BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488687
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18200.1 | Symbols: | UTP:galactose-1-phosphate uridylyltra... 1775 0.0
> AT5G18200.1 | Symbols: | UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate
adenylyltransferases | chr5:6015225-6016782
FORWARD LENGTH=1328
Length=1328
Score = 1775 bits (961), Expect = 0.0
Identities = 1174/1273 (92%), Gaps = 30/1273 (2%)
Strand=Plus/Plus
Query 1 GCACAAGTGTCGAAGCTACAGA--TCACAAAAG-A--AGCGAACGATGACGTCACCGAGT 55
|||||||||||| ||||||||| |||||||| | || ||| |||||||||||||||
Sbjct 1 GCACAAGTGTCGCAGCTACAGAGCACACAAAAGAAGGAGAGAAAGATGACGTCACCGAGC 60
Query 56 CATGCCCCTGATCGCGGCGGCAGCGACGGCGACTCGGTCGAGAATCAATCTCCGGAGCTC 115
|||||| |||||||||||||| ||||||| ||||| ||||||||||| || || ||||||
Sbjct 61 CATGCCTCTGATCGCGGCGGCGGCGACGGTGACTCAGTCGAGAATCAGTCCCCTGAGCTC 120
Query 116 AGGAAGGATCCGGTAACTAACCGCTGGGTCATATTCTCTCCCGCCCGAGCCAAGAGACCG 175
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 AGGAAAGATCCGGTAACTAACCGCTGGGTCATATTCTCTCCCGCCAGAGCCAAGAGACCG 180
Query 176 ACTGATTTCAAATCCAAATCTCCCCAGAACCCTAATCCTAAACCTTCCTCGTGCCCCTTT 235
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 181 ACTGATTTCAAATCCAAATCTCCCCAGAACCCTAATCCCAAACCTTCCTCATGCCCATTT 240
Query 236 TGCATCGGTCGTGAGCAAGAGTGTGCTCCGGAGATATTTCGTGTGCCAGATCATGACCCG 295
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 241 TGCATCGGTCGTGAGCAAGAGTGTGCCCCGGAGTTATTTCGTGTGCCAGATCATGACCCG 300
Query 296 AATTGGAAACTCCGGGTCATCGAGAATCTCTACCCGGCTCTAAGTAGGAATCTCGAGACC 355
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 301 AATTGGAAACTCCGGGTCATCGAGAATCTGTACCCGGCTCTTAGTAGGAATCTCGAGACC 360
Query 356 CAAGCGAAGCAAGGC-GAGACGGGTACGGGTCGGACTATAGTCGGATTCGGATTCCACGA 414
||| ||| ||| | |||||||| || ||||||| |||||||||||||||||||||||
Sbjct 361 CAATCGACCCAA-CCTGAGACGGGAACAAGTCGGACAATAGTCGGATTCGGATTCCACGA 419
Query 415 CGTGGTGATCGAATCCCCTGTTCATTCGATTCAGCTCTCCGATATCGATCCGGTGGGTAT 474
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGTAGTGATCGAATCCCCTGTTCATTCGATTCAGCTCTCCGATATCGATCCGGTGGGTAT 479
Query 475 CGGCGATGTCTTGATCGCGTATAAGAAGAGGATCGATCAGATTGCGCAACATGATTCCAT 534
||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 480 CGGCGATATCTTGATCGCTTATAAGAAGAGGATCAATCAGATTGCGCAACATGATTCCAT 539
Query 535 CAATTACATTCAGGTTTTCAAGAACCAGGGTGCGTCGGCTGGAGCATCAATGAGTCACTC 594
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 CAATTACATCCAGGTTTTCAAGAACCAAGGTGCGTCGGCTGGAGCATCAATGAGTCACTC 599
Query 595 CCACAGTCAGATAATGGCTCTTCCAGTTGTTCCTCCAACAGTTTCTTCACGCCTTGATGG 654
||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 600 CCACAGTCAAATGATGGCTCTACCAGTTGTTCCTCCAACGGTTTCTTCACGCCTTGATGG 659
Query 655 TACTAAAGATTATTTCGACGAGACTGGGAAATGTTGTCTTTGTGAAGCTAAATCAAAACA 714
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 660 TACTAAAGATTATTTCGAGGAGACTGGGAAATGTTGTCTCTGTGAAGCTAAATCAAAACA 719
Query 715 TTTTGTGATCGATGAGTCGTCCCATTTTGTTTCCGTTGCCCCTTTCGCTGCTACATATCC 774
||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| |||||
Sbjct 720 TTTTGTGATCGATGAGTCGTCTCATTTTGTTTCTGTTGCTCCTTTTGCTGCTACGTATCC 779
Query 775 CTTTGAGATTTGGATTATTCCCAAGGATCATTCTTCCCATTTCCATCATCTCGATGACGT 834
||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 780 CTTTGAGATTTGGATTATTCCGAAAGATCATTCTTCCCACTTCCATCATCTCGATGACGT 839
Query 835 CAAGGCTGTTGACCTTGGAGGACTTCTGAAACTCATGCTTCAAAAGATAGCAAAGCAACT 894
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 840 TAAGGCTGTTGACCTTGGAGGACTTCTGAAACTCATGCTTCAGAAGATAGCAAAGCAACT 899
Query 895 TAACGATCCCCCGTATAATTATATGATCCATACTTCTCCCCTCAAGGTCACAGAATCACA 954
||||||||| |||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 900 TAACGATCCACCGTATAACTATATGATCCATACTTCTCCACTCAAGGTTACAGAATCACA 959
Query 955 ACTACCTTATACGCACTGGTTCTTACAGATTGTACCGCAGCTCTCTGGGGTAGGCGGGTT 1014
| |||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 960 ATTACCTTATACGCACTGGTTCTTACAGATTGTACCTCAGCTTTCTGGGGTAGGTGGGTT 1019
Query 1015 TGAGATTGGCACAGGTTGTTACATAAACCCAGTTTTCCCAGAGGATGTGGCAAAGGTTAT 1074
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1020 TGAGATTGGCACAGGTTGTTACATAAACCCTGTTTTCCCAGAGGATGTAGCAAAGGTTAT 1079
Query 1075 GCGGGAAGTTAGCCTTACTTGAACCCGGGTTTTTAGTGTCAA---A---TTC-G-TGT-- 1124
|||||||||||||||||||||||||||| |||||||| |||| | ||| | ||
Sbjct 1080 GCGGGAAGTTAGCCTTACTTGAACCCGGTTTTTTAGTCTCAACCTAAAGTTCAGCTGGAA 1139
Query 1125 -TGA---GT-T-G--TT---GGCCTAATGTGCAGGTCTCTAGAAAACACTATTCACT-GT 1172
||| || | | || ||||||||||||| ||||||| ||||||||||||| | ||
Sbjct 1140 GTGATTAGTGTTGAGTTATTGGCCTAATGTGCAAGTCTCTAAAAAACACTATTCAATTGT 1199
Query 1173 CTTTTTTCTCCTCTGTTGAAGAGGAGGATGTTTCAGCTTGATTCAAATAACACTGTTGTA 1232
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1200 CTTTTT-CTCCTCTGTTGAAGAGGAAGATGTTTCAGCTTGATTCAAATAACACTGATGTA 1258
Query 1233 AACAATGCATGTA 1245
|||||||||||||
Sbjct 1259 AACAATGCATGTA 1271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61194464355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5