BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488646
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17800.1 | Symbols: AtMYB56, MYB56 | myb domain protein 56 |... 1729 0.0
AT1G69560.1 | Symbols: MYB105, LOF2, ATMYB105 | myb domain prot... 135 7e-31
> AT5G17800.1 | Symbols: AtMYB56, MYB56 | myb domain protein 56
| chr5:5877189-5879331 FORWARD LENGTH=1290
Length=1290
Score = 1729 bits (936), Expect = 0.0
Identities = 1102/1177 (94%), Gaps = 31/1177 (3%)
Strand=Plus/Plus
Query 1 ATGAATCCAAATCTCCTTGAGAAAGATCTAAGAGGTAAGGAAACTACAAATGGGTCAAGA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 59 ATGAATCCAAATCTCCTTGAGAAAGATCTAAGAGGTAAGGAAACTACAAATGGGTCAATA 118
Query 61 AGATACGAAGAAGCAAACAACTTCGGATCTCTACCAAACTCACACACTGCTGCTTGTAAA 120
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 119 AGATACAAAGAAGCAAACAACTTCAGATCTCTACCAAACTCACACACTGCTGCTTGTAAA 178
Query 121 ACGTCACTCAACAACCTCTCTATCTCTAGAAACCTTTCTCATAACAAATCAGCCTCAGTC 180
|| ||||||||||||| ||||||||||||||||| | |||| ||||||||||||||||||
Sbjct 179 ACTTCACTCAACAACCCCTCTATCTCTAGAAACCATCCTCACAACAAATCAGCCTCAGTC 238
Query 181 TTGCAGTCGGAAGATGAACATGGGAAAGAGAGTGGTGAAAACGAAAAGAGTTTAGGAATG 240
||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||
Sbjct 239 TTGGAGTCGGAAGATGAACATGGGAACGAGAGAGGTGAAAACGAAAAGAGTTTAAGAATG 298
Query 241 AGGGGTAAAAGTGGAATTAACACAAAAGTATGCTCACGAGGACACTGGAGACCAACAGAA 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AGGGGCAAAAGTGGAATTAACACAAAAGTATGCTCACGAGGACACTGGAGACCAACAGAA 358
Query 301 GATGCTAAACTCAAGGAGCTTGTTGCCCAGTTTGGTCCCCAAAACTGGAACTTGATTGCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 359 GATGCTAAACTCAAGGAGCTTGTTGCCCAGTTTGGTCCCCAAAACTGGAACTTGATTTCT 418
Query 361 CACCACCTTCTTGGTAGATCAGGCAAGAGTTGTAGATTGAGATGGTTTAACCAACTAGAC 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AACCACCTTCTTGGTAGATCAGGCAAGAGTTGTAGATTGAGATGGTTTAACCAACTAGAC 478
Query 421 CCAAGGATTAACAAGAGAGCCTTCACGGAGGAAGAAGAGCTTAGGCTTTTAGCAGCTCAC 480
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 479 CCAAGGATTAACAAGAGAGCCTTCACGGAGGAAGAAGAGTTTAGGCTGTTAGCAGCTCAT 538
Query 481 CGAGCCTATGGCAACAAGTGGGCTTTGATCTCTCGTCTCTTCCCCGGACGTACCGATAAC 540
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 539 CGAGCCTATGGCAACAAGTGGGCTTTGATCTCTCGTCTCTTTCCAGGTCGTACCGATAAC 598
Query 541 GCCGTCAAGAACCACTGGCACGTCATCATGGCTCGACGGACTAGAGAAAGCCAACGACAA 600
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 599 GCTGTCAAGAACCATTGGCACGTCATCATGGCTCGACGGACTAGAGAAAGCCAAAGACAA 658
Query 601 CGTCAACAGCCTCCTCCGGCGCTGTCAAGAGACGCTGAAATGACGGTTTCGTCCTCTTGC 660
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 659 CGTCAACAGCCTCCTCCGACGTTGTCAAGAGACGCTGAAATGACGGTTTCGTCCTCTTGC 718
Query 661 CGCTACAATCAAGGTAAGTTCATCAATGGAGAAGATGATGAAGATGACGATGACGATGGC 720
|||||||||||||||||||||||||||| ||||||||| || || ||||| ||
Sbjct 719 CGCTACAATCAAGGTAAGTTCATCAATGAAGAAGATGACGACGA---CGATG----TG-- 769
Query 721 TCAGCTGTCTCTACTTGTACGACGGAGCTCTCTCTCACTCCGCCTTCTTCAGCTTACCAG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 TCAGCTGTCTCTACTTGTACGACGGAGCTCTCTCTCACTCCGCCTTCTTCAGCTTACCAG 829
Query 781 CCTCGCTTCTTTAATTACGATAATACCCTTGCATCAGGCAAAGATGGTCAGTGTGTGCAG 840
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 830 CCTCGCTTCTTTAATTACGATAGTACCCTTGCATCAGGCAAAGATGGTCAGTGTGTGCAG 889
Query 841 AGAGCAGAAGTAAATGGCATATATGGTAAAAAGATGGACCATCAAAATCACCACACAATC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 AGAGCAGAAGTAAATGGCATATATGGTAAAAAGATGGACCATCAAAATCACCACACAATC 949
Query 901 TCAGTCAGTGAAAGAAAGGTGGAGCTGAAGATGAAGAATGGCTATTACTTCTTTGATTTT 960
|||||||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||
Sbjct 950 TCAGTCAGTGAAAGAAAGGTGGAGATGAAGATGAGGAGTGGCTATTACTACTTTGATTTT 1009
Query 961 CTTGGAGTTGGAGCTTCTTGATTAATTAGTTGCAGAACTAGGGTTCAATGTTGAGGGAAT 1020
||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| |||
Sbjct 1010 CTTGGAGTTGGAGCTTCCTGATTAATTAGTTGCAGAGCTAGGGTTCAATGCTGAGG-AAT 1068
Query 1021 TGTGAGATAAAAAATGGCTTTAGTTTCTTCTATTTT--------A----GGCATGTTTGT 1068
|||||||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 1069 TGTGAGATAAGAAATGGCTTTAGTTTCTTCTATTTTTCCTGGTTAATTAGGCATGTTTGT 1128
Query 1069 TTAACATCTTAATTTGGGCTTTGGAAGAAGTTGGCTGGGGTATAAGGGAAAACTGGaaaa 1128
|||||||||||||||||| |||||||||||| || || ||| ||||||||||| ||||
Sbjct 1129 TTAACATCTTAATTTGGGTTTTGGAAGAAGTAAGC-GG--TATGAGGGAAAACTG-AAAA 1184
Query 1129 aaaaaatcaagaa---agaaataaaataaaaaGTTGA 1162
||||| ||| || |||| ||||||||||||||||
Sbjct 1185 CAAAAA-CAA-AACCTAGAAGTAAAATAAAAAGTTGA 1219
> AT1G69560.1 | Symbols: MYB105, LOF2, ATMYB105 | myb domain protein
105 | chr1:26157755-26159094 FORWARD LENGTH=1181
Length=1181
Score = 135 bits (73), Expect = 7e-31
Identities = 231/306 (75%), Gaps = 16/306 (5%)
Strand=Plus/Plus
Query 278 GAGGACACTGGAGACCAACAGAAGATGCTAAACTCAAGGAGCTTGTTGCCCAGT-T-TGG 335
||||||| ||||||||| | |||||| |||| ||||| || || || | || || | ||
Sbjct 320 GAGGACATTGGAGACCAGCTGAAGATACTAAGCTCAAAGAACTAGTCG-CC-GTCTACGG 377
Query 336 TCCCCAAAACTGGAACTTGATTGCTCACCACCTTCTTGGTAGATCAGGCAAGAGTTGTA- 394
||| |||||||||||| | || ||| | | || | || ||||| || || || ||||
Sbjct 378 TCCACAAAACTGGAACCTCATAGCTGAGAAGCTCCAAGGAAGATCCGGGAAAAGCTGTAG 437
Query 395 GATTGAGATGGTTTAACCAACTAGACCCAAGGATTAACAAGA-GAGCCTTCACGGAGGAA 453
| || |||||||||||||||||||||||||||| || | || |||||||||| ||||||
Sbjct 438 GCTT-CGATGGTTTAACCAACTAGACCCAAGGATAAATA-GAAGAGCCTTCACTGAGGAA 495
Query 454 GAAGA-GCTTAGGCTTTTAGCA-GCTCACCGAGCCT-ATGGCAACAAGTGGGCTTTGATC 510
||||| | ||||| | ||| ||||| | || | |||| ||||| ||||| ||||
Sbjct 496 GAAGAAGAG-AGGCTAAT-GCAAGCTCATAG-GCTTTATGGTAACAAATGGGCGATGATA 552
Query 511 TCTCGTCTCTTCCCCGG-ACGTACCGATAACGCCGTCAAGAACCACTGGCACGTCATCAT 569
| | || ||||| || | | || ||||| | || |||||||| ||||| || || ||
Sbjct 553 GCGAGGCTTTTCCCTGGTAGG-ACTGATAATTCTGTGAAGAACCATTGGCATGTTATAAT 611
Query 570 GGCTCG 575
||||||
Sbjct 612 GGCTCG 617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57027819120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5