BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488668
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18030.1 | Symbols: | SAUR-like auxin-responsive protein fa... 449 8e-126
AT5G18060.1 | Symbols: | SAUR-like auxin-responsive protein fa... 433 8e-121
AT5G18010.1 | Symbols: | SAUR-like auxin-responsive protein fa... 433 8e-121
AT5G18020.1 | Symbols: | SAUR-like auxin-responsive protein fa... 425 1e-118
AT5G18050.1 | Symbols: | SAUR-like auxin-responsive protein fa... 399 8e-111
AT5G18080.1 | Symbols: | SAUR-like auxin-responsive protein fa... 394 4e-109
AT3G03840.1 | Symbols: | SAUR-like auxin-responsive protein fa... 261 4e-69
AT3G03820.1 | Symbols: | SAUR-like auxin-responsive protein fa... 195 4e-49
AT4G38825.1 | Symbols: | SAUR-like auxin-responsive protein fa... 191 5e-48
AT4G38820.1 | Symbols: | unknown protein; Has 4 Blast hits to ... 191 5e-48
> AT5G18030.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5968435-5968938 FORWARD LENGTH=504
Length=504
Score = 449 bits (243), Expect = 8e-126
Identities = 280/296 (95%), Gaps = 9/296 (3%)
Strand=Plus/Plus
Query 1 AGAAATGACTTTGGTGAGAAGTCTATTGGGTGCAAAGAAGATTCTAAGCCGCTCCACCGC 60
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 89 AGATATGGCTTTGGTGAGAAGTCTATTGGGTGCAAAGAAGATTCTAAGCCGCTCCA-C-C 146
Query 61 AGCAGCCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAGAA 120
||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 147 -GCA---TCGGCGGCACCAAAAGGGTTTCTTGCGGTGTACGTAGGAGAGAGCCAGAAGAA 202
Query 121 GAGATATTTGGTGCCGCTCTCATACTTGAGCCAACCTTCATTTCAAGCTCTTCTCAGTAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 GAGATATTTGGTGCCGCTCTCATACTTGAGCCAACCTTCATTTCAAGCTCTTCTCAGTAA 262
Query 181 ATCCGAGGAAGAGTTTGGATTCGATCATCCAATGGGTGGCTTAACGATCCCTTGTCCTGA 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 263 ATCCGAGGAAGAGTTTGGATTTGATCATCCAATGGGTGGCTTAACGATCCCTTGTCCTGA 322
Query 241 AGATACCTTCATCACTGTGACTTCTCGGCTCCAATGATGAT--T-ATCCAACATTT 293
|||||||||||||| ||||||||||||||||||||||| || | |||| ||||||
Sbjct 323 AGATACCTTCATCAATGTGACTTCTCGGCTCCAATGATCATGATGATCCGACATTT 378
> AT5G18060.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5975954-5976496 FORWARD LENGTH=543
Length=543
Score = 433 bits (234), Expect = 8e-121
Identities = 272/291 (93%), Gaps = 0/291 (0%)
Strand=Plus/Plus
Query 1 AGAAATGACTTTGGTGAGAAGTCTATTGGGTGCAAAGAAGATTCTAAGCCGCTCCACCGC 60
||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||| ||||
Sbjct 73 AGAAATGGCTTTGGTGAGAAGTCTATTGGTTGCAAAGAAGATTCTTAGCCGCTCCGCCGC 132
Query 61 AGCAGCCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAGAA 120
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 AGCAGTCTCGGCGCCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAGAA 192
Query 121 GAGATATTTGGTGCCGCTCTCATACTTGAGCCAACCTTCATTTCAAGCTCTTCTCAGTAA 180
||||||||| ||||| ||||||||||||| ||| ||||| ||||||||||| ||||||||
Sbjct 193 GAGATATTTAGTGCCACTCTCATACTTGAACCAGCCTTCTTTTCAAGCTCTGCTCAGTAA 252
Query 181 ATCCGAGGAAGAGTTTGGATTCGATCATCCAATGGGTGGCTTAACGATCCCTTGTCCTGA 240
|||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 253 ATCCGAAGAAGAGTTTGGGTTCGATCATCCGATGGGTGGCTTAACGATCCCTTGTCCCGA 312
Query 241 AGATACCTTCATCACTGTGACTTCTCGGCTCCAATGATGATTATCCAACAT 291
|||||| ||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 313 AGATACTTTCATCAATGTGACTTCTCGGCTCCATTGATGATTATCCAACAT 363
Score = 113 bits (61), Expect = 1e-24
Identities = 85/96 (89%), Gaps = 4/96 (4%)
Strand=Plus/Plus
Query 291 TTTCCTTGTAAATAGAGG-Attttatt-tttcttttttgttttttttctttctctttctt 348
|||||||||||||||||| ||||| || || ||||||| |||||||| |||||||||| |
Sbjct 393 TTTCCTTGTAAATAGAGGAATTTT-TTGTTCCTTTTTT-TTTTTTTTTTTTCTCTTTCAT 450
Query 349 cttgaaagagttcttattatttttttGGAAGTGGAT 384
||||||| ||||||| | | ||||||||||||||||
Sbjct 451 CTTGAAAAAGTTCTTCTAAATTTTTTGGAAGTGGAT 486
> AT5G18010.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5962897-5963405 REVERSE LENGTH=509
Length=509
Score = 433 bits (234), Expect = 8e-121
Identities = 272/291 (93%), Gaps = 0/291 (0%)
Strand=Plus/Plus
Query 3 AAATGACTTTGGTGAGAAGTCTATTGGGTGCAAAGAAGATTCTAAGCCGCTCCACCGCAG 62
||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 99 AAATGGCTTTCGTGAGAAGTCTATTGGGAGCAAAGAAGATTCTAAGCCGCTCCACCGCAG 158
Query 63 CAGCCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAGAAGA 122
||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 159 CAGGATCTGCGGCACCAAAAGGGTTTCTTGCGGTGTACGTAGGAGAGAGCCAGAAGAAGA 218
Query 123 GATATTTGGTGCCGCTCTCATACTTGAGCCAACCTTCATTTCAAGCTCTTCTCAGTAAAT 182
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 219 GATATTTGGTGCCGCTCTCATACTTGAGCCAACCGTCATTTCAAGCTCTGCTCAGTAAAT 278
Query 183 CCGAGGAAGAGTTTGGATTCGATCATCCAATGGGTGGCTTAACGATCCCTTGTCCTGAAG 242
|||| ||||||||||| || | |||||| |||||||||||||||||||||||||| ||||
Sbjct 279 CCGAAGAAGAGTTTGGGTTTGCTCATCCGATGGGTGGCTTAACGATCCCTTGTCCCGAAG 338
Query 243 ATACCTTCATCACTGTGACTTCTCGGCTCCAATGATGATTATCCAACATTT 293
|||| ||||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 339 ATACTTTCATCAATGTGACTTCTCGGCTCCAATGAAGATGATCCAACATTT 389
> AT5G18020.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5966183-5966677 REVERSE LENGTH=495
Length=495
Score = 425 bits (230), Expect = 1e-118
Identities = 272/293 (93%), Gaps = 0/293 (0%)
Strand=Plus/Plus
Query 1 AGAAATGACTTTGGTGAGAAGTCTATTGGGTGCAAAGAAGATTCTAAGCCGCTCCACCGC 60
||| ||| |||| ||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 94 AGATATGGCTTTTGTGAGAAGTCTATTGGGAGCAAAGAAGATTCTAAGCCGCTCCACCAC 153
Query 61 AGCAGCCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAGAA 120
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 154 AGCAGCCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGTGAGAGCCAAAAGAA 213
Query 121 GAGATATTTGGTGCCGCTCTCATACTTGAGCCAACCTTCATTTCAAGCTCTTCTCAGTAA 180
||||||| ||||||| ||||||| || | ||| ||||||||||||||||||||||||||
Sbjct 214 GAGATATCTGGTGCCAATCTCATATTTAAACCAGCCTTCATTTCAAGCTCTTCTCAGTAA 273
Query 181 ATCCGAGGAAGAGTTTGGATTCGATCATCCAATGGGTGGCTTAACGATCCCTTGTCCTGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 274 ATCCGAGGAAGAGTTTGGATTCGATCATCCAATGGGTGGCTTAACGATCCCCTGTCCTGA 333
Query 241 AGATACCTTCATCACTGTGACTTCTCGGCTCCAATGATGATTATCCAACATTT 293
|||||| ||||||| ||||||||||||| ||||| |||||| | |||||||||
Sbjct 334 AGATACATTCATCAATGTGACTTCTCGGTTCCAACGATGATGAGCCAACATTT 386
> AT5G18050.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5974567-5975054 REVERSE LENGTH=488
Length=488
Score = 399 bits (216), Expect = 8e-111
Identities = 266/291 (91%), Gaps = 0/291 (0%)
Strand=Plus/Plus
Query 3 AAATGACTTTGGTGAGAAGTCTATTGGGTGCAAAGAAGATTCTAAGCCGCTCCACCGCAG 62
||||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 90 AAATGGCTCTGGTGAGAAGTCTACTGGGTGCAAAAAAGATTCTAAGCCGCTCCACCGCAG 149
Query 63 CAGCCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAGAAGA 122
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 150 CAGTCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAGAAAA 209
Query 123 GATATTTGGTGCCGCTCTCATACTTGAGCCAACCTTCATTTCAAGCTCTTCTCAGTAAAT 182
|||| || ||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||
Sbjct 210 GATACTTAGTGCCACTCTCATACTTGAACCAACCTTCTTTTCAAGCTCTGCTCAGTAAAT 269
Query 183 CCGAGGAAGAGTTTGGATTCGATCATCCAATGGGTGGCTTAACGATCCCTTGTCCTGAAG 242
| || || |||||||| || |||||||| ||||| ||||||||||| ||||||| |||||
Sbjct 270 CTGAAGATGAGTTTGGGTTTGATCATCCGATGGGGGGCTTAACGATACCTTGTCATGAAG 329
Query 243 ATACCTTCATCACTGTGACTTCTCGGCTCCAATGATGATTATCCAACATTT 293
|||| ||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 330 ATACGTTCATCAATGTGACTTCTCGGCTCCAATGATCATGATCCAACATTT 380
> AT5G18080.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5983840-5984112 FORWARD LENGTH=273
Length=273
Score = 394 bits (213), Expect = 4e-109
Identities = 254/274 (93%), Gaps = 2/274 (1%)
Strand=Plus/Plus
Query 5 ATGACTTTGGTGAGAAGTCTATTGGGTGCAAAGAAGATTCTAAGCCGCTCCACCGCAGCA 64
||| |||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1 ATGGCTTTCGTGAGAAGTCTATTGGGAGCAAAGAAGATTCTAAGCCGCTCCACCGGAGCA 60
Query 65 GCCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAGAAGAGA 124
| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GGATCTGCGGCACCAAAAGGGTTTCTTGCGGTGTACGTAGGAGAGAGCCAGAAGAAGAGA 120
Query 125 TATTTGGTGCC-GCTCTCATACTTGAGCCAACCTTCATTTCAAGCTCTTCTCAGTAAATC 183
||||||||||| | ||||||| || | ||| |||||||||||||||||||||||||||||
Sbjct 121 TATTTGGTGCCTG-TCTCATATTTAAACCAGCCTTCATTTCAAGCTCTTCTCAGTAAATC 179
Query 184 CGAGGAAGAGTTTGGATTCGATCATCCAATGGGTGGCTTAACGATCCCTTGTCCTGAAGA 243
||| |||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||
Sbjct 180 CGAAGAAGAGTTTGGATTTGATCATCCGATGGGAGGCTTAACGATCCCTTGTCCCGAAGA 239
Query 244 TACCTTCATCACTGTGACTTCTCGGCTCCAATGA 277
||||||||||| ||||||||||||||||||||||
Sbjct 240 TACCTTCATCAATGTGACTTCTCGGCTCCAATGA 273
> AT3G03840.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr3:981072-981798 FORWARD LENGTH=727
Length=727
Score = 261 bits (141), Expect = 4e-69
Identities = 193/217 (89%), Gaps = 7/217 (3%)
Strand=Plus/Plus
Query 74 GCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAG-A--AGAGATATTTG 130
|||||||||||||||||||||||||||||||| |||||||||||| | ||||||| ||
Sbjct 265 GCACCAAAAGGGTTTCTTGCAGTGTACGTAGGGGAGAGCCAGAAGAAGCAGAGATACTTA 324
Query 131 GTGC-CGCTCTCATACTTGAGCCAACC-TTCATTTCAAGCTCTTCTCAGTAAATCCGAGG 188
|||| | |||||||||||||||| || || ||||||| ||||||||||||||||||||
Sbjct 325 GTGCTAG-TCTCATACTTGAGCCAGCCATT-GTTTCAAGATCTTCTCAGTAAATCCGAGG 382
Query 189 AAGAGTTTGGATTCGATCATCCAATGGGTGGCTTAACGATCCCTTGTCCTGAAGATACCT 248
||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct 383 AAGAGTTCGGATTTGATCATCCGATGGGGGGCTTGACGATCCCTTGTCCTGAAGATACCT 442
Query 249 TCATCACTGTGACTTCTCGGCTCCAATGATGATTATC 285
|| ||||||| ||||||||| ||||| |||||| |||
Sbjct 443 TCCTCACTGTAACTTCTCGGATCCAAGGATGATCATC 479
> AT3G03820.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr3:976933-977223 REVERSE LENGTH=291
Length=291
Score = 195 bits (105), Expect = 4e-49
Identities = 180/215 (84%), Gaps = 10/215 (5%)
Strand=Plus/Plus
Query 74 GCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGA--A-GAAG-AGATAT-- 127
||||||||||||||||||||||||||||| || |||||||||| | |||| ||| |
Sbjct 79 GCACCAAAAGGGTTTCTTGCAGTGTACGTCGGTGAGAGCCAGAGGAAGAAGCAGAGACAC 138
Query 128 -TTGGTGCCGCTCTCATACTTGAGCCAACCTTCATTTCAAGCTCTTCTCAGT-AAATCCG 185
||| ||||| |||||||||||| ||| |||| ||||||||||| |||| | ||| | |
Sbjct 139 CTTG-TGCCGGTCTCATACTTGAACCAGCCTTTGTTTCAAGCTCTACTCA-TCAAAGCTG 196
Query 186 AGGAAGAGTTTGGATTCGATCATCCAATGGGTGGCTTAACGATCCCTTGTCCTGAAGATA 245
| |||||||| |||||| ||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 197 AAGAAGAGTTCGGATTCAATCATCCGATGGGCGGCTTGACGATCCCTTGTCCTGAAGATA 256
Query 246 CCTTCATCACTGTGACTTCTCGGCTCCAATGATGA 280
| ||| ||||||| || |||| | ||||| |||||
Sbjct 257 CTTTCCTCACTGTAACGTCTCAGATCCAAGGATGA 291
> AT4G38825.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr4:18121526-18122010 FORWARD LENGTH=485
Length=485
Score = 191 bits (103), Expect = 5e-48
Identities = 167/198 (84%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 75 CACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAGAAGAGATATTTGGTGC 134
|||||||||||||||||||||||||||| ||||| ||||||| ||| ||||| | ||||
Sbjct 154 CACCAAAAGGGTTTCTTGCAGTGTACGTTGGAGAAAGCCAGATGAAAAGATACATAGTGC 213
Query 135 C-GCTCTCATACTTGAGCCAACCTTCATTTCAAGCTCTTCTC-AGTAAATCCGAGGAAGA 192
| | ||||||| |||| ||| ||||||||||||||| || | |||||||| || ||||
Sbjct 214 CAG-TCTCATATTTGAACCAGCCTTCATTTCAAGCT-TTGTTGAGTAAATCTGAACAAGA 271
Query 193 GTTTGGATTCGATCATCCAATGGGTGGCTTAACGATCCCTTGTCCTGAAGATACCTTCAT 252
|||||| || |||||||||||||| ||||| || |||||||| |||| |||||| || ||
Sbjct 272 GTTTGGGTTTGATCATCCAATGGGCGGCTTGACCATCCCTTGCCCTGTAGATACATTTAT 331
Query 253 CACTGTGACTTCTCGGCT 270
||| || ||||||| |||
Sbjct 332 CACCGTCACTTCTCAGCT 349
> AT4G38820.1 | Symbols: | unknown protein; Has 4 Blast hits to
4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr4:18121543-18121975 REVERSE LENGTH=433
Length=433
Score = 191 bits (103), Expect = 5e-48
Identities = 167/198 (84%), Gaps = 4/198 (2%)
Strand=Plus/Minus
Query 75 CACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAGAAGAGATATTTGGTGC 134
|||||||||||||||||||||||||||| ||||| ||||||| ||| ||||| | ||||
Sbjct 297 CACCAAAAGGGTTTCTTGCAGTGTACGTTGGAGAAAGCCAGATGAAAAGATACATAGTGC 238
Query 135 C-GCTCTCATACTTGAGCCAACCTTCATTTCAAGCTCTTCTC-AGTAAATCCGAGGAAGA 192
| | ||||||| |||| ||| ||||||||||||||| || | |||||||| || ||||
Sbjct 237 CAG-TCTCATATTTGAACCAGCCTTCATTTCAAGCT-TTGTTGAGTAAATCTGAACAAGA 180
Query 193 GTTTGGATTCGATCATCCAATGGGTGGCTTAACGATCCCTTGTCCTGAAGATACCTTCAT 252
|||||| || |||||||||||||| ||||| || |||||||| |||| |||||| || ||
Sbjct 179 GTTTGGGTTTGATCATCCAATGGGCGGCTTGACCATCCCTTGCCCTGTAGATACATTTAT 120
Query 253 CACTGTGACTTCTCGGCT 270
||| || ||||||| |||
Sbjct 119 CACCGTCACTTCTCAGCT 102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19906028604
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5