BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488650
Length=700
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17840.1 | Symbols: | DnaJ/Hsp40 cysteine-rich domain super... 798 0.0
> AT5G17840.1 | Symbols: | DnaJ/Hsp40 cysteine-rich domain superfamily
protein | chr5:5895674-5897150 REVERSE LENGTH=765
Length=765
Score = 798 bits (432), Expect = 0.0
Identities = 650/746 (87%), Gaps = 51/746 (7%)
Strand=Plus/Plus
Query 1 TTCGATTTCGAATTTTTCATCTTTCGATTTTTACTAGTTTCG--TC----TC--AATTCC 52
|||||||||||||||| |||||||||||| | | |||||||| || || ||||||
Sbjct 23 TTCGATTTCGAATTTTCCATCTTTCGATTCTCAGTAGTTTCGTCTCAATTTCATAATTCC 82
Query 53 -TGTGTAGCCGACAATGAATTCCGCTTTAGATTTTGCTTTTCCGGCTACATTTCCGGTTA 111
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 83 AT-TGTAGCCGATAATGAATTCCGCTTTAGATTTTGCTTTTCCGGCTACATTTCCGGTTA 141
Query 112 AATCGAGTTCTGTTGGCGGACATGGGATTCCTTCTTCTGGATTCGGTTCCCGCGTAAGAT 171
||||||||||||||||||||||| ||||| |||| |||||||| |||||||| ||||||
Sbjct 142 AATCGAGTTCTGTTGGCGGACATCGGATTGCTTCCCCTGGATTCAGTTCCCGCTTAAGAT 201
Query 172 TTTGCTCTCTTCCTCCTTGTTCATCTATCAAGGCTGAGTCATGTTTAAAAAGAGACCAGC 231
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 202 TGTGCTCTCTTCCTCCTTCTTCATCTATCAAGGCTGAGTCATGTTTAAAAAGAGACGTGC 261
Query 232 ATAAGCAAAGAAGCAGTCTTGAGTCAATGTTCTGTTATGATAAACCAATACCAGAGGAAA 291
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 ACAGGCAAAGAAGCAGTCTTGAGTCAATGTTCTGTTATGATAAACCAATACCAGAGGAAA 321
Query 292 TAATAGAGGAGCCAGTAGGATTATCCATGTCAGAGAGAGAGATTGGTGATAATCAGCGTT 351
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 TAATCGAGGAGCCAGTTGGATTATCCATGTCAGAGAGAGAGATTGGTGATAATCAGCGTT 381
Query 352 GCACTTGTTGTGAAGCTAAAGGTGCATTGCTTTGTGCAACTTGTTCTGGAACTGGTCTAT 411
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 382 GCACTTGTTGTGAAGCTAAAGGTGCATTGCTTTGTTCCACTTGTTCTGGAACTGGTCTAT 441
Query 412 ATGTAGACTCAATTATGGAGAGCCAAGGCATCATTGTTAAAGTCCGTTGCTTAGGTTGTG 471
||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 442 ATGTAGATTCCATTATGGAGAGTCAAGGCATCATTGTTAAAGTCCGTTGCTTAGGTTGTG 501
Query 472 GTGGAACTGGTAACATTATGTGCAAAAGTTGTGGCGGGCGTGGTCACGTAGGACACTAAT 531
|||||| |||||| |||||||||||| |||||| |||||||||||||||||||||| ||
Sbjct 502 GTGGAAGTGGTAATATTATGTGCAAACTTTGTGGTGGGCGTGGTCACGTAGGACACTGAT 561
Query 532 GAC---G-----C--T------CA-T-A-G-TTCTGTTTTACCTATTCCCCACTTTTTCT 571
||| | | | || | | | ||||||||||||||||| |||||||||||
Sbjct 562 GACTCCGTGTTTCACTTGTTTGCACTCATGGTTCTGTTTTACCTATTCGCCACTTTTTCT 621
Query 572 --CTCTGATCTTATTGTAAAATCAAA--------A-T-CC-TACGTT--TTTGAGTTCCT 616
||||||||||||||||||| | | | | || ||| | |||| |||| |
Sbjct 622 AGCTCTGATCTTATTGTAAAAGCCTACTTTTTTGAGTTCCATACATAGATTTGTGTTC-T 680
Query 617 T-TACTGATGTACTCTCTAGCTGAAAC-ATTTACAATCTTGTAACAGAGTCCATTCATTT 674
| |||||||||| ||||||||| |||| || |||||||||| |||| | ||||||||
Sbjct 681 TGTACTGATGTAATCTCTAGCT-AAACTATGCACAATCTTGTCCCAGACT--ATTCATTT 737
Query 675 TCCGTTCTTATATAAAATGGTTTCCT 700
|| ||| |||||||||||||||||||
Sbjct 738 TCTGTTGTTATATAAAATGGTTTCCT 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33908049225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5