BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488660
Length=743
Score E
Sequences producing significant alignments: (Bits) Value
AT2G06550.1 | Symbols: | transposable element gene | chr2:2602... 1116 0.0
AT4G01975.1 | Symbols: | transposable element gene | chr4:8586... 374 8e-103
AT5G28888.1 | Symbols: | transposable element gene | chr5:1090... 294 7e-79
> AT2G06550.1 | Symbols: | transposable element gene | chr2:2602742-2603484
REVERSE LENGTH=743
Length=743
Score = 1116 bits (604), Expect = 0.0
Identities = 697/743 (94%), Gaps = 1/743 (0%)
Strand=Plus/Plus
Query 1 ACAGAAATGTACTGCCGCAATTAGGCGTCTGGCATATGGTCTTGCAAACGATGCGATGGA 60
||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| |
Sbjct 1 ACAGAAATGTACTACCGCAATTAGGCGTCTGGCATATGGTCTTGCAAACAATGTGATGAA 60
Query 61 CGAATACCTCCGCATGGGCGCAACCACTGTGAGCCAAGCACTAGAGAATTTTGTAGATGG 120
|| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 61 CGCATACCTCCGCATGGGCGCAACCACTATGAGTCAAGCACTAGAGAATTTTGTAGATGG 120
Query 121 CATAATAAATTTATTCCAAGATGAATATTTGAGGCGGCCTACACGTGAGGATCTAGAACG 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 CATAATAAATTTATTCCAAGATGAATATTTGAGGCGACCTACACGTGAGGATCTAGAACG 180
Query 181 ATTACTTCATTCTGGAAAGGAACGTGGATTTCCGGGAATGGTAGGAAGCATTGACTGTAT 240
|||||||||| |||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 181 GTTACTTCATTTTGGAAAAGAACGCGGTTTTCCGGGAATGGTAGGAAGCATTGACTGTAT 240
Query 241 GCATTGGGAGTGGAAGAATTGTCCTACGGCTTGGAAAGGACAGTATTCACGCGGACATGG 300
||||| ||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||
Sbjct 241 GCATTAGGAGTGGAATAATTGTACTACAGCTTGGAAAGGGCAGTATTCACGCGGACATGG 300
Query 301 AAAACCCACTATTGTTTTAGAGGCCGTGGCATCACAAGATTTATGGATTTGGCATGCttt 360
|||| |||||||| |||||||||||||| ||| |||||| |||||||||| ||||||||
Sbjct 301 AAAATCCACTATTATTTTAGAGGCCGTGACATTTCAAGATCTATGGATTTGACATGCTTT 360
Query 361 ttttGGGGCTCCAGGTACGTGTAATGATATAAATGTTCTTGACCGCTCACCGGTGTTTGA 420
|||||||| || || |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 TTTTGGGGTTCAAG-TACGTGTAATGATATAAATGTTCTTGACCGCTCACCGGTGGTTGA 419
Query 421 TGATATATTAGAAGGTCGAGCTCCACGACTCACGTACGAAGTCAATGGACATCAATACAA 480
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||
Sbjct 420 TGATATATTAGAAGGTCGAGCTCCACGACTCAAGTACGAAATCAATGGACATCAAAACAA 479
Query 481 AATGGGTTATTACCTCACAGATGGTATATATCCGAAGTGGGCAACATTCATCCAATCAAT 540
||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||
Sbjct 480 AATGGGTTATTACCTCACATATGATATATATCCGAAGTGGGGAACATTCATCCAATCAAT 539
Query 541 TACCTGCCCACAAGGACCGAAAGCATCATTATTTGCTAGTTGTCAAGAAGCAGTGAGAAA 600
|||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TACCCGTCCACGAGGACCGAAAGCATCATTATTTGCTAGTTGTCAAGAAGCAGTGAGAAA 599
Query 601 AGATGTCGAGCGTGCTTTTGGAGTCTTGCAGGCTCGGTTTGCTATTATTCGAAACCCAGG 660
||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 600 AGATGTCGAACGTGCTTTTGGAGTCTTGCAGGCTCAGTTTGCTATTATTTGAAACCTAGG 659
Query 661 TCTGTTTTGGGATAAAGAGCGAATGGGCAAGATAATGAGAGCATGTATCATATTGCACAA 720
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 660 TCTGTTTTGGGATAAAGAGGGAATGGGCAAAATAATGAGAGCATGTATCATATTGCACAA 719
Query 721 TATGATTGTAGAAGATGAACGAG 743
||||||| |||||||| ||||||
Sbjct 720 TATGATTATAGAAGATAAACGAG 742
> AT4G01975.1 | Symbols: | transposable element gene | chr4:858636-862475
REVERSE LENGTH=3840
Length=3840
Score = 374 bits (202), Expect = 8e-103
Identities = 439/551 (80%), Gaps = 26/551 (5%)
Strand=Plus/Plus
Query 206 GGA-TTTCCGGGAATGGTAGGAAGCATTGACTGTATGCATTGGGAGTGGAAGAATTGTCC 264
||| |||| ||| ||| | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 549 GGATTTTCAGGG-ATGATTGGAAGCATCGACTGTATGCATTGGGAGTGGAAGAATTGCCC 607
Query 265 TACGGCTTGGAAAGGACAGTATTCACGCGGA-CATGGAAAACCCACTATTGTTTTAGAGG 323
|| |||||||||| |||||| | || || | ||||||||| ||||||||||||||||
Sbjct 608 CACCTCTTGGAAAGGCCAGTATACGCGAGGCTC-TGGAAAACCAACTATTGTTTTAGAGG 666
Query 324 CCGTGGCATCACAAGATTTATGGATTTGGCATGCtttttttGGGGCTCCAGGTACGTGTA 383
| || |||||||||||| | ||||| || || || |||||||| ||| |||||| | ||
Sbjct 667 CAGTCGCATCACAAGATCTCTGGATATGACACGCGTTTTTTGGACCTCTAGGTACCT-TA 725
Query 384 AT-GATATAAATGTTCTTGACCGCTCACCGGTGTTTGATGATATATTAGAAGGTCGAGCT 442
| ||||| ||| ||||||| || ||||| || |||||||| || ||| |||||||||||
Sbjct 726 AACGATATCAATATTCTTGATCGATCACCAGTTTTTGATGAAATTTTACAAGGTCGAGCT 785
Query 443 CCACGAC-TCACGT-ACGAAGTCAATGGAC-ATCAATACAAAATGGGTTATTACCTCACA 499
||| | | ||| | || ||||| |||| | | || || ||| ||| || ||||||
Sbjct 786 CCAA-ATGTG-CGTTATGAGGTCAACGGACGAG-AGTATAATTTGGCTTACTATCTCACA 842
Query 500 GATGGTATATATCCGAAGTGGGCAACATTCATCCAATCAATT--ACCTGCCCACAAGGAC 557
||||||||||| ||||| ||||| || || || ||||| ||| || | || |||||| |
Sbjct 843 GATGGTATATAACCGAAATGGGCGACTTTTATACAATCTATTCGACTT-CC-ACAAGGTC 900
Query 558 CGAAAG-CATCATTATTTGC-T-AGTTGTCAAGAAGCAGTGAGAAAAGATGTCGAGCGTG 614
|||| |||| |||||||| | | | ||||||||| || | ||||||||||||||||
Sbjct 901 -GAAAATCATCTTTATTTGCATCA-TA-TCAAGAAGCCGTTCGTAAAGATGTCGAGCGTG 957
Query 615 CTTTTGGAGTCTTGCAGGCTCGGTTTG-CTATTATTCGAAACCCAGGTCTGT-TTTGGGA 672
| |||||||| ||| | ||||||||| | |||||| |||||||| ||| | |||||||
Sbjct 958 CATTTGGAGTATTGTAAGCTCGGTTTCAC-ATTATTAAAAACCCAGCTCT-TATTTGGGA 1015
Query 673 TAAAGAGCGAATGGGCAAGATAATGAGAGCATGTATCATATTGCACAATATGATTGTAGA 732
||| || ||| || || || ||| | ||||||||||||||||||||||||||||| ||
Sbjct 1016 TAAGGAAAAAATAGGAAATATTATGCGGGCATGTATCATATTGCACAATATGATTGTTGA 1075
Query 733 AGATGAACGAG 743
||| |||||||
Sbjct 1076 AGACGAACGAG 1086
> AT5G28888.1 | Symbols: | transposable element gene | chr5:10902105-10903015
REVERSE LENGTH=911
Length=911
Score = 294 bits (159), Expect = 7e-79
Identities = 389/495 (79%), Gaps = 35/495 (7%)
Strand=Plus/Plus
Query 270 CTTGGAAAGGACAGTATTCACGCG-GAC-ATGGAAAACCCACTATTGTTTTAGAGGCCGT 327
|||||||||| ||||| | ||||| | | ||||||||| || |||||||||||||| ||
Sbjct 227 CTTGGAAAGGCCAGTA-T-ACGCGAGGCTCTGGAAAACCAACCATTGTTTTAGAGGCAGT 284
Query 328 GGCATCACAAGATTTATGGATTTGGCATGC-tttttttGGGGCTCCAGGTACGTGT-AAT 385
|||||||||||| | ||||| ||||| || ||||||||| |||||||||| | | ||
Sbjct 285 CGCATCACAAGATCTCTGGATATGGCACGCATTTTTTTGGACCTCCAGGTACCT-TAAAC 343
Query 386 GATATAAATGTTCTTGACCGCTCACCGGTGTTTGATGATATATTAGAAGGTCGAGCTCCA 445
||||| ||| ||||||| || ||||| || |||||||| || ||| ||||||||||||||
Sbjct 344 GATATCAATATTCTTGATCGATCACCAGTTTTTGATGAAATTTTACAAGGTCGAGCTCCA 403
Query 446 CGACTCACG-TACGAA-GTCAA--TGGACA-TC-A-A-TACAAAATGGGTTATTACCTCA 497
| | || ||| || ||||| | ||| | | | || || ||| ||| || ||||
Sbjct 404 -AATTTGCGTTAC-AAGGTCAACGTCAACAGACGAGAGTATAATTTGGCTTACTATCTCA 461
Query 498 CAGATGGTATATATCCGAAGTGGGCA-ACATTCATCCAATCAATTAC--CTGCCCACAAG 554
||||||||||||||||||| | || | || || |||||||| ||| | || |||||||
Sbjct 462 CAGATGGTATATATCCGAAAT-GGAAGACTTTTATCCAATCTATT-CGACT-TCCACAAG 518
Query 555 GACCG-AAAGCATCATTATTTGCTAGT--TGTCAAGAAGCAGTGAGAAAAGATGTCGAGC 611
| || ||| |||| |||||||| | | | ||||||| | || | |||||||||||||
Sbjct 519 G-TCGAAAATCATCTTTATTTGC-A-TCATATCAAGAAACCGTCCGTAAAGATGTCGAGC 575
Query 612 GTGCTTTTGGAGTCTTGCAGGCTCGGTTTGC-TATTATTCGAAACCCAGGTCTGT-TTTG 669
|||| |||||||| ||||| ||||||||| | |||||| ||||||| ||| | ||||
Sbjct 576 GTGCATTTGGAGTATTGCAAGCTCGGTTT-CACATTATTAAAAACCCAACTCT-TATTTG 633
Query 670 GGATAAAGAGCGAAT-GGGCAAGATAATGAGAGCATGTATCATATTGCACAATATGATTG 728
|||||| || ||| || || || ||| || |||||||||||||||||||||||||||
Sbjct 634 GGATAAGGAAAAAATATGG-AATATTATGCGAACATGTATCATATTGCACAATATGATTG 692
Query 729 TAGAAGATGAACGAG 743
| ||||| |||||||
Sbjct 693 TTGAAGACGAACGAG 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36068117546
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5