BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488674
Length=1076
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18090.1 | Symbols: | AP2/B3-like transcriptional factor fa... 898 0.0
> AT5G18090.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr5:5985365-5987165 FORWARD LENGTH=1248
Length=1248
Score = 898 bits (486), Expect = 0.0
Identities = 571/612 (93%), Gaps = 5/612 (1%)
Strand=Plus/Plus
Query 1 aaaa-aaaTAGAAAGAGAATTAGTGAGTCATAAATCagagagcgagagaaaagtagtgag 59
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 10 AAAACAAATAGAAAGAGAATTAGTGAGTCATAAATCAGAGAGCGAGAGAAAAGTGGTGAG 69
Query 60 aaatagagtgagaggttaaggaaagagagaacaatgaagaaCAGAGCTTTTGGTCAGATT 119
| |||||||| |||||||| |||||||||||| |||||||||| ||| ||||||||||||
Sbjct 70 ACATAGAGTGGGAGGTTAACGAAAGAGAGAACGATGAAGAACAAAGCGTTTGGTCAGATT 129
Query 120 ATGGATGATGCAGAGAATCCAGGGTTCTTCAAGATCCTTCGACCG-GCAGATTTATCATC 178
|||||||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||
Sbjct 130 ATGGATGATGCAGAGAATCCCGGGTTCTTCAAGATCCTTCGA-AGTGCAGATTTATCGTC 188
Query 179 TGAAATCATGAGAGGGATCCCTCTAAACTTCATCAAAAGCATCTCGGACGAAGAGTTCTC 238
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 189 TGAAATCATGAGAGGGATCCCTCTAAACTTCATCAAAAGCATCTCGGAAGAAGAGTTATC 248
Query 239 -GCATAAAATGGTGTTGAAAGTGTCATGGGGAAGCTCATGGCCAATCAAAATTTGTAGAA 297
|| ||| ||| |||| ||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 249 GGC-TAAGATGTTGTTAAAAGTGTCATGGGGAAGTTCTTGGCCTATCAAAATTTGTAGAA 307
Query 298 ACCCAAGCTTCTACTTTATGGAGAAAAAAGGATGGGATCAGTTTTTGAGCGACAATGGTT 357
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 308 ACCCAAGCTTCTACTTTATGGAGAAAAAGGGATGGGATCAGTTTTTGAGCGACAATGGAT 367
Query 358 TAGGTAATAACGAGTTTCTTACCTTCACGCACCAAGGAAATATGTGCTTTAGTGTAGACA 417
|||||||| | ||||||||||||||||| |||||||||||||||||||||| || ||||
Sbjct 368 TAGGTAATGATGAGTTTCTTACCTTCACACACCAAGGAAATATGTGCTTTACCGTGGACA 427
Query 418 TCTATCAAATAGACGGTAAGGAGCTACTTACACCGCGCAGATCTGCAACCATTGCTTCTA 477
|||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 428 TCTACCAAATAGACGGTAAAGAGCTACTTACACCACGCAGATCTGCAACCATTGCTTCTA 487
Query 478 GTTCCGGTCGgaacaagagagaacaaaggaagaacatctacgaagatgtgaagaaggaag 537
||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||
Sbjct 488 GTTCCGGTCGGAACAAGAGAGAACAAAGGAATAACATCTACAAAGATGTGAAGGAGGAAG 547
Query 538 aagagatagagTCTTGGTCTGAATCGAGCTATCCTGGTCTCAAAGCAGCTGAATCCACAG 597
|||| |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||
Sbjct 548 AAGACATAGAGTCTTGGTCTGAATCGAGCTATCCTGGTCACAAAACAGCTGAATCTACAG 607
Query 598 GAAGAAGACAAA 609
||||||||||||
Sbjct 608 GAAGAAGACAAA 619
Score = 444 bits (240), Expect = 9e-124
Identities = 356/409 (87%), Gaps = 20/409 (5%)
Strand=Plus/Plus
Query 621 AAGAAGAAGAAGAAGAT-GACAA-T-GT-GTAACGATTCTGAAGACGACAATGTGTCTCT 676
|||||||||| |||| | || || | | || |||||||| |||| |||| | |||||||
Sbjct 667 AAGAAGAAGATGAAGGTGGA-AAGTATTAGTTACGATTCTCAAGATGACAGTTTGTCTCT 725
Query 677 TGTTCCAGAATTTACCCTCACCATAAAGAAATCATACCTCTTTTTCTTGGGGGTTCCGAA 736
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||
Sbjct 726 TGTTCCAGAATTTACCCTCACCATAAAGAAATCATACCTCATTTTCTTGGGGATTCCAAA 785
Query 737 GATGTTTGAGGAGTTGCATATGCCAAGGGAAGCAACAATGTTCAAGATTCATGATCCGGA 796
||||||||||||| |||||||||||| ||| ||||| ||||||||||| |||||||||||
Sbjct 786 GATGTTTGAGGAGCTGCATATGCCAACGGAGGCAACTATGTTCAAGATCCATGATCCGGA 845
Query 797 AGGAAAAAGGTCATGGGATGTTATGTATAAGCTC-GCTGGTACAC-A-ATCAAGATTCTG 853
||| ||||||||||||||||||||||||||| || | | || || | | ||||||||||
Sbjct 846 AGGGAAAAGGTCATGGGATGTTATGTATAAGTTCAG-TAATA-ACCAGA-CAAGATTCTG 902
Query 854 TGCTGGATGGATTCGTTTGGCTAAAGAACTAGGTCTAGTGATTGGAGATGTTTGCACGTT 913
|||||| ||||||||||||||||||||||| ||| | | ||| |||||||||||||| ||
Sbjct 903 TGCTGGTTGGATTCGTTTGGCTAAAGAACTTGGTTTGGAGATCGGAGATGTTTGCACTTT 962
Query 914 CACACTCATCAAACCCACCGAGATGCTTGTTAAAGTCTCCAAATAAGAGATGATGAAG-T 972
||| ||||||||||| |||||||||||||||| |||||| |||||||||||||||||| |
Sbjct 963 CACGCTCATCAAACCTACCGAGATGCTTGTTAGAGTCTCTAAATAAGAGATGATGAAGAT 1022
Query 973 -TG-T-TT-G----ATCACTCTCTCAAAATCTAGTTTATGTGTTAGGAA 1013
|| | || | || ||||||||||||||||||| ||||||||||||
Sbjct 1023 ATGATATTAGTTTGATAACTCTCTCAAAATCTAGTTAATGTGTTAGGAA 1071
Score = 58.4 bits (31), Expect = 1e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1014 GGTGTTATTAACTTGTTACATTTGTTGTTTCTCT 1047
||| ||||||||||||||||||||||||||||||
Sbjct 1087 GGTCTTATTAACTTGTTACATTTGTTGTTTCTCT 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52710572250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5