BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488659

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G06555.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   309    1e-83


> AT2G06555.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:2604148-2604927 
REVERSE LENGTH=622
Length=622

 Score =  309 bits (167),  Expect = 1e-83
 Identities = 299/356 (84%), Gaps = 36/356 (10%)
 Strand=Plus/Plus

Query  1    TGTTATGAGTTTGCCTCTCGGACTCCTCGCAGTGGAGAGAATGAAGATGACATTATCGTG  60
            |||||||||||||||| ||||||||||||||| ||||||| | || |||||||| |||||
Sbjct  92   TGTTATGAGTTTGCCTGTCGGACTCCTCGCAGGGGAGAGACTCAATATGACATTCTCGTG  151

Query  61   CTGGCCTACAAGCTTTACCATCAAGATCaaaaaaaCAAATTTAGT-CTTGAGCATGTTTG  119
            || |||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct  152  CTTGCCTACAAGCTTTACCATCAAGATCAAAAAAACAAATTCA-TCCTTGAGCATGTTTG  210

Query  120  GAGAATCCTCAAGACTGATCAGAAATGGTGCAATTGGTGTGAGACCAAACTTCCTGCCAA  179
            ||||||||||||||||||||| ||  | |    ||  ||     ||||       |  ||
Sbjct  211  GAGAATCCTCAAGACTGATCA-AA--G-T----TTC-TG-----CCAA-------G--AA  247

Query  180  GAAGAAAGCTAAACTTTCATCTGTAGAAGAAGAGAGTCTCCAAAGGCCTATAGGTGTGAA  239
            ||| |  ||||||||||||||||||||| |||| |||||  |||||||||||||||||||
Sbjct  248  GAA-A--GCTAAACTTTCATCTGTAGAACAAGAAAGTCTTAAAAGGCCTATAGGTGTGAA  304

Query  240  GGCAGCCAAGGCTTTAGCCAAGTCTAAAGTGAAAGAGAAGGATTTGGCTTTCAAAGAGAG  299
            |||||||||||||| ||||||||| |||   |  |||||||||||| || ||||||||||
Sbjct  305  GGCAGCCAAGGCTTCAGCCAAGTC-AAA---A--GAGAAGGATTTGACTGTCAAAGAGAG  358

Query  300  ACTCTCCAAGCAGAAGCTACTTGACAGCCTTCTTGGA-AGGTCTGATGGATTGAGT  354
            ||||||||| || ||||||||||||||||| |||  | |||||| |||||||||||
Sbjct  359  ACTCTCCAAACATAAGCTACTTGACAGCCTACTTA-ATAGGTCTAATGGATTGAGT  413



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20056831851


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5