTTTGG 1159
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GGTGCTTGTGGTATCAGCGGTGATCGGTGTGATATGTTCCGCTCTTTGCCTAGCGTTTGG 1254
Query 1160 CGGTCAGATTTCGTATTTGTTCTCCGATAGCCCTGCAGTTTCGGATGCAGTCTCTGATCT 1219
|||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||
Sbjct 1255 CGGTCAGATTTCGTATTTGTTCTCTGATAGCCAAGCAGTTTCGGATGCAGTAGCTGATCT 1314
Query 1220 CTCCCTCGTCCTTAGCATATCTATACTCTTCAACATCATCCAGCCCATTCTCTCTGGGGT 1279
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1315 CTCCATCGTCCTTAGCATATCTATACTCTTCAACATCATCCAGCCCATTCTATCTGGGGT 1374
Query 1280 AGCAATTGGAGCAGGGATGCAGAGTATGGTAGCATTTGTGAACTTAGCATCATATTATGC 1339
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1375 AGCAATTGGAGCAGGGATGCAGAGTATGGTAGCATTAGTGAACTTAGCATCTTATTATGC 1434
Query 1340 AATTGGTGTTCCTTTGGGTGTCCTCCTTATATACGTTTTCAATTTTGGTATTAAGGGACT 1399
||||||||||||||| |||||||||||| | ||||||||||||||||| |||||||||||
Sbjct 1435 AATTGGTGTTCCTTTAGGTGTCCTCCTTGTTTACGTTTTCAATTTTGGGATTAAGGGACT 1494
Query 1400 CTGGTCTGGAATGTTGGCTGGAGTTGGTGTACAAACGTTGATATTGTGTTATGTTATTTA 1459
|||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1495 CTGGTCCGGAATGTTGGCTGGAGTTGGTATCCAAACGTTGATATTGTGTTATGTTATTTA 1554
Query 1460 CAAAACTGACTGGGAATTGGAGGTTATGAAGAC-AA--A-CG-A-G----CGT--A-T-G 1505
|||||||||||||||||||||||||| |||||| || | || | | ||| | |
Sbjct 1555 CAAAACTGACTGGGAATTGGAGGTTAAGAAGACAAACGAGCGTATGAAAACGTGGACTCT 1614
Query 1506 AAA---A-C-G-TGGAC--T---CTA-AAT-T-TA-AAGAGATGAAGAGAGGAAGTGAAT 1550
||| | | | || || | ||| || | | ||||||||||||||| |||||||
Sbjct 1615 AAATTTACCTGCTGTACAATCGACTACTATCTCCACAAGAGATGAAGAGAGAAAGTGAAC 1674
Query 1551 GCACaaagaaatcaattttaagaagtattttaagaaaat-ttta-aaatattaaa-aatg 1607
|||| || | ||||| ||||| | |||||||||| | |||| ||| | ||| || |
Sbjct 1675 ATACAACTAAGTTAATTTAAAGAAATCTTTTAAGAAATTCTTTATAAA-A--AAAGAAAG 1731
Query 1608 aataatttaTG--G----GT-GTTATATTGTG-GTT---T----TTGAACTATCAGTGTT 1652
||||||||||| | || ||| | || || || | |||| |||| |||||
Sbjct 1732 AATAATTTATGTTGTATTGTGGTTGTGTTTTGCATTCCCTAAGAATGAAGTATCGGTGTT 1791
Query 1653 GAGATTGCATTATTAGGTTAATGCAACTCTGATAACTTTGaaaaaaaGTTAAGAAGGATG 1712
|||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||
Sbjct 1792 GAGATTGCATTATTAGGTTAATGCAACTCTCATAACTTTG-AAAAAGGTTAAGAAGGATG 1850
Query 1713 AACTTTTTCTTTTAGTCGGAGAAAAAGGTCGTT 1745
|||||||||||||| || ||||||||||| |||
Sbjct 1851 AACTTTTTCTTTTA-TCAGAGAAAAAGGTTGTT 1882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90611983725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5