BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488658
Length=2531
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17930.1 | Symbols: | MIF4G domain-containing protein / MA3... 3797 0.0
> AT5G17930.1 | Symbols: | MIF4G domain-containing protein / MA3
domain-containing protein | chr5:5939998-5944430 REVERSE
LENGTH=2634
Length=2634
Score = 3797 bits (2056), Expect = 0.0
Identities = 2360/2504 (94%), Gaps = 31/2504 (1%)
Strand=Plus/Plus
Query 53 TTCGAATCTGTTCTCGTCTTTCAAGTGTTTGCAGAGAATCTATTGGGCCAGCTAAACATG 112
|||||||| ||||||||||||||||||| ||||||||||||||||| ||| | ||||||
Sbjct 91 TTCGAATCAATTCTCGTCTTTCAAGTGTTGGCAGAGAATCTATTGGGTCAGAT-AACATG 149
Query 113 GGGAGCTCACGTCATGAAAAGCGAAAAGAAGCTCGCTTGCAGAAGAACCAGAAAAAACAT 172
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 150 GGGAGCTCTCGTCATGAAAAGCGAAAAGAGGCTCGCTTGCAGAAGAACCAGAAAAAACAT 209
Query 173 GAATCTTGGCTTCAGCGTCAGAAGTCGGAAAAGGAGAAACGAG--TC-TCA--T-CATCA 226
|||||||||||||||||||| |||||||||||||||||||||| || ||| | | |||
Sbjct 210 GAATCTTGGCTTCAGCGTCATAAGTCGGAAAAGGAGAAACGAGTATCATCATCTGCTTCA 269
Query 227 GCTCAGAAGACTGGTGAGGTGATCAAGTCTGAAAATTTTCACCAGATAAGTAATAGTGAA 286
||||||||| ||||||| ||||||||||||||| |||||| |||||||||| |||||| |
Sbjct 270 GCTCAGAAGTCTGGTGATGTGATCAAGTCTGAAGATTTTCGCCAGATAAGTGATAGTGTA 329
Query 287 ACTGAACATATGGAATCAAGTAGGCCTAGTGGAAACAAGGATGATGGAAAGTCTTTTATA 346
||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 330 ACTGAACATATGGAATCAAGTAGTCCTAGTGGAAACAAAGACCATGGAAAGTCTTTTATA 389
Query 347 CATAAGAAAGAAGAGGTTAGAGTCAAATCAAAGGAGAAGAAGATGCAGAGAGTACAGAGA 406
| ||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||
Sbjct 390 CCTAAGAAAGAAGAGGTTAGAGTCAAATCAAAGGAGAAGAAGATGCAAAAAGTAGAGAGA 449
Query 407 ATGAAGGATCTGAATAGACCAAAGAAGAAGACAAAATTTGAAGAGTTTCTTGAAATGGAT 466
|| ||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct 450 ATAAAGGATCTGAATAGACCAAGGAAGAAGACGAATTTTGAAGAGTTTCTTGAAATGGAT 509
Query 467 ACACCAACTGTGATATCTGGTGACCAGGATGCTGAACTTGAGAGAAGGCTCGCAAAGAAG 526
||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 510 ACACCAACTGTAATATCTGGAGACCAGGATGCTGAACTTGAGAGGAGGCTCGCAAAGAAG 569
Query 527 CTCAAGGTAAAGAAAGGAAAACTAAGGGGCTTGGATGATGGATTGAACGATTTGTTCGAA 586
|||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 570 CTCAAGATAAAGAAAGGAAAACTAAGGGGCATGGATGATGGATTGAATGATTTGTTCGAA 629
Query 587 GGACTTCCATCTGTACTTGATTCGATGGAATCTGAACTTGGTGATTCTCGTAAGAAACGT 646
|||||||||||||||||||||||||||| ||||||||| |||||||| || |||||||||
Sbjct 630 GGACTTCCATCTGTACTTGATTCGATGGGATCTGAACTCGGTGATTCCCGAAAGAAACGT 689
Query 647 AAGAAAAAGAGATCCGAAGAAAAACATGACCATGAGGATGTCGATAAGCTAGCAAATGAA 706
|||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 690 AAGAAAAAGAGATCAGAAGAAAAACAGGACCATGAGGATGTCGATGAGCTAGCAAATGAA 749
Query 707 GATTTGGAGCGTGAAGAATCTG-ATTTT-T-----------C--TGAAGAGCCTGCAGGA 751
|||||||||| ||||||||||| ||||| | | |||||||||| ||||
Sbjct 750 GATTTGGAGCATGAAGAATCTGAATTTTCTGACGAGGAAAGCGAAGAAGAGCCTGTAGGA 809
Query 752 AAAAGAGACCGTAAACGGCAT---AAGAAGAAGAAGTCTGTAGATGAAGATCTAGAAAGT 808
||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 810 AAAAGAGACCGTAAAAGGCATAAGAAGAAGAAGAAGTCTGTAGATGAAGAACTAGAAAGT 869
Query 809 GATCCGATGAATATCACAGGTGATGGTGAGTCAGAGACTATTACTTATCACGATTCACCG 868
|||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||
Sbjct 870 GATCTGATGAATATCACAGATGATGGTGAGTCAGAGACTGTTAATTATCACGATTCACCG 929
Query 869 TCAAGCTTGGAGAAAGTAGA-ACCTCCTTTGCACGAGCATAAGCCAGAGAGTAGCAGCAA 927
|||||||||||||||||||| | |||||||||| |||| |||||||||||| ||||||||
Sbjct 930 TCAAGCTTGGAGAAAGTAGATA-CTCCTTTGCATGAGCGTAAGCCAGAGAGCAGCAGCAA 988
Query 928 GTATGTTGCTCCTCATTTGAGATCTCAGGCCAAAAGTGAATCTGAAGAACTCACTAAAAT 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 GTATGTTGCTCCTCATTTGAGATCTCAGGCCAAAAGTGAATCTGAAGAACTCACTAAAAT 1048
Query 988 GCGTACACGGATAAAAGGTCTTCTCAATAAGATGGCTGAATCCAATGTTGAAACAATAAC 1047
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1049 GCGTACACGGATAAAAGGTCTTCTCAATAAGATGGCAGAATCCAATGTAGAAACAATAAC 1108
Query 1048 TGCAGAACTTGCCTCAATATATCGTTCTGTTGCGAGAAGTGTGTCCTCTCAGATTTTTTG 1107
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1109 TGCAGAACTTGCCACAATCTATCGTTCTGTTGCGAGAAGTGTGTCCTCTCAGATTTTCTG 1168
Query 1108 TGAAGAAGTTTTGACAACTTATGCGAGAGGCAATGAACAGTACGCTGTATTTGCTTCTTT 1167
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 TGAAGAGGTTTTGACAACTTATGCGAGAGGCAATGAACAGTACGCTGTATTTGCTTCTTT 1228
Query 1168 CATAGCTGGCATGGCGTGTCTAGTTGGAATGGATTTTAGTGCAAAGCTTATTGCATCACT 1227
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1229 CATAGCCGGCATGGCGTGTCTAGTTGGAATGGATTTTAGTGCAAAGCTAATTGCATCACT 1288
Query 1228 TGCTAAATCTTTCGAGGATGAATATCAGAAAGAAGACAGTCTCTCTTTAAATGGGATTTC 1287
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1289 TGCTAAATCTTTCGAGGATGAATATCAGAAGGAAGACAGTCTCTCTTTAAATGGGATTTC 1348
Query 1288 TCTTTTGCTTTCTTATCTTTGCATATTGGGAGTTTGCTCCAGTGATCTTATTTATGATTT 1347
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1349 TCTTTTGCTTTCTTATCTTTGCATATTGGGAGTTTGCTCCAGTGATCTTATATATGATTT 1408
Query 1348 CCTAATGACATTGGGGAAACGGCTGACTAAAGTTGATGCTTTCACTATCACAACTGTTTT 1407
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1409 CTTAATGACATTGGGGAAACGGCTGACTAAAGTTGATGCTTTCACTATCACCACTGTTTT 1468
Query 1408 AGATTGTTGTGGAATGAAAATAAGAAGTGATGATCCTTTGGCTATGAAAACATTCATCAT 1467
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1469 AGATTGCTGTGGAATGAAAATAAGAAGTGATGATCCTCTGGCTATGAAAACATTCATCAT 1528
Query 1468 CAGCATCCAGAACAAGGCAAATGAATTGAAAACCTCCTCCGATGGCCAGACACAAATGAG 1527
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1529 CAGCATCCAGAACAAGGCAAATGAATTGAAAACCTCCTCCGATGGCCAGACACAAATGAA 1588
Query 1528 TAACATGATGATGGAAAAGATGCTTGAAACCATTTCTGCAATAAAGAACAACAAGTTGAG 1587
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1589 TAACATGATGATGGAAAAGATGCTTGAAACCATTTCCGCAATAAAGAACAACAAGTTGAG 1648
Query 1588 AGCTAAAGAGGATTCCGTCCAGAACACAAGGGTAAAGAAGTGGCTTCAAAAGTTGAGAGT 1647
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1649 AGCCAAAGAGGATTCCGTCCAGAACACAAGGGTAAAGAAGTGGCTTCAAAAGTTGAGAGT 1708
Query 1648 GGAAGATGTATTGTTAAGAGGGCTTACATGGAGCAAGCTGCTTGACCCCGAGAAGAAGGG 1707
||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1709 AGAAGAAGTGTTATTAAGAGGGCTTACATGGAGCAAGCTGCTTGACCCCGAGAAGAAGGG 1768
Query 1708 TCAGTGGTGGATATCTGGCGATTTGGTGGTTGACTCAAACACCGCTGAAGATGTAGCAGA 1767
|||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1769 TCAGTGGTGGCTTTCTGGCGATTTGGTGGTTGACTCAAACACCGCTGAAGATATAGCAGA 1828
Query 1768 AACAATGGATGCAGAGGTTGTTGAGGCTCAGAAAATGTTAAAGCTAGCTGATGCACAGAG 1827
||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 1829 AACAATGGATGCAGAGGTTGTTGAGGCCCAAAAAATGTTAAAGCTAGCTGAGGCACAGAG 1888
Query 1828 GATGAATACAGATTCCAGAAAAGCTATATTTTGTGTGATCATGAGTAGTGAGGACTACAT 1887
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1889 GATGAATACAGATTCCAGAAAAGCAATATTTTGTGTGATCATGAGTAGTGAGGACTACAT 1948
Query 1888 TGATGCATTCGAGAAACTTCTTAGATTGGATTTGCCAGGAAAACAGGACAGAGAGATCAT 1947
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1949 CGATGCATTCGAGAAACTTCTTAGATTGGATTTGCCAGGAAAACAGGACAGAGAGATCAT 2008
Query 1948 GAGGGTTCTAGTTGAATGCTGTTTACAGGAGAAAGCATTTAACAAGTACTACACAGTCCT 2007
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 2009 GAGGGTTCTAGTTGAATGCTGTTTACAGGAGAAAGCATTCAACAAGTTCTACACAGTCCT 2068
Query 2008 TGCTTCAAAGTTGTGCGAGCACGACAAAAATCATAAGTTTACACTGCAGTATTGCATTTG 2067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2069 TGCTTCAAAGTTGTGCGAGCACGACAAAAATCATAAGTTTACACTGCAGTATTGCATTTG 2128
Query 2068 GGACCATTATAAAGAACTAGAGTCGATGTCACTTCAGAGATCGATGCATCTGGCGAAATT 2127
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2129 GGACCATTTTAAAGAACTAGAGTCGATGTCACTTCAGAGATCGATGCATCTGGCGAAATT 2188
Query 2128 TGTGGCAGAGATTATTGTGACCTTCAATCTTTCTCTTGCGGTCCTCAAATCCGTGGACTT 2187
||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||
Sbjct 2189 CGTGGCAGAGATTATTGTAACCTTCAATCTTTCTCTTGCTGTTCTCAAATCCGTTGACTT 2248
Query 2188 GGCAAATCCAGTGGAGTTAACTCCAAAACGAATTATGCACTTTCGAATGCTGTTTGAGGC 2247
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 2249 AGCAAATCCAGTGGAGTTAACTCCAAAACGAATCATGCACTTTCGAATGCTGTTCGAGGC 2308
Query 2248 CATCTTTGAGCACCCCGAGAATCTTGTGTGGAACTTGTTCACACGCATAGCCTTGAATCC 2307
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2309 CATCTTTGAGCACCCTGAGAATCTTGTGTGGAACTTGTTCACACGCATAGCCTTGAATCC 2368
Query 2308 AGACTATGAAGGTCTGCGCGATGGCATCAAGTTCTTTGTGAAGGAATATGTTGTGAAAAC 2367
|| ||||||| ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 GGAATATGAAGCTCTACGAGATGGCATCAAGTTCTTTGTGAAGGAATATGTTGTGAAAAA 2428
Query 2368 TAATAAGGCGATCTCTGGGAAATTCAGGAAAGCGAAAGAAGCTCTTAACAACGCAGAAGG 2427
||| ||||| |||| |||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 2429 TAACAAGGCAATCTATGGGAAATTCAGGAAAGCTAAAGAAGCACTTAACAATGCAGAAGG 2488
Query 2428 ATTGCTCATGTGATTCGGTTGTTGCAACCAACAATTTTGAAGCTCTCTTTATGTTGTTGT 2487
||| |||||||||| | |||||||| |||||||||||||||| ||||||| | | |||||
Sbjct 2489 ATTACTCATGTGATCCTGTTGTTGCCACCAACAATTTTGAAG-TCTCTTT-T-T-GTTGT 2544
Query 2488 ACACACTTTCTTCTAACTTAATTAAAGTTTCTACTTTCTATGAT 2531
||||||| |||||||| |||||||||||||||||||| || |||
Sbjct 2545 ACACACTATCTTCTAATTTAATTAAAGTTTCTACTTTGTAAGAT 2588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125618025272
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5