BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488660 Length=743 Score E Sequences producing significant alignments: (Bits) Value AT2G06550.1 | Symbols: | transposable element gene | chr2:2602... 1116 0.0 AT4G01975.1 | Symbols: | transposable element gene | chr4:8586... 374 8e-103 AT5G28888.1 | Symbols: | transposable element gene | chr5:1090... 294 7e-79 > AT2G06550.1 | Symbols: | transposable element gene | chr2:2602742-2603484 REVERSE LENGTH=743 Length=743 Score = 1116 bits (604), Expect = 0.0 Identities = 697/743 (94%), Gaps = 1/743 (0%) Strand=Plus/Plus Query 1 ACAGAAATGTACTGCCGCAATTAGGCGTCTGGCATATGGTCTTGCAAACGATGCGATGGA 60 ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| | Sbjct 1 ACAGAAATGTACTACCGCAATTAGGCGTCTGGCATATGGTCTTGCAAACAATGTGATGAA 60 Query 61 CGAATACCTCCGCATGGGCGCAACCACTGTGAGCCAAGCACTAGAGAATTTTGTAGATGG 120 || ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| Sbjct 61 CGCATACCTCCGCATGGGCGCAACCACTATGAGTCAAGCACTAGAGAATTTTGTAGATGG 120 Query 121 CATAATAAATTTATTCCAAGATGAATATTTGAGGCGGCCTACACGTGAGGATCTAGAACG 180 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 121 CATAATAAATTTATTCCAAGATGAATATTTGAGGCGACCTACACGTGAGGATCTAGAACG 180 Query 181 ATTACTTCATTCTGGAAAGGAACGTGGATTTCCGGGAATGGTAGGAAGCATTGACTGTAT 240 |||||||||| |||||| ||||| || |||||||||||||||||||||||||||||||| Sbjct 181 GTTACTTCATTTTGGAAAAGAACGCGGTTTTCCGGGAATGGTAGGAAGCATTGACTGTAT 240 Query 241 GCATTGGGAGTGGAAGAATTGTCCTACGGCTTGGAAAGGACAGTATTCACGCGGACATGG 300 ||||| ||||||||| |||||| |||| ||||||||||| |||||||||||||||||||| Sbjct 241 GCATTAGGAGTGGAATAATTGTACTACAGCTTGGAAAGGGCAGTATTCACGCGGACATGG 300 Query 301 AAAACCCACTATTGTTTTAGAGGCCGTGGCATCACAAGATTTATGGATTTGGCATGCttt 360 |||| |||||||| |||||||||||||| ||| |||||| |||||||||| |||||||| Sbjct 301 AAAATCCACTATTATTTTAGAGGCCGTGACATTTCAAGATCTATGGATTTGACATGCTTT 360 Query 361 ttttGGGGCTCCAGGTACGTGTAATGATATAAATGTTCTTGACCGCTCACCGGTGTTTGA 420 |||||||| || || |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 361 TTTTGGGGTTCAAG-TACGTGTAATGATATAAATGTTCTTGACCGCTCACCGGTGGTTGA 419 Query 421 TGATATATTAGAAGGTCGAGCTCCACGACTCACGTACGAAGTCAATGGACATCAATACAA 480 |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||| Sbjct 420 TGATATATTAGAAGGTCGAGCTCCACGACTCAAGTACGAAATCAATGGACATCAAAACAA 479 Query 481 AATGGGTTATTACCTCACAGATGGTATATATCCGAAGTGGGCAACATTCATCCAATCAAT 540 ||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||| Sbjct 480 AATGGGTTATTACCTCACATATGATATATATCCGAAGTGGGGAACATTCATCCAATCAAT 539 Query 541 TACCTGCCCACAAGGACCGAAAGCATCATTATTTGCTAGTTGTCAAGAAGCAGTGAGAAA 600 |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TACCCGTCCACGAGGACCGAAAGCATCATTATTTGCTAGTTGTCAAGAAGCAGTGAGAAA 599 Query 601 AGATGTCGAGCGTGCTTTTGGAGTCTTGCAGGCTCGGTTTGCTATTATTCGAAACCCAGG 660 ||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||| ||| Sbjct 600 AGATGTCGAACGTGCTTTTGGAGTCTTGCAGGCTCAGTTTGCTATTATTTGAAACCTAGG 659 Query 661 TCTGTTTTGGGATAAAGAGCGAATGGGCAAGATAATGAGAGCATGTATCATATTGCACAA 720 ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 660 TCTGTTTTGGGATAAAGAGGGAATGGGCAAAATAATGAGAGCATGTATCATATTGCACAA 719 Query 721 TATGATTGTAGAAGATGAACGAG 743 ||||||| |||||||| |||||| Sbjct 720 TATGATTATAGAAGATAAACGAG 742 > AT4G01975.1 | Symbols: | transposable element gene | chr4:858636-862475 REVERSE LENGTH=3840 Length=3840 Score = 374 bits (202), Expect = 8e-103 Identities = 439/551 (80%), Gaps = 26/551 (5%) Strand=Plus/Plus Query 206 GGA-TTTCCGGGAATGGTAGGAAGCATTGACTGTATGCATTGGGAGTGGAAGAATTGTCC 264 ||| |||| ||| ||| | |||||||| ||||||||||||||||||||||||||||| || Sbjct 549 GGATTTTCAGGG-ATGATTGGAAGCATCGACTGTATGCATTGGGAGTGGAAGAATTGCCC 607 Query 265 TACGGCTTGGAAAGGACAGTATTCACGCGGA-CATGGAAAACCCACTATTGTTTTAGAGG 323 || |||||||||| |||||| | || || | ||||||||| |||||||||||||||| Sbjct 608 CACCTCTTGGAAAGGCCAGTATACGCGAGGCTC-TGGAAAACCAACTATTGTTTTAGAGG 666 Query 324 CCGTGGCATCACAAGATTTATGGATTTGGCATGCtttttttGGGGCTCCAGGTACGTGTA 383 | || |||||||||||| | ||||| || || || |||||||| ||| |||||| | || Sbjct 667 CAGTCGCATCACAAGATCTCTGGATATGACACGCGTTTTTTGGACCTCTAGGTACCT-TA 725 Query 384 AT-GATATAAATGTTCTTGACCGCTCACCGGTGTTTGATGATATATTAGAAGGTCGAGCT 442 | ||||| ||| ||||||| || ||||| || |||||||| || ||| ||||||||||| Sbjct 726 AACGATATCAATATTCTTGATCGATCACCAGTTTTTGATGAAATTTTACAAGGTCGAGCT 785 Query 443 CCACGAC-TCACGT-ACGAAGTCAATGGAC-ATCAATACAAAATGGGTTATTACCTCACA 499 ||| | | ||| | || ||||| |||| | | || || ||| ||| || |||||| Sbjct 786 CCAA-ATGTG-CGTTATGAGGTCAACGGACGAG-AGTATAATTTGGCTTACTATCTCACA 842 Query 500 GATGGTATATATCCGAAGTGGGCAACATTCATCCAATCAATT--ACCTGCCCACAAGGAC 557 ||||||||||| ||||| ||||| || || || ||||| ||| || | || |||||| | Sbjct 843 GATGGTATATAACCGAAATGGGCGACTTTTATACAATCTATTCGACTT-CC-ACAAGGTC 900 Query 558 CGAAAG-CATCATTATTTGC-T-AGTTGTCAAGAAGCAGTGAGAAAAGATGTCGAGCGTG 614 |||| |||| |||||||| | | | ||||||||| || | |||||||||||||||| Sbjct 901 -GAAAATCATCTTTATTTGCATCA-TA-TCAAGAAGCCGTTCGTAAAGATGTCGAGCGTG 957 Query 615 CTTTTGGAGTCTTGCAGGCTCGGTTTG-CTATTATTCGAAACCCAGGTCTGT-TTTGGGA 672 | |||||||| ||| | ||||||||| | |||||| |||||||| ||| | ||||||| Sbjct 958 CATTTGGAGTATTGTAAGCTCGGTTTCAC-ATTATTAAAAACCCAGCTCT-TATTTGGGA 1015 Query 673 TAAAGAGCGAATGGGCAAGATAATGAGAGCATGTATCATATTGCACAATATGATTGTAGA 732 ||| || ||| || || || ||| | ||||||||||||||||||||||||||||| || Sbjct 1016 TAAGGAAAAAATAGGAAATATTATGCGGGCATGTATCATATTGCACAATATGATTGTTGA 1075 Query 733 AGATGAACGAG 743 ||| ||||||| Sbjct 1076 AGACGAACGAG 1086 > AT5G28888.1 | Symbols: | transposable element gene | chr5:10902105-10903015 REVERSE LENGTH=911 Length=911 Score = 294 bits (159), Expect = 7e-79 Identities = 389/495 (79%), Gaps = 35/495 (7%) Strand=Plus/Plus Query 270 CTTGGAAAGGACAGTATTCACGCG-GAC-ATGGAAAACCCACTATTGTTTTAGAGGCCGT 327 |||||||||| ||||| | ||||| | | ||||||||| || |||||||||||||| || Sbjct 227 CTTGGAAAGGCCAGTA-T-ACGCGAGGCTCTGGAAAACCAACCATTGTTTTAGAGGCAGT 284 Query 328 GGCATCACAAGATTTATGGATTTGGCATGC-tttttttGGGGCTCCAGGTACGTGT-AAT 385 |||||||||||| | ||||| ||||| || ||||||||| |||||||||| | | || Sbjct 285 CGCATCACAAGATCTCTGGATATGGCACGCATTTTTTTGGACCTCCAGGTACCT-TAAAC 343 Query 386 GATATAAATGTTCTTGACCGCTCACCGGTGTTTGATGATATATTAGAAGGTCGAGCTCCA 445 ||||| ||| ||||||| || ||||| || |||||||| || ||| |||||||||||||| Sbjct 344 GATATCAATATTCTTGATCGATCACCAGTTTTTGATGAAATTTTACAAGGTCGAGCTCCA 403 Query 446 CGACTCACG-TACGAA-GTCAA--TGGACA-TC-A-A-TACAAAATGGGTTATTACCTCA 497 | | || ||| || ||||| | ||| | | | || || ||| ||| || |||| Sbjct 404 -AATTTGCGTTAC-AAGGTCAACGTCAACAGACGAGAGTATAATTTGGCTTACTATCTCA 461 Query 498 CAGATGGTATATATCCGAAGTGGGCA-ACATTCATCCAATCAATTAC--CTGCCCACAAG 554 ||||||||||||||||||| | || | || || |||||||| ||| | || ||||||| Sbjct 462 CAGATGGTATATATCCGAAAT-GGAAGACTTTTATCCAATCTATT-CGACT-TCCACAAG 518 Query 555 GACCG-AAAGCATCATTATTTGCTAGT--TGTCAAGAAGCAGTGAGAAAAGATGTCGAGC 611 | || ||| |||| |||||||| | | | ||||||| | || | ||||||||||||| Sbjct 519 G-TCGAAAATCATCTTTATTTGC-A-TCATATCAAGAAACCGTCCGTAAAGATGTCGAGC 575 Query 612 GTGCTTTTGGAGTCTTGCAGGCTCGGTTTGC-TATTATTCGAAACCCAGGTCTGT-TTTG 669 |||| |||||||| ||||| ||||||||| | |||||| ||||||| ||| | |||| Sbjct 576 GTGCATTTGGAGTATTGCAAGCTCGGTTT-CACATTATTAAAAACCCAACTCT-TATTTG 633 Query 670 GGATAAAGAGCGAAT-GGGCAAGATAATGAGAGCATGTATCATATTGCACAATATGATTG 728 |||||| || ||| || || || ||| || ||||||||||||||||||||||||||| Sbjct 634 GGATAAGGAAAAAATATGG-AATATTATGCGAACATGTATCATATTGCACAATATGATTG 692 Query 729 TAGAAGATGAACGAG 743 | ||||| ||||||| Sbjct 693 TTGAAGACGAACGAG 707 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36068117546 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5