BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488665
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18160.1 | Symbols: | F-box and associated interaction doma... 1415 0.0
> AT5G18160.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:6002770-6003909 FORWARD LENGTH=1140
Length=1140
Score = 1415 bits (766), Expect = 0.0
Identities = 1019/1136 (90%), Gaps = 37/1136 (3%)
Strand=Plus/Plus
Query 58 ACAAGACAATCTTCATCTACATTGAAAACAAGACAATCCTCACATGGTAATCACAAATCT 117
|||| | |||||||||||||||||| ||||| || ||||||||||||||||| ||||
Sbjct 31 ACAACAAAATCTTCATCTACATTGACGACAAG---ATGCTCACATGGTAATCACATATCT 87
Query 118 CAGTCAAACTCGATTCCTTTCGACATAACCTTTGAGATACTCTCAAGACTTCCTGCCAAA 177
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||
Sbjct 88 CAGTCAAACTCGATTCCTCTCGACATAACCATTGAGATACTCTCAAGACTTCCTGCGAAA 147
Query 178 TCAATCGTGAGATATCGCTCCGTCTCTAAGCTCTGGTCGTTCATTACCACCACACCAGAG 237
|||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 148 TCAATCGTCAGATCTCGCTCCGTCTCTAAGCTCTGGTCGTCCATTACCACCACACCAGAG 207
Query 238 TTCATCAAGAC-TCGGTCCAAGAAGACATCACCACCGTGTGTTCTACTAATCTTCCGAAA 296
||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 208 TTCATCAAG-CATCGGTCCAAGAAGACATCACCACCTTGTGTTCTACTAATCTTCCGAAA 266
Query 297 ACACGACAAGCTGATTGTGTTCTCGTC-CCCGCAACACAAGAATACTTATTCTTATGTGG 355
||||||||||||||| || |||||||| ||| |||||| |||||||||||||| |||||
Sbjct 267 ACACGACAAGCTGATCGTTTTCTCGTCTCCC-CAACACCAGAATACTTATTCTCATGTGC 325
Query 356 AAGATTATCACATCGAAATCCCCAAGAATGGTTTCATCCGTCGTCTTGATTCCGTTCACG 415
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 326 AAGATTATCACATTGAAATCCCCAAGAATGGTTTCATCCGTCGTCTTGATTCCGTCCACG 385
Query 416 GGTTGATTTGCTTTGAAGGTTCTAAACAGCTCGTGATTTGGAACCCTACCATGAAACGAT 475
| ||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 386 GTTTGATCTGCTTAGAAGGTTCTAAACAGCTCGTGATTTGTAACCCTACTTTGAAACGAT 445
Query 476 TCTTTACTTTACCTGAGCCTCAAGGCAACGGAGACGAATACTACGTAGGAGGGTTTTTGG 535
|||| ||||||||||||||||||||| ||| ||||||||| |||||||||||||| |||
Sbjct 446 TCTTCCCTTTACCTGAGCCTCAAGGCACCGGTGACGAATACAACGTAGGAGGGTTTCTGG 505
Query 536 GATATGAACCGGTTGAGGGTAAATACAAAGCATTGTGCATTGTCAGAGGATGGAACACTC 595
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 GATATGAACCGATAGAGGGTAAATACAAAGCATTGTGCATTGTCAGAGGATGGAACACTC 565
Query 596 AAGTTCTTACATTGGGAGTTCAAGAATCATGGAGAGTAGTAACCAAAGGTGGCTTTTTC- 654
||||||||||||||| | |||||||||||||||||||| | ||||| ||||| | |
Sbjct 566 AAGTTCTTACATTGGAAATTCAAGAATCATGGAGAGTA--A-CCAAACCTGGCTATA-CA 621
Query 655 CATTGGCCTACTAAAGACACTGGACGATGCATTAATGGAGTAATCTACTATAAAGCG-TT 713
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 622 CATTGGCCTACTAAAGATACTGGACGATGCATTAATGGAGTTATCTACTATAAAGCTATT 681
Query 714 -T----GATATGGCTCCAAGGCATGCTATAATTAGCTTTGATCTCAGATATGAAGAGTTT 768
| |||| || ||||||||||| |||| || ||||||||||||||||||||||||||
Sbjct 682 ATATTTGATAGGGTTCCAAGGCATGTTATATTTGGCTTTGATCTCAGATATGAAGAGTTT 741
Query 769 AAAC-TGATTGATTTTCCGATGCGTGATTATGACCGCTTTCTTATGGTCTCTTATGAGGG 827
| || | ||||| |||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 742 ACACAT-ATTGAGTTTCCGATGCGTAATTATGACCGCTTTCTTATGGTATCTTATGAGGG 800
Query 828 AAGGTTGGCTTTGATAAGTGACACTAGCTCTGTTGTTGAAATATGGAGTTTGGAGGATGC 887
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 801 AAGGTTGGCTTTGATAAGTTCCACTAGCTCTGTTGTTGAAATCTGGAGTTTGGAGGATGC 860
Query 888 AGGGAATA-AAAAGTGGTCGTATGGACAGTTTCATTTAAGTCTTCCTCCTAACAAATATC 946
||||||| |||| |||||||||| ||||||||||||| |||||||||| |||| |
Sbjct 861 AGGGAATCGAAAA-TGGTCGTATGAACAGTTTCATTTATGTCTTCCTCCCAACA-----C 914
Query 947 TGAAGTGGTTGGATCTTAGGGGTGTTACTGATGGTGGTGAGCTTATTTATACAGGAGTGA 1006
|||| | | | |||| ||||| ||||| ||||||||||||||| |||||| | |
Sbjct 915 --AAGTC-T-G-A----AGGG-TGTTATTGATGCTGGTGAGCTTATTTACACAGGATTTA 964
Query 1007 GTTTGAATGGATCGTTCTGTGTTGTGTATTTTGACCCGAAGAAAAGCAGTATAAGAGAGA 1066
|||||||| ||||||||||||||||||||||||| || ||||||| || ||| ||||| |
Sbjct 965 GTTTGAATAGATCGTTCTGTGTTGTGTATTTTGATCCTAAGAAAAACAATATCAGAGAAA 1024
Query 1067 CTAAGTTTCGAGGAATTACGGGTAACGAGATTTGGCAACCTGATAGACTTGGATTTGATC 1126
| ||||||| ||||||| ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1025 CCAAGTTTCAAGGAATTGCGGATAACCAGATTTGGCAACCTGATAGACTTGGATTTGATC 1084
Query 1127 TTGTGAATGACTTTTATGTTTTACCAAATCACATTGAGAGTTTCATTTCATTTTAA 1182
||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 1085 TTGTGAATGACTTTTATGTATTACCAAATCACATTGAGAGTTTCATCTCGTTTTAA 1140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58031830020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5