BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488680
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18140.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1515 0.0
> AT5G18140.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr5:5998175-5999888 FORWARD LENGTH=1251
Length=1251
Score = 1515 bits (820), Expect = 0.0
Identities = 1088/1209 (90%), Gaps = 51/1209 (4%)
Strand=Plus/Plus
Query 1 ACCACTTAACGTCAGTGGTCCGTTTGACAGACAGACCTGTGACTGTGAGTGGAGAAGATA 60
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1 ACCACTTAACGTCAGTGGTCCGTTTGACAAACAGACCTGTGACTGTGAGTGAAGAAGATA 60
Query 61 ATGCAGACTCACCTTTTGGTGGGACCCATCCCACTCAAGGGTTGCCGTCGA-T-TC-TCA 117
|||||||||||||||||||||||||| ||||||||||| || | ||||||| | || ||
Sbjct 61 ATGCAGACTCACCTTTTGGTGGGACCTATCCCACTCAAAGGCTACCGTCGATTCTCTTCC 120
Query 118 TCCTCCTTCTCCGGCGATCTCCTCCCTCCATCTTCTAATCCTTTCGGCGGAGATCTACAA 177
||||||||||||||||||||||||||||| || ||||| ||| ||||| |||| |||
Sbjct 121 TCCTCCTTCTCCGGCGATCTCCTCCCTCCGTCGTCTAACCCTATCGGCCGAGACCTA-TT 179
Query 178 CACCACCACCGTCGAAGGCACCGCGACGGCAGATCCCGGAGTCACCGTAATCGCTCGAAA 237
| || ||||||||||||||||||||||||| ||| |||||| |||||||||||||||||
Sbjct 180 C-CC-TCACCGTCGAAGGCACCGCGACGGCAAATCTCGGAGTTACCGTAATCGCTCGAAA 237
Query 238 ACGACGGTTACTTCTGCGGCGTATTCTTCGTCGTCTTCTTCGGCTTCTAATACCGGTGGG 297
|||||| ||||| ||| ||| || | ||||| | |||||||||||| |||
Sbjct 238 ACGACGATTACTAGTGCTGCG-----TT--T--TCTTC--AAG-TTCTAATACCGGCGGG 285
Query 298 CAGAACCATTATGTTGTTTTGGGTGTCGCTCGCAACGCCACACAAGTTGACATCAAGAGA 357
||||| ||||| | ||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct 286 CAGAATCATTACGCTGTTTTGGGCATCGCTCGAAACGCCACACAAGGTGACATCAAGAGA 345
Query 358 GCTTATCGCCTGCTCGCTCGAAAGTTTCATCCTGATGTCAATAAGGACTCTAGAGCCGGA 417
|||||||| |||| ||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 346 GCTTATCGTTTGCTAGCTCGAAAGTTTCATCCTGATGTTAATAAGGACTCTAAAGCCGGA 405
Query 418 GAGCTATTCAAGAGTGTGCGTTGTTCCTACGAAGTACTATCTAATGAAGCTACAAGGACT 477
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 GAGCTATTCAAGAGTGTCCGTTGTTCCTACGAAGTACTATCTAATGAAGCTACAAGGACT 465
Query 478 CAGTACGACCGAGCACTTAAACTTCAAGAAAATTCCCGGTTCCATAGAGTGAAAAGGCAC 537
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 CAGTACGACAGAGCACTTAAACTTCAAGAAAATTCCCGGTTCCATAGAGTGAAAAGGCAC 525
Query 538 AACTACACCCCTGAGGTTGAAGATGCCATGAAGTATTACTACAGCTGGTCTGAGAAAAGA 597
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 526 AGCTACACCCCTGAGGTTGAAGATGCCATGAAGTATTACTACACCTGGTCTGAGAAAAGA 585
Query 598 CACAGAT-----C-C---AGA--C-----A-A-TATTCTACATATCCAAACTCACATTTC 639
|| |||| | | ||| | | | |||||||||||||||||||||||||||
Sbjct 586 CAAAGATCCAGACACGGGAGATTCTATGGACACTATTCTACATATCCAAACTCACATTTC 645
Query 640 TATGCTGAGACTGAGCCGCAAGAAGAAGAAGAAGTAGAAACAGCACAAGACCAGCGAGAC 699
|| |||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 646 TACGCTGAGACCGAGCCGCAAGAAGAAGAAGGAGTAGAAACAGCACCAGACCAGCGAGAC 705
Query 700 TCCTTTGTCAAAGCTCTCAGATCCGCCTTCTTATCGATGTTTCTTCTATATACATTCGGT 759
|| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 706 TCATTTGTTGAAGCTCTCAAATCCGCCTTCTTATCGATGTTTCTTCTATATACATTCGGT 765
Query 760 TGCCTAGCATCTCTCACATTTAGCACATTCACAGCTTTGCTTGACAAGGAACTCGACATG 819
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 766 TGCCTAGCATCTCTCACATTTAGCACATTCACAGCGTTGCTCGACAAGGAACTCGACATG 825
Query 820 GGTTACAAAGTCGGATTCATGATCGCTTGGATACTAGGCGGAAAAGGCGGCATCCTTCTC 879
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 826 GGTTACAAAGTCGGATTCATGATCGCTTGGATACTTGGCGGAAAAGGCGGTATCCTTCTT 885
Query 880 ACTCTCTGCCTAACATTTGCAAGCTGGCTCTGTGGGAAAGCAAGCAGCAGCGTGGTGGTT 939
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 ACTCTCTGCTTAACATTTGCAAGCTGGCTCTGTGGGAAAGCAAGCAGCAGCGTGGTGGTT 945
Query 940 CTTGTGGTAGTGGCAATGTGGGTTGGCTCGAATTTAGCTAGACATGCTCCTCTTCCACAA 999
|||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 946 CTTGTGTTAGTAGCAATGTGGGTTGGCTCTAATTTAGCTAGACATGCTCCTCTTCCACAA 1005
Query 1000 GGAGCTCTTCTCACCCTCCTCTACATGTCAATCAAGCTTCAAGTTGACTCAACCTGAATC 1059
|| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1006 GGTGCTCTTCTCACCCTCCTCTACATGTCAATCAAACTTCAAGTCGACTCAACCTGAATC 1065
Query 1060 TTCTTCTCTAAATTTCCACTACGTTT-AGGTTGTAAATAGCTA-GATTACATTGTTCTCT 1117
|||| | || |||||||||||||| || ||||||||||||| | ||||||| || | |
Sbjct 1066 TTCTG-T--AAGTTTCCACTACGTTTTAGATTGTAAATAGCTAAG-TTACATTATT-TGT 1120
Query 1118 ATTCTGTCCTATGATTTGGATCTTGGAGAAAA-TCGAAATAGTAGTAAAGAGAAGAAATT 1176
|| | | |||||||||| |||||||||||| | || |||||||||||||||||||||
Sbjct 1121 AT-C---C-TATGATTTGGGTCTTGGAGAAAAAT-GAT-TAGTAGTAAAGAGAAGAAATT 1173
Query 1177 GCTTGAAGG 1185
|||||||||
Sbjct 1174 GCTTGAAGG 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58182431655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5