BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488691
Length=2971
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18230.2 | Symbols: | transcription regulator NOT2/NOT3/NOT... 4235 0.0
AT5G28262.1 | Symbols: | other RNA | chr5:10238550-10239773 FO... 174 4e-42
> AT5G18230.2 | Symbols: | transcription regulator NOT2/NOT3/NOT5
family protein | chr5:6021444-6027249 REVERSE LENGTH=2922
Length=2922
Score = 4235 bits (2293), Expect = 0.0
Identities = 2546/2665 (96%), Gaps = 29/2665 (1%)
Strand=Plus/Plus
Query 297 GATGGGTGCGAGCCGGAAATTACAAGGCGAGATAGATCGGGTGCTGAAGAAGGTTCAAGA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 GATGGGTGCGAGCCGGAAATTACAAGGCGAGATAGATCGGGTGCTGAAGAAGGTTCAAGA 277
Query 357 AGGTGTTGATGTTTTCGACAGCATCTGGAACAA---G---GTATATGATACAGACAATGT 410
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 278 AGGTGTTGATGTTTTCGACAGCATCTGGAACAAGTGGAATGTATATGATACAGACAATGT 337
Query 411 TAACCAAAAGGAAAAGTTCGAGGCGGACTTGAAGAAGGAAATCAAGAAGCTGCAGCGGTA 470
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 338 TAATCAAAAGGAAAAGTTTGAGGCGGACTTGAAGAAGGAAATCAAGAAGCTGCAGCGGTA 397
Query 471 TAGAGACCAGATCAAGACTTGGATTCAGTCCAGTGAGATCAAAGATAAGAAAGTCAGTGC 530
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 398 TAGAGACCAGATCAAGACATGGATTCAGTCTAGTGAGATCAAAGATAAGAAAGTCAGTGC 457
Query 531 ATCATATGAGCAATCCCTGGTTGACGCTCGGAAGCTTATTGAGAAAGAGATGGAGAGGTT 590
||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 458 ATCTTATGAGCAATCCCTGGTGGATGCTCGGAAGCTTATTGAGAAAGAGATGGAGAGGTT 517
Query 591 TAAGATCTGTGAGAAAGAGACCAAGACAAAAGCTTTTTCCAAGGAAGGACTGGGTCAGCA 650
|||||| ||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 518 TAAGATATGTGAAAAAGAGACCAAGACAAAAGCCTTCTCCAAGGAAGGACTGGGTCAGCA 577
Query 651 ACCTAAAACTGACCCAAAAGAGAAAGCAAAGTCAGAGACAAGGGATTGGTTAAACAATGT 710
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 578 ACCTAAAACTGACCCAAAAGAGAAAGCAAAGTCAGAGACAAGGGATTGGTTGAACAATGT 637
Query 711 GGTGAGTGAACTGGAGTCACAGATTGATAGCTTTGAAGCTGAATTGGAAGGACTGTCTGT 770
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 638 GGTGAGTGAACTGGAGTCGCAGATTGATAGCTTTGAAGCTGAGTTGGAAGGACTGTCTGT 697
Query 771 CAAAAAAGGAAAGACAAGACCGCCCAGATTGACTCATCTTGAGACATCTATCACAAGGCA 830
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 698 CAAAAAAGGAAAGACAAGACCGCCCAGATTGACTCATCTTGAGACATCTATTACAAGACA 757
Query 831 CAAGGATCACATAATAAAGCTGGAACTGATCTTGAGGCTTCTGGACAATGATGAATTAAG 890
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 758 CAAGGATCACATAATAAAGTTGGAACTGATCTTGAGGCTTCTGGACAATGATGAATTAAG 817
Query 891 TCCAGAACAAGTAAATGACGTCAAAGATTTTCTGGATGATTATGTTGAACGAAATCAGGA 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 TCCAGAACAAGTAAATGACGTCAAAGATTTTCTGGATGATTATGTTGAACGAAATCAGGA 877
Query 951 TGATTTTGACGAATTCAGTGATGTCGATGAGCTCTATAGCACGTTGCCACTAGATGAGGT 1010
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 TGATTTTGATGAATTCAGTGATGTCGATGAGCTCTATAGCACGTTGCCACTAGATGAGGT 937
Query 1011 GGAGGGTCTTGAAGATCTAGTTACTGCTGGCCCTCTTGTCAAGGGTACTCCTTTGAGCAT 1070
|||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 938 GGAGGGTCTTGAAGATCTAGTTACCGCTGGCCCACTTGTCAAGGGTACTCCTTTAAGCAT 997
Query 1071 GAAGAGTTCTTTGGCAGCGTCAGCATCTCAAGTTCGGAGCATAAGTTTGCCAACTCATCA 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 998 GAAGAGTTCTTTGGCAGCGTCAGCATCTCAAGTTCGGAGCATAAGTTTGCCAACTCA-C- 1055
Query 1131 TCAGAGTACTTCGCAAGAGAAAACAGAGGATCCATCTTTACCGGATAGCAGTGCTGAGAT 1190
| | | |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1056 -C-----A--T--CAAGAGAAAACAGAGGATACATCTTTACCGGATAGCAGTGCTGAGAT 1105
Query 1191 GGTTCCAAAAACCCCTCCCCCAAAGAATGGCGCAGGCCTTCACTCAGCACCATCAACACC 1250
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1106 GGTTCCAAAAACCCCTCCGCCAAAGAATGGTGCAGGCCTTCACTCAGCACCATCAACACC 1165
Query 1251 TGCCGGGGGACGTCCAAGTTTGAATGTGCCTGCCAGTAATATTTCAAATGCATCAGTTGC 1310
|||||| ||||||||||||||||| ||||||||| ||||| |||||||| |||||||| |
Sbjct 1166 TGCCGGAGGACGTCCAAGTTTGAACGTGCCTGCCGGTAATGTTTCAAATACATCAGTTAC 1225
Query 1311 CTTATCAACTTCTATTCCTACTCAAACTTCCATAGAAAGCATGGGGAGTTTGTCTCCCGT 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 CTTATCAACTTCTATTCCTACTCAAACTTCCATAGAAAGCATGGGGAGTTTGTCTCCCGT 1285
Query 1371 GACTGCCAAGGAAGAAGACGCAACAACATTGCCTTCTCGTAAACCACCCTCATCTGTTGC 1430
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1286 GGCTGCCAAGGAAGAAGACGCAACAACCTTGCCTTCTCGTAAACCACCCTCATCTGTTGC 1345
Query 1431 TGATACTCCATTGAGGGGCATTGGTAGAGTTAGTATCCCCAACCAGCCCCAACCAAGCCA 1490
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1346 GGATACTCCATTGAGGGGCATTGGTAGAGTTGGTATCCCCAACCAACCCCAACCAAGCCA 1405
Query 1491 GCCTCCGTCTCCAATTCCAGCTAATGGATCTCGCATTAGTGCAACTTCAGCAGCTGAAGT 1550
|||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 1406 GCCTCCGTCTCCTATTCCAGCTAACGGGTCTCGCATTAGTGCAACTTCAGCTGCTGAAGT 1465
Query 1551 TGCAAAGAGAAATATAATGGGAGTTGAGAGCAATGTCCAACCTCTAACTTCTCCACTGAG 1610
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1466 TGCAAAGAGAAATATAATGGGAGTTGAGAGCAACGTCCAACCTCTTACTTCTCCACTGAG 1525
Query 1611 CAAAATGGTATTGCCACCAACTGCAAAGGGTAATGATGGAACTGCCTCTGATAGTAACCC 1670
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1526 CAAAATGGTGTTGCCACCAACTGCAAAGGGTAATGATGGAACTGCCTCTGATAGCAACCC 1585
Query 1671 TGGTGATGTTGCGGCTAGTATCGGTAGAGCTTTTTCACCATCTATTGTATCTGGTTCGCA 1730
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1586 TGGTGATGTTGCGGCTAGTATTGGTAGAGCTTTTTCACCATCTATTGTATCTGGTTCGCA 1645
Query 1731 GTGGAGGCCTGGTAGTCCCTTTCAGAGTCAGAATGAAACGGTTCGTGGGAGAACTGAAAT 1790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1646 GTGGAGGCCTGGTAGTCCCTTTCAGAGTCAGAATGAAACGGTTCGTGGGAGAACTGAAAT 1705
Query 1791 AGCACCAGATCAAAGAGAGAAATTTTTACAGAGGTTACAGCAAGTACAGCAAGGCCATGG 1850
||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1706 AGCACCAGACCAAAGAGAGAAATTCTTACAGAGATTACAGCAAGTACAGCAAGGCCATGG 1765
Query 1851 TAACCTCTTAGGCATGCCTTCTCTATCTGGAGGAAATGAGAAGCAGTTTTCTTCACAACA 1910
||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1766 TAACCTCTTAGGCATACCTTCTTTATCTGGAGGAAACGAGAAGCAGTTTTCTTCACAACA 1825
Query 1911 GCAAAATCCTCTATTACAGCAGAGCTCTGCCATTTCTCCTCATGGAAGCTTGGGAATCGG 1970
|||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1826 GCAAAATCCTCTTTTACAGCAGAGCTCTTCCATCTCTCCTCATGGAAGCTTGGGAATCGG 1885
Query 1971 AGTTCAGGCACCAGGTTTTAATGTCATGAATTCTGCCTCCTTACAGCAGCAGTCAAATGC 2030
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1886 AGTTCAGGCACCAGGTTTTAATGTCATGAGTTCTGCCTCCTTACAGCAGCAATCAAATGC 1945
Query 2031 CATGAGTCAACAATTGGGTCAGCAGCCTTCTGTTGCAGATGTAGACCATGTCAGAAATGA 2090
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1946 CATGAGTCAACAATTGGGTCAGCAACCTTCTGTTGCAGATGTAGACCATGTCAGAAATGA 2005
Query 2091 TGATCAA-CCACAGCAAAACTTACCTGATGATTCAGCTTCCATAACAGCTTCAAAAACTA 2149
||||||| || ||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 2006 TGATCAATCC-CAGCAAAACTTACCTGATGATTCAGCTTCCATAGCAGCTTCAAAAGCTA 2064
Query 2150 TTCAAAATGAGGATGATTCTAAAGTTCTATTTGATACTCCGTCCGGAATGCCCAGCTACA 2209
|||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2065 TTCAAAGTGAGGATGACTCTAAAGTTCTATTTGATACTCCGTCGGGAATGCCCAGCTACA 2124
Query 2210 TGTTGGATACAGTACAGGTATCTAGCGGTCCTGATTTCTCTCCTGGACAACCCATACAAC 2269
|||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2125 TGTTGGATCCAGTACAAGTATCTAGCGGTCCTGATTTCTCTCCTGGACAACCTATACAAC 2184
Query 2270 CAGGTCAATCTTCAAGTAGCCTTGGGGTCATTGGCCGGAGAAGTAACTCTGAATTAGGAG 2329
| |||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 2185 CGGGTCAATCTTCAAGTAGCCTCGGGGTCATTGGACGGAGAAGTAACTCTGAGTTAGGAG 2244
Query 2330 CCATTGGTGACCATTCAGCTGTAGGGCCAATGCATGATCAAATGCACAATCTCCAGATGC 2389
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2245 CCATTGGTGACCCTTCAGCTGTAGGGCCAATGCATGATCAAATGCACAATCTCCAGATGC 2304
Query 2390 TTGAAGCTGCTTTCTACAAACGTCCTCAACCCTCAGATTCAGAACGTCCTAGACCCTATT 2449
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2305 TTGAAGCTGCTTTTTACAAACGTCCTCAACCCTCAGATTCAGAACGTCCTAGACCCTATT 2364
Query 2450 CTCCGAGGAACCCAGCAATCACACCACAAACATTTCCCCAAACACAAGCACCAATCATAA 2509
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2365 CTCCGAGGAACCCAGCAATCACACCTCAAACATTTCCCCAAACACAAGCACCAATCATAA 2424
Query 2510 ACAATCCTTTGCTCTGGGAACGTTTAGGCAGCGACGCTTATGGGACGGATACTTTGTTCT 2569
|||| ||||||||||||||||| ||||||||||| |||||||| || |||||||||||||
Sbjct 2425 ACAACCCTTTGCTCTGGGAACGGTTAGGCAGCGATGCTTATGGAACCGATACTTTGTTCT 2484
Query 2570 TTGCGTTCTATTATCAGCAGAACTCATACCAGCAATATCTAGCGGCAAAAGAGCTGAAGA 2629
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2485 TTGCGTTCTACTATCAGCAGAACTCATACCAGCAATATCTTGCTGCAAAAGAGCTGAAGA 2544
Query 2630 AACAGTCATGGAGATACCACAGAAAGTTCAACACTTGGTTTCAGAGACATAAAGAGCCAA 2689
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2545 AACAGTCATGGAGATACCACAGGAAGTTCAACACTTGGTTTCAGAGACATAAAGAGCCAA 2604
Query 2690 AGATTGCAACCGATGAATATGAACAAGGAGCCTATGTTTACTTTGATTTCCAAACCCCCA 2749
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 2605 AGATTGCAACCGATGAATATGAACAAGGAGCCTACGTTTACTTCGATTTCCAAACCCCGA 2664
Query 2750 AAGACGAGAATCAAGAAGGAGGATGGTGTCAGAGGATCAAAAATGAGTTCACATTTGAAT 2809
|||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 2665 AAGACGAGAATCAAGAAGGAGGATGGTGCCAAAGGATCAAAAACGAGTTCACATTTGAAT 2724
Query 2810 ACAGTTATCTAGAAGATGAACTCGTCGTATAGAATAGAGAGAGATATACATGTTTGTATA 2869
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2725 ACAGTTATCTTGAAGATGAACTCGTCGTATAGAATAGAGAGAGATG--CATGTTTGTATA 2782
Query 2870 TACTCTTGAGCAAGTGT-T-ATT-T--CCTGCGTCTATTTTGTACTCTTCTTTTCAATAA 2924
|||||| |||||||||| | ||| | |||||| |||||| |||||||||||||||||||
Sbjct 2783 TACTCTCGAGCAAGTGTGTTATTATTTCCTGCGACTATTT-GTACTCTTCTTTTCAATAA 2841
Query 2925 ACTAATTACTTTTAGTTTCAAACAA 2949
||||||||||||||||||||| |||
Sbjct 2842 ACTAATTACTTTTAGTTTCAA-CAA 2865
Score = 429 bits (232), Expect = 7e-119
Identities = 282/304 (93%), Gaps = 12/304 (4%)
Strand=Plus/Plus
Query 1 ATCCATAAAAGATCCAATCAAAATTCATTCATCCATCCATCATCGTTAGTTACATACA-C 59
||||| ||||||||||||||||||||||||| | ||||||||||||||||| ||| |
Sbjct 20 ATCCACAAAAGATCCAATCAAAATTCATTCA--C--CCATCATCGTTAGTTAC--ACATC 73
Query 60 ATCATCTCCTTCCTCTCGCTCCCTTCTGATAGCGAAACCCTAAAATACTATCAGCTGCTA 119
||| ||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 74 ATCGTCTTCTTCCTCTCGCTCCC-TCTGATAGCGAAACCCTAAAATACTCTCAGCTGCTA 132
Query 120 CTTTCCGAAACCAAATTCCGACGAATTAA--CtttttttttgttttttGGATAAAATCAT 177
||||||| |||||||| |||||||||||| |||||||||| || ||||||||||||
Sbjct 133 CTTTCCGTAACCAAATCCCGACGAATTAACCCTTTTTTTTT-TTGGGGGGATAAAATCAT 191
Query 178 CGGAGTCTCTTCTCTGGTTCGGCTGTGATGGGTGCGAGCCGGAAATTACAAGGCGAGATA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 CGGAGTCTCTTCTCTGGTTCGGCTGTGATGGGTGCGAGCCGGAAATTACAAGGCGAGATA 251
Query 238 GATCGGGTGCTGAAGAAGGTTCAAGAAGGTGTTGATGTTTTCGACAGCATCTGGAACAAG 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 GATCGGGTGCTGAAGAAGGTTCAAGAAGGTGTTGATGTTTTCGACAGCATCTGGAACAAG 311
Query 298 ATGG 301
|||
Sbjct 312 -TGG 314
> AT5G28262.1 | Symbols: | other RNA | chr5:10238550-10239773
FORWARD LENGTH=1006
Length=1006
Score = 174 bits (94), Expect = 4e-42
Identities = 122/135 (90%), Gaps = 3/135 (2%)
Strand=Plus/Plus
Query 391 GTATATGATACAGACAATGTTAAC-CAAAAGGAAAAGTTCGAGGCGGACTTGAAGAAGGA 449
|||||||||||||||||| ||||| ||||| ||| ||| |||||||||| ||||| ||
Sbjct 668 GTATATGATACAGACAATTTTAACAAAAAAGTAAACGTTTGAGGCGGACTCAAAGAAAGA 727
Query 450 AATCAAGAAGCTGCAGCGGTATAGAGA-C-CAGATCAAGACTTGGATTCAGTCCAGTGAG 507
|||||||||| |||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 728 AATCAAGAAGTTGCAGCGGTATAGAGACCTCAGATCAAGACATGGATTCAGTCCAGTGAG 787
Query 508 ATCAAAGATAAGAAA 522
|||||||||||||||
Sbjct 788 ATCAAAGATAAGAAA 802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 147691480192
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5