BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488648
Length=1196
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17820.1 | Symbols: | Peroxidase superfamily protein | chr5... 1428 0.0
> AT5G17820.1 | Symbols: | Peroxidase superfamily protein | chr5:5887906-5890193
REVERSE LENGTH=1323
Length=1323
Score = 1428 bits (773), Expect = 0.0
Identities = 953/1041 (92%), Gaps = 8/1041 (1%)
Strand=Plus/Plus
Query 1 TATATATCTTAT-GTTCGATCTTAAAGGACTCACAACCCTTTCCACAAGAAG-TATAAAC 58
|||||| ||||| ||| ||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1 TATATACCTTATGGTT-GATCTTAAATGACTCACAACCCTTTCCACAAGAAGTTATAAAC 59
Query 59 CAATACATAGaaaaaaaaCTCCCAACCCCAAAAAATGATGAAGGGTGCCAAGTTTTCTTC 118
|||||||||| || |||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 60 CAATACATAG-AAGAAAACTTCCAACCCCAAAAAATGATGAAGGGTGCCAAGTTTTCATC 118
Query 119 TCTTCTTGTGCTTTTCTTTATTTTTCCAATCGCATTTGCTCAACTGAGAGTCGGGTTTTA 178
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 119 TCTTCTTGTGCTTTTCTTTATTTTTCCGATCGCATTTGCTCAACTGAGAGTCGGGTTTTA 178
Query 179 TAGCCGGTCATGCCCTCAAGCCGAGACTATCGTACGCAATCTGGTACGCCAACGGTTTGG 238
||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 179 TAGTCAATCATGCCCTCAAGCCGAGACTATCGTACGCAATCTGGTGCGCCAACGGTTTGG 238
Query 239 TGTTGA-CCCAACCGTTACCGCCGCTTTGCTCCGTATGCATTTCCACGACTGTTTCGTTA 297
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TGTT-ACCCCAACCGTTACCGCCGCTTTGCTCCGTATGCATTTCCACGACTGTTTCGTTA 297
Query 298 GGGGTTGCGACGCTTCTCTCCTTATTGATTCAACTACAT-CCGAGAAAACCGCTGGACCA 356
||| || |||||||||||||| ||||||||||| | || |||||||||| |||||||||
Sbjct 298 AGGGCTGTGACGCTTCTCTCCTCATTGATTCAACCA-ATTCCGAGAAAACTGCTGGACCA 356
Query 357 AACGGAAGCGTTAGGGAATTTGACCTGATCGACCGGATCAAGGCTCAGCTAGAGGCTGCA 416
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 357 AACGGAAGCGTCAGGGAATTTGACCTGATAGACCGGATCAAGGCTCAGCTAGAAGCTGCA 416
Query 417 TGCCCATCCACAGTCTCATGTGCTGACATCGTCACATTAGCCACACGAGACTCTGTGTTA 476
||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 417 TGCCCTTCCACAGTCTCATGTGCTGACATCGTCACATTGGCCACACGTGACTCGGTGGCC 476
Query 477 TTAGCCGGAGGCCCGAGCTACAGAATCCCTACAGGAAGGCGCGACGGTAGAGTCTCGAAC 536
|||||||||||||| |||||||| ||||| || |||||||| |||||||| ||||| |||
Sbjct 477 TTAGCCGGAGGCCCAAGCTACAGCATCCCCACGGGAAGGCGTGACGGTAGGGTCTCAAAC 536
Query 537 AATGTTGACGTAGGTTTACCAGGTCCAACAATCTCCGTCTCCGGAGCTGTGAGTTTCTTC 596
||| |||| ||| ||||| |||||||| ||||||||||| ||||| |||||||| |||
Sbjct 537 AATCTTGATGTAACCTTACCGGGTCCAACGATCTCCGTCTCTGGAGCCGTGAGTTTATTC 596
Query 597 ACGAACAAAGGGTTGAACACGTTTGATGCTGTGGCGCTTTTGGGTGCACACACCGTTGGT 656
|||||||||||| |||||||||| ||||| || || ||||||||||||||||| ||||||
Sbjct 597 ACGAACAAAGGGATGAACACGTTCGATGCAGTAGCTCTTTTGGGTGCACACACTGTTGGT 656
Query 657 CAGGGAAATTGTGGTCTCTTCAGTGACCGGATCACTAACTTCCAAGGAACCGGAAGACCC 716
|| ||||||||||||||||| |||||| | ||||||| |||||||||||| ||| ||||
Sbjct 657 CAAGGAAATTGTGGTCTCTTTAGTGACAGAATCACTAGCTTCCAAGGAACTGGACGACCG 716
Query 717 GACCCGTCCATGAATCCAGCTTTGGTAACCAGCCTAAGGAACACATGCAGAAACAGTGCG 776
|||||||||||| | || |||||||| |||||||||||||||||||||||||| || |||
Sbjct 717 GACCCGTCCATGGACCCCGCTTTGGTTACCAGCCTAAGGAACACATGCAGAAATAGCGCG 776
Query 777 ACGGCGGCACTAGACCAGTCGACTCCATTGAGGTTTGACAACCAATTCTTCAAACAGATC 836
|||||||||||||||||||||| ||||||||| || |||||||| |||||||| || |||
Sbjct 777 ACGGCGGCACTAGACCAGTCGAGTCCATTGAGATTCGACAACCAGTTCTTCAAGCAAATC 836
Query 837 CGTAAAAGAAGAGGAGTGTTGCAGGTTGACCAACGTCTCGCATCCGACCCACAAACTCGT 896
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 837 CGTAAAAGGAGAGGAGTGTTGCAAGTTGACCAACGCCTCGCATCCGACCCACAGACTCGT 896
Query 897 GGGATTGTGGCTCGGTATGCTAATAACAACGCCTACTTCAAACGTCAGTTCGTTAGAGCA 956
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 897 GGGATTGTGGCTCGGTATGCTAATAACAACGCCTTCTTCAAGCGTCAGTTCGTTAGAGCA 956
Query 957 ATGGTGAAAATGGGAGCCGTTGATGTGCTTACCGGTCGTAACGGTGAGATCAGAAGGAAC 1016
|||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 957 ATGGTGAAGATGGGAGCAGTTGATGTGCTTACTGGTCGTAACGGTGAGATCAGAAGGAAC 1016
Query 1017 TGCAGGAGATTTAACTGATGA 1037
||||||||||| |||| ||||
Sbjct 1017 TGCAGGAGATTCAACTAATGA 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58734637650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5