BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488652
Length=1991
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17860.1 | Symbols: CAX7 | calcium exchanger 7 | chr5:590239... 3166 0.0
> AT5G17860.1 | Symbols: CAX7 | calcium exchanger 7 | chr5:5902394-5904380
REVERSE LENGTH=1987
Length=1987
Score = 3166 bits (1714), Expect = 0.0
Identities = 1904/1995 (95%), Gaps = 15/1995 (1%)
Strand=Plus/Plus
Query 1 CCACTTCATAATAATTTGCTTCCTTGAATGGCAAGtctcttctcctcacgtctcagctct 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 4 CCACTTCATACCCATTTGCTTCCTTGAATGGCAAGTCTCTTCTCCTCACGTCTCGGCTCT 63
Query 61 cgttctctttctctcctcatcaacatcttcttcatcttcctcatctatctccatttcgct 120
| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 64 CAATCTCTTTCTCTCCTCATCAACATCTTCTTCATCTTTCTCATCTTTCTCCATTTCGCT 123
Query 121 tcaCAAAATCCTTCTCCCTCTGGATCCATCCAAACCTTAAATT-CTCTCGCCGGCGGTGA 179
||||||| |||| ||||||| |||||||||||||||||||||| || | |||||||||||
Sbjct 124 TCACAAACTCCTCCTCCCTCCGGATCCATCCAAACCTTAAATTCCT-TTGCCGGCGGTGA 182
Query 180 CAGTGACAGCTGCAGCGGAGGACTCGCCAGCCTTGACGACCACCGTTCCAAGTGTTCTTA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CAGTGACAGCTGCAGCGGAGGACTCGCCAGCCTTGACGACCACCGTTCCAAGTGTTCTTA 242
Query 240 CATTAGATCTCAATCAAAATGTGGCCCACAAGGTTACATAGACTATCTCAAGATTTTCTT 299
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 CATAAGATCTCAATCAAAATGTGGCCCACAAGGTTACATAGACTATCTCAAGATTTTCTT 302
Query 300 CTGCATCTTCGGACAATCCCCTGTTTTGGGCCATCTAGTTTTATCCGTCTGGTTGTTTGT 359
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 303 CTGCATCTTCGGACAATCCCCTGTTTTGGGCCATCTAGTTTTATCCGCCTGGTTGTTTGT 362
Query 360 TCTGTTTTACTTGCTCGGAGACACGGCCGCGAGTTACTTCTGTCCTTCTTTAGACAGCTT 419
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TCTGTTCTACTTGCTCGGAGACACGGCCGCGAGTTACTTCTGTCCTTCTTTAGACAGCTT 422
Query 420 ATCTAAGGTTTTGAAGCTGTCTCCTACAATGGCTGGAGTCACGCTTCTTTCTCTCGGCAA 479
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 423 ATCTAAGGTTTTGAAGCTGTCTCCTACAATGGCTGGAGTCACGCTTCTCTCTCTTGGCAA 482
Query 480 CGGTGCACCTGATTTGTTCTCAAGTGTTGTCTCCTTCACTAGATCGAATAATGGCGATTT 539
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 483 CGGTGCGCCTGATTTGTTCTCAAGTGTTGTCTCCTTCACAAGATCGAATAATGGCGATTT 542
Query 540 CGGGCTCAACTCGATTTTAGGCGGTGCGTTCTTTGTCTCTAGCTTCGTTGTTGGGACGAT 599
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 543 TGGGCTCAACTCTATTTTAGGCGGTGCGTTCTTCGTCTCTAGCTTCGTTGTTGGGACGAT 602
Query 600 TTGTGTGTTGATTGGATCTAGAGATGTCTCTATCGACAGAAACAGCTTTATCCGCGACGT 659
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 603 TTGTGTGTTGATTGGATCTAGAGATGTCGCTATCGACAGAAATAGCTTTATCCGCGACGT 662
Query 660 GGTTTTTCTTCTGGTCGCTCTTTGCTGTCTCGGTTTGATCATCTTCATAGGCAAAGTAAC 719
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GGTTTTTCTTCTTGTCGCTCTTTGCTGTCTCGGTTTGATCATCTTCATAGGCAAAGTAAC 722
Query 720 CATTTGGGTCGCTCTCTGTTACCTCTCCATTTATCTCCTCTATGTAGGGCTCTTATCGGT 779
||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 723 CATTTGGGTCGCTCTCTGTTATCTCTCCATTTATCTCCTCTATGTAGGGTTTTTATCGGT 782
Query 780 TTCTCATTTCTTTGACCGCAAGAAACGTATGTCCGATCAGATTCTTCGAAGCAGAGAGGA 839
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 783 TTCACATTTCTTTGACCGCAAGAAACGTATGTCCGATCAGATTCTTCGTAGCAGAGAAGA 842
Query 840 TTTAGCCGAGATGGGTGTTCCGTTGTTAGGCGATATAACAGAGGAGAAGCCGGTTTTGCT 899
||| ||||||||||||||| ||||| ||||| ||||| |||||||||||| || |||||
Sbjct 843 TTTGGCCGAGATGGGTGTTTCGTTGCTAGGCTATATAGCAGAGGAGAAGCTGGCTTTGCC 902
Query 900 AGAGAAAACAGCTCAAGAATTCAAGATTGTGTTTGAAGATCCTCCAAAAAGGCACCGATC 959
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 903 AGAGAAAACAACTCAAGAATTCAAGATTGTGTTTGAAGATTCTCCAAAAAGGCACCGATC 962
Query 960 TTGCTTCTCGGTGCTAGTGTGCATCATAGGACTACCTCTATATCTCCCCAGACGGCTCAC 1019
||||||||||||||||||| |||| || ||||||||||||||||||||||| ||||||||
Sbjct 963 TTGCTTCTCGGTGCTAGTGAGCATAATTGGACTACCTCTATATCTCCCCAGGCGGCTCAC 1022
Query 1020 AATTCCCGTCGTTCGCGAAGAAAAATGGTCAAAGCCTTGCGCTGTGGTTTCCACAGCCAT 1079
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1023 AATTCCCGTCGTTTGCGAAGAAAAATGGTCAAAGCCTTGCGCTGTGGTTTCCACGGCCAT 1082
Query 1080 CGCGCCTGTTCTACTAACCGAACTTTACTGTTCTCATTACAGCGGATCCCAAAGAAACCT 1139
||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1083 CGCTCCTGTTCTACTAACCGAACTTTACTGTTCTCATTACAGCGGGTCACAAAGAAACCT 1142
Query 1140 AATCCTGTACAAAATATCCGGATCTATTGGGCTAATCCTCGGTATCTTAGCTTACTTGAC 1199
|||| |||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1143 AATCTTGTACATAATATCCGGATCTATCGGGCTAATCGTCGGTATCTTAGCTTACTTGAC 1202
Query 1200 GACAGAAAAATCACATCCGCCGAAGAAATTCTCATTAGTTTGGCTTCTAGGAGGCTTCAC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 GACAGAAAAATCACATCCGCCGAAGAAATTCTCATTAGTTTGGCTTCTAGGAGGCTTCAC 1262
Query 1260 GATGAGTGTGACATGGACATACATGATAGCACAAGAGCTAGTCTCATTGTTAATATCCTT 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 GATGAGTGTGACATGGACATACATGATAGCACAAGAGCTAGTCTCATTGTTAATATCCTT 1322
Query 1320 CGGTAATATCTTTGGCATAAGCCCCTCCGTGCTAGGACTAACGGTCCTAGCTTGGGGTAA 1379
|||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 1323 AGGTAATATCTTTGGTATAAGCCCATCCGTGCTAGGACTAACCGTCCTAGCTTGGGGAAA 1382
Query 1380 TTCTCTAGGCGATCTAATCGCAAATGTGACCGTGGCGTTTCACGGAGGCAACGACGGTGC 1439
||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1383 TTCTCTAGGCGATCTTATCGCGAATGTGACCGTGGCGTTTCACGGAGGCAACGATGGTGC 1442
Query 1440 TCAGATAGCCCTTTCCGGGTGCTATGCAGGTCCGCTATTCAACACGGTAATTGGACTAGG 1499
||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1443 TCAGATAGCACTTTCCGGATGCTACGCAGGCCCGCTATTCAACACGGTAATTGGACTAGG 1502
Query 1500 TGTGCCACTTGTCATCTCCTCGTTGGCCGAATACCCCGGGGTCTACATCATTCCTAGTGA 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 TGTGCCACTTGTCATCTCCTCGTTGGCCGAATACCCCGGGGTCTACATCATTCCTAGTGA 1562
Query 1560 CAATTCGTTGCTTGAGACACTAGGGTTCTTAATGGTAGGCTTGCTTTGGGCACTTGTGAT 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 CAATTCGTTGCTTGAGACACTAGGGTTCTTAATGGTAGGCTTGCTTTGGGCACTTGTGAT 1622
Query 1620 AATGCCAAAGAAGAAGATGAGACTTGATAAGCTTGTCGGTGGGGGCTTACTCGCTATTTA 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 AATGCCAAAGAAGAAGATGAGACTTGATAAGCTTGTCGGTGGGGGCTTACTCGCTATTTA 1682
Query 1680 CCTCTGTTTCTTGTCTTTGAGATTGGCTAGAGTTTTCGGAGTCCTTGATATCGACCGGTG 1739
||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1683 CCTCTGTTTCTTGTCCTTGAGGTTGGCTAGAGTTTTCGGAGTCCTTGATACCGACCGGTG 1742
Query 1740 AATTT-ATAGTAATGTAAAttttttaaattttgtttggttgtttttgTAATAATAGTTAA 1798
||||| ||||||||||||||||| | ||| |||| || ||| |||||| |||||||
Sbjct 1743 AATTTTATAGTAATGTAAATTTTGT---TTTA-TTTG-TT-TTT--GTAATAGTAGTTAA 1794
Query 1799 TTCTTAAAGACAAAATTTGCAAATAGGTCAAATTTGTGGGTCTTAATTTATTCCTTAAAT 1858
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 TTCTTAAAGAAAAAAATTGCAAATAGGTCAAATTTGTGGGTCTTAATTTATTCCTTAAAT 1854
Query 1859 GAAAAGAAACTTTGTGCATAGTTTGAAT-ACTATCGAGAGGGATGGCTAAATTTGTTT-G 1916
||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 1855 GAAAAGATACTTTGTGCATAGTT-GAATTACTATCGAGAGGGATGGCTAAATTTGTTTTG 1913
Query 1917 TTGCTGAACACTCATTTTCTGTCAAATTCACTTAGTACCTCACTAAAATTaaaaaaaGCT 1976
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1914 TTGCTGAACACTCATTTTCTGTCAAACTCACTTAGTACCTCACTAAAATTAAAAAA-GCT 1972
Query 1977 TTGGATTGTTGTTCT 1991
|||||||||||||||
Sbjct 1973 TTGGATTGTTGTTCT 1987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98644070925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5