BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488655
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17900.1 | Symbols: | microfibrillar-associated protein-rel... 2130 0.0
AT4G08580.1 | Symbols: | microfibrillar-associated protein-rel... 2119 0.0
> AT5G17900.1 | Symbols: | microfibrillar-associated protein-related
| chr5:5924707-5926901 FORWARD LENGTH=1686
Length=1686
Score = 2130 bits (1153), Expect = 0.0
Identities = 1290/1357 (95%), Gaps = 6/1357 (0%)
Strand=Plus/Plus
Query 1 ACAGATAGCTAATAAAATTGAGTCTGGTTACTCGCAAGTGCAAATATGTCGGTCACAGCT 60
|||||||||||||| |||||||| ||| |||||||||||| ||||||||||||||||||
Sbjct 123 ACAGATAGCTAATATAATTGAGTTTGGATACTCGCAAGTGAAAATATGTCGGTCACAGCG 182
Query 61 GGAGTGAGTG-ATGCTGCAATTGCTGTAAGGGCA-AAGCTACAAGGTGGTATTGGACAGA 118
|||||||||| || |||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct 183 GGAGTGAGTGAAT-CTGCAATTGCTGTAAGGG-AGAAACTAAAAGGTGGTATTGGACAGA 240
Query 119 CTAGAGTGAGAAGGTATTGGCCAGGAAAAGCTCCTGAGTGGGCTGAGGAAGCCGAAGAAG 178
||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 241 CTAAAGTGCGAAGGTATTGGCCAGGAAAAGCTCCGGAGTGGGCTGAGGAAGCTGAAGAAG 300
Query 179 ATGAGGATGTTAGGATGCAGACGGCTTCTGTTTTGGATAGATCTTTTCCAAAGCAGGATG 238
|||| |||||||||||||||| || |||||||||||||||| ||||||||||| | ||||
Sbjct 301 ATGATGATGTTAGGATGCAGAAGGTTTCTGTTTTGGATAGAGCTTTTCCAAAGAATGATG 360
Query 239 ATCTT-GGTGTTGCTAGGAAGGATGACCCAAGGCTGCGCCGTTTAGCTCAGACCAGAGTT 297
|| || |||||||||||||||||||| ||||||||||||||||||||| |||| | ||||
Sbjct 361 AT-TTGGGTGTTGCTAGGAAGGATGATCCAAGGCTGCGCCGTTTAGCTAAGACTAAAGTT 419
Query 298 GAAAACCGTGACGAAGTTAGAGCTGATCATCGGCGAATTAGACAGGCTGAGATTATTTCT 357
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 420 GAAAACCGTGACGAAGTTAGAGCTGATCATCGGCGGATAAGACAGGCTGAGATTATTTAT 479
Query 358 ACGGAAGAAGAAGATTCGAGGAATCAAGAGACTAGAGACGAGGATGATGATGAAGATGCC 417
|||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 480 ACGGAAGAAGAAGAATCGAGGAATCAAGAGAATAGAGACGAGGACGATGATGAAGATGCC 539
Query 418 TTGgaagaaagaagaagaagaattagagagaaaaatcttagaagagcacaagaagagGCT 477
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 540 TTGGAAGAGAGAAGAAGAAGAATTAGAGAGAAAAATCTTAGAAGAGCGCAAGAGGAGGCT 599
Query 478 GCTTTACTTCCTTTagaagaagaagatgagctacaagaggaagaagaggaggaggaggag 537
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 GCTTTACTTCCTTTAGAAGAAGAAGATGAGATACAAGAGGAAGAAGAGGAGGAGGAGGAG 659
Query 538 TCCGAGTACGAGACTGATTCAGAAGATGAGATGCCTGGTATTGCCATGATTAAGCCTGTT 597
|| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 660 TCTGAGTACGAGACTGATTCGGAAGATGATATGCCTGGTATTGCCATGATTAAGCCTGTT 719
Query 598 TTTGTGCCGAAAGCTGAGAGAGATACAATTGCAGAGCGTGAGCGGCTTGAGGCTGAGGAA 657
||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct 720 TTTGTACCGAAAGCTGAGAGAGATACAATTGCAGAGCGAGAGAGGCTTGAGGCTGAAGAA 779
Query 658 GAAGCTCTTGAGGAATTAGCAAAGAGAAAACTGGAGAAAAGAAAAATAGAGACAAAGCAA 717
||||||||||| |||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 780 GAAGCTCTTGAAGAATTAGCAAAGAGAAAATTGGAGCAAAGAAAATTAGAGACAAAGCAA 839
Query 718 ATAGTGGTTGAGGAAGTTAAGAAAGATGAAGAGATACGGAAGAACATTCTATTGGAGGAA 777
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ATAGTGGTTGAGGAAGTTAGGAAAGATGAAGAGATACGGAAGAACATTCTATTGGAGGAA 899
Query 778 GCAAATATTGGAGATGTGGAAACTGATGACGAACTCAATGAAGCTGAGGAGTATGAAGTG 837
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 GCAAATATTGGAGATGTGGAAACTGATGATGAACTCAATGAAGCTGAGGAGTATGAAGTT 959
Query 838 TGGAagacaagagagatcggtaggatcaagagagaaagagatgcaagggaagctatgctg 897
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TGGAAGACAAGAGAGATTGGTAGGATCAAGAGAGAAAGAGATGCAAGGGAAGCTATGCTG 1019
Query 898 agagagagggaagaaatagagaagttgaggaatatgacagagcaggagaggagagaatgg 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1020 AGAGAGAGGGAAGAAATAGAGAAGTTGAGGAATATGACAGAGCAGGAGAGGAGAGATTGG 1079
Query 958 gagaggaagaatCCGAAACCTTCATCAACTCAACCGAAAAAGAAATGGAACTTTATGCAA 1017
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1080 GAGAGGAAGAATCCGAAACCTTTGTCAGCTCAACCGAAAAAGAAATGGAACTTTATGCAG 1139
Query 1018 AAATACTACCACAAGGGTGCCTTCTTCCAGGCAGATCCTGATGATGAGGCAGGTTCTGCT 1077
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AAATATTACCACAAGGGTGCCTTCTTCCAGGCAGATCCTGATGATGAGGCAGGTTCTGCT 1199
Query 1078 GGAACCGATGGTATATTTCAGCGCGACTTCTCTGCTCCAACCGGAGAAGATAGGTTGGAC 1137
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1200 GGAACCGATGGTATATTTCAGCGCGACTTCTCTGCTCCAACTGGAGAAGATAGGTTGGAC 1259
Query 1138 AAATCGATCCTGCCCAAAGTCATGCAAGTCAAGCACTTTGGTCGTAGTGGAAGAACTAAA 1197
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AAATCGATTCTCCCCAAAGTTATGCAAGTCAAGCACTTTGGTCGTAGTGGAAGAACTAAA 1319
Query 1198 TGGACTCACCTTGTCAATGAGGATACAACAGATTGGAGTAACCCGTGGACTTCCAATGAT 1257
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1320 TGGACTCACCTTGTCAATGAGGACACAACAGATTGGAGTAACCCGTGGACTTCCAATGAT 1379
Query 1258 CCTCTACGGGAAAAATACAACAAGAAAATGGCAGGCATGGATGCTCCAATTGCAAAACCA 1317
|||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1380 CCTCTACGTGAAAAATACAACAAGAAAATGGCAGGCATGGATGCTCCTATCGCAAAACCA 1439
Query 1318 AAAGGGAGCAAGAAGATGAAAGATTGGGAGACTTAAA 1354
|||||||||||||||||||||||||||||| ||||||
Sbjct 1440 AAAGGGAGCAAGAAGATGAAAGATTGGGAGTCTTAAA 1476
> AT4G08580.1 | Symbols: | microfibrillar-associated protein-related
| chr4:5461483-5463907 FORWARD LENGTH=1595
Length=1595
Score = 2119 bits (1147), Expect = 0.0
Identities = 1289/1358 (95%), Gaps = 8/1358 (1%)
Strand=Plus/Plus
Query 1 ACAGATAGCTAATAAAATTGAGTCTGGTTACTCGCAAGTGCAAATATGTCGGTCACAGCT 60
||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 54 ACAGATAGCTAATTTGATTGAGTTTGGTTACTTGCAAGTGCAAATATGTCGGTCACAGCG 113
Query 61 GGAGTGAGTG-ATGCTGCAATTGCTGTAAGGGCA-AAGCTACAAGGTGGTATTGGACAGA 118
|||||||||| || |||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct 114 GGAGTGAGTGAAT-CTGCAATTGCTGTAAGGG-AGAAACTAAAAGGTGGTATTGGACAGA 171
Query 119 CTAGAGTGAGAAGGTATTGGCCAGGAAAAGCTCCTGAGTGGGCTGAGGAAGCCGAAGAAG 178
||| ||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 172 CTAAAGTAAGAAGGTATTGGCCAGGAAAAGCTCCGGAGTGGGCTGAGGAAGCTGAAGAAG 231
Query 179 ATGAGGATGTTAGGATGCAGACGGCTTCTGTTTTGGATAGATCTTTTCCAAAGCAGGATG 238
|||| |||||||||||||||| | |||||||||||||||| ||||||||||| | ||||
Sbjct 232 ATGATGATGTTAGGATGCAGAAGTTTTCTGTTTTGGATAGAGCTTTTCCAAAGAATGATG 291
Query 239 ATCTT-GGTGTTGCTAGGAAGGATGACCCAAGGCTGCGCCGTTTAGCTCAGACCAGAGTT 297
|| || |||||||||||||||||||| ||||||||||| |||||||||||||| | ||||
Sbjct 292 AT-TTGGGTGTTGCTAGGAAGGATGATCCAAGGCTGCGGCGTTTAGCTCAGACTAAAGTT 350
Query 298 GAAAACCGTGACGAAGTTAGAGCTGATCATCGGCGAATTAGACAGGCTGAGATTATTTCT 357
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 351 GAAAACCGTGACGAAGTTAGAGCTGATCATCGGCGTATTAGACAGGCTGAGATTATATCT 410
Query 358 ACGGAAGAAGAAGATTCGAGGAATCAAGAGACTAGAGACGAGGATGATGATGAAGATGCC 417
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 411 ACGGAAGAAGAAGAATCGAGGAATCAAGAGAATAGAGACGAGGATGATGATGAAGATGCC 470
Query 418 TTGgaagaaagaagaagaagaatt-agagagaaaaatcttagaagagcacaagaagagGC 476
|||||||||||||||||||||||| || ||||| ||||||||| |||||||||| |||||
Sbjct 471 TTGGAAGAAAGAAGAAGAAGAATTAAG-GAGAAGAATCTTAGACGAGCACAAGAGGAGGC 529
Query 477 TGCTTTACTTCCTTTagaagaagaagatgagctacaagaggaagaagaggaggaggagga 536
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 530 TGCTTTACTTCCTTTAGAAGAAGAAGATGAGATACAAGAGGAAGAAGAGGAGGAGGAGGA 589
Query 537 gTCCGAGTACGAGACTGATTCAGAAGATGAGATGCCTGGTATTGCCATGATTAAGCCTGT 596
||| ||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||
Sbjct 590 GTCTGAGTACGAGACTGATTCGGAAGATGATATGCCTGGTATTGCCTTGATTAAGCCTGT 649
Query 597 TTTTGTGCCGAAAGCTGAGAGAGATACAATTGCAGAGCGTGAGCGGCTTGAGGCTGAGGA 656
|||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| ||
Sbjct 650 TTTTGTACCGAAAGCTGAGAGAGATACAATTGCAGAGCGAGAGAGGCTTGAGGCTGAAGA 709
Query 657 AGAAGCTCTTGAGGAATTAGCAAAGAGAAAACTGGAGAAAAGAAAAATAGAGACAAAGCA 716
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 710 AGAAGCTCTTGAGGAATTAGCAAAGAGAAAATTGGAGCAAAGAAAAATAGAGACAAAGCA 769
Query 717 AATAGTGGTTGAGGAAGTTAAGAAAGATGAAGAGATACGGAAGAACATTCTATTGGAGGA 776
||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 770 AATTGTGGTTGAGGAAGTTAGGAAAGATGAAGAGATACGGAAGAACATACTATTGGAGGA 829
Query 777 AGCAAATATTGGAGATGTGGAAACTGATGACGAACTCAATGAAGCTGAGGAGTATGAAGT 836
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 AGCTAATATTGGAGATGTGGAAACTGATGACGAACTCAATGAAGCTGAGGAGTATGAAGT 889
Query 837 GTGGAagacaagagagatcggtaggatcaagagagaaagagatgcaagggaagctatgct 896
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 890 TTGGAAGACACGAGAGATTGGTAGGATCAAGAGAGAAAGAGATGCAAGGGAAGCTATGCT 949
Query 897 gagagagagggaagaaatagagaagttgaggaatatgacagagcaggagaggagagaatg 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 950 GAGAGAGAGGGAAGAAATAGAGAAGTTGAGGAATATGACAGAGCAGGAGAGGAGAGATTG 1009
Query 957 ggagaggaagaatCCGAAACCTTCATCAACTCAACCGAAAAAGAAATGGAACTTTATGCA 1016
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1010 GGAGAGGAAGAATCCGAAACCTTCTTCAGCTCAACCGAAAAAGAAATGGAACTTTATGCA 1069
Query 1017 AAAATACTACCACAAGGGTGCCTTCTTCCAGGCAGATCCTGATGATGAGGCAGGTTCTGC 1076
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 GAAATATTACCATAAGGGTGCCTTCTTCCAGGCAGATCCTGATGATGAGGCAGGTTCTGC 1129
Query 1077 TGGAACCGATGGTATATTTCAGCGCGACTTCTCTGCTCCAACCGGAGAAGATAGGTTGGA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 TGGAACCGATGGTATATTTCAGCGCGACTTCTCTGCTCCAACCGGAGAAGATAGGTTGGA 1189
Query 1137 CAAATCGATCCTGCCCAAAGTCATGCAAGTCAAGCACTTTGGTCGTAGTGGAAGAACTAA 1196
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1190 CAAATCGATTCTCCCCAAAGTTATGCAAGTCAAGCACTTTGGTCGTAGTGGAAGAACTAA 1249
Query 1197 ATGGACTCACCTTGTCAATGAGGATACAACAGATTGGAGTAACCCGTGGACTTCCAATGA 1256
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1250 ATGGACTCACCTTGTCAATGAAGACACAACAGATTGGAGTAACCCGTGGACTTCCAATGA 1309
Query 1257 TCCTCTACGGGAAAAATACAACAAGAAAATGGCAGGCATGGATGCTCCAATTGCAAAACC 1316
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1310 TCCTCTACGTGAAAAATACAACAAGAAAATGGCAGGCATGGATGCTCCAATCGCAAAACC 1369
Query 1317 AAAAGGGAGCAAGAAGATGAAAGATTGGGAGACTTAAA 1354
||||||||||||||||||||||||||||||||||||||
Sbjct 1370 AAAAGGGAGCAAGAAGATGAAAGATTGGGAGACTTAAA 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66666323760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5