BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488676
Length=1079
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18110.1 | Symbols: NCBP | novel cap-binding protein | chr5:... 1522 0.0
> AT5G18110.1 | Symbols: NCBP | novel cap-binding protein | chr5:5988744-5990681
REVERSE LENGTH=1120
Length=1120
Score = 1522 bits (824), Expect = 0.0
Identities = 1019/1108 (92%), Gaps = 34/1108 (3%)
Strand=Plus/Plus
Query 1 ttcttctcttctcctctttcttcttcCTGATTAGATTTTTAGGGCTTTTG-AAGCACGAA 59
||||||||| |||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 8 TTCTTCTCTCCTCCTCTTTCTTCTTCCTGATTGGAATTTTAGGGCTTTTGAAAGCACGAA 67
Query 60 CGCGTTAAGCTCTAATCGAGaaaaaaaTGGAGGTTGCGGATAGGAGAGACGAGGAGATCA 119
||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 68 CGCGTGAAGCTCTAATCGAGAAAAAAATGGAGGTTTTGGATAGGAGAGACGATGAGATCA 127
Query 120 GGGACTCTGGAAACATGGACATCATCGAGTCGCACTATGTCACCGACTCTGTTTCCGAAG 179
||||||| ||||||||||||| |||| |||| |||||||| ||||||||||||||||| |
Sbjct 128 GGGACTCGGGAAACATGGACAGCATCAAGTCACACTATGTTACCGACTCTGTTTCCGAGG 187
Query 180 AACGTCGCTCTCGTGAGCTCAAGGATGGTCTCCATCCTCTACGGTACAAGTTTTCGATAT 239
|||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 188 AACGCCGCTCTCGTGAGCTCAAGGATGGAGACCATCCTTTACGGTACAAGTTTTCGATAT 247
Query 240 GGTACACTCGTCGCACACCAGGGGTTCGGAACCAATCTTATGAGGATAACATTAAGAAGA 299
|||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 248 GGTACACTCGTCGCACACCAGGGGTTCGGAACCAGTCTTATGAAGATAACATCAAGAAGA 307
Query 300 TGGTGGAATTCAGCACTGTTGAAGGGTTTTGGGCCTGCTACTGTCACCTTGCACGTTCTT 359
|||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 308 TGGTAGAATTCAGCACGGTTGAAGGATTTTGGGCCTGCTACTGTCACCTTGCTCGTTCTT 367
Query 360 CTCTCTTGCCTAGTCCAACAGATCTTCATTTCTTTAAGGATGGGATTCGTCCGTTGTGGG 419
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 368 CTCTCTTGCCTAGTCCAACAGATCTTCATTTCTTTAAGGATGGGATTCGTCCATTGTGGG 427
Query 420 AGGTA-GGCGCCAACTGCAATGGAGGAAAGTGGATCATACGTTTCTCAAAAGTTGTATCT 478
||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 AGG-ATGGTGCCAACTGCAATGGAGGAAAGTGGATCATACGTTTCTCAAAAGTTGTATCT 486
Query 479 GCTCGCTTCTGGGAGGATCTGCTTCTTGCATTGGTAGGCGACCAGCTTGACGACGCTGAT 538
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 487 GCTCGCTTCTGGGAGGATCTGCTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGAT 546
Query 539 AACATATGTGGGGCAGTACTGAGTGTCCGCTTCAATGAGGACATCATTAGTGTATGGAAT 598
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 547 AACATATGTGGGGCAGTACTGAGTGTCCGTTTCAACGAGGACATCATTAGTGTATGGAAT 606
Query 599 CGCAATGCTTCTGACCATCAGGCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 CGCAATGCTTCTGACCATCAGGCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTG 666
Query 659 AAGTTGCCCCATGCATATGTCATGGAATACAAGCCCCACGATGCTTCTCTCCGCGACAAC 718
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 667 AAGTTGCCTCATGCATATGTCATGGAATACAAGCCACACGATGCTTCTCTCCGCGACAAC 726
Query 719 TCTTCCTACAGAAACACATGGCTGAGAGGATAGGCTCAAAGTGGACGATTGCATCATGTA 778
||||||||||||||||||||||||||||||||||| |||||| || ||||| ||||||||
Sbjct 727 TCTTCCTACAGAAACACATGGCTGAGAGGATAGGCCCAAAGTCGATGATTGTATCATGTA 786
Query 779 ATGTGGAGAAGATTTGGGAAGCTCATCTGCAACCTGGGAAGATATCTGGATTGAACCCTG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 ATGTGGAGAAGATTTGGGAAGCTCATCTGCAACCTGGGAAGATATCTGGATTGAACCCTG 846
Query 839 TATCCAATACCATACTGTACCGAAGGCTTACAATACCAGaaaaaaaaaaCAAAATCCCGG 898
|||||||||||||||||||||| |||||||||||| ||||||||| |||||||| ||
Sbjct 847 TATCCAATACCATACTGTACCGGAGGCTTACAATATCAGAAAAAA----CAAAATCCGGG 902
Query 899 CAAATTCTGTGTCAGTATGTG--C-T--C-----------A---TACATCTTGCTACCTT 939
| | ||||||||||||||||| | | | | ||||||||| || |||
Sbjct 903 CTACTTCTGTGTCAGTATGTGTTCATTTCGTTTTTCTTTTACAGTACATCTTGTTAACTT 962
Query 940 CAATGGTTTGACTCTTGTTCAAAACT-TCA---T-T-TT--CAATGAAAACTGGAGATTA 991
||||||||||||||||| |||||||| | | | | || |||||||||||||| ||||
Sbjct 963 CAATGGTTTGACTCTTGATCAAAACTATAAGGATGTATTTTCAATGAAAACTGGAAATTA 1022
Query 992 CGTACTGGTTTACATTATGACTCGTGTCTTAAACAGTAACAGGATGTCAATATACAATTT 1051
||| |||||||||||||| |||| ||||||||| |||||||||||||||||||||||| |
Sbjct 1023 CGTTCTGGTTTACATTATAACTCATGTCTTAAAAAGTAACAGGATGTCAATATACAATGT 1082
Query 1052 CACTTCGTACTATGGTCTCTAATGTACA 1079
|||||||||| ||| |||||||||||||
Sbjct 1083 CACTTCGTACGATGATCTCTAATGTACA 1110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52861173885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5