BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488696
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18240.1 | Symbols: MYR1, ATMYR1 | myb-related protein 1 | c... 2462 0.0
AT3G04030.3 | Symbols: | Homeodomain-like superfamily protein ... 994 0.0
AT5G18245.1 | Symbols: | other RNA | chr5:6028285-6033231 FORW... 745 0.0
> AT5G18240.1 | Symbols: MYR1, ATMYR1 | myb-related protein 1 |
chr5:6028285-6030802 REVERSE LENGTH=1688
Length=1688
Score = 2462 bits (1333), Expect = 0.0
Identities = 1527/1615 (95%), Gaps = 36/1615 (2%)
Strand=Plus/Plus
Query 1 GAGAAAAAGAGCATAAATAAGGAAAGCAGCAAAGACATCTTCCCAAGTTGGTGGAGTTGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 GAGAAAAAGAGCATAAATAAGGAAAGCAGCAAAGACATCTTCCCAAGTTGGTGGAGTTGC 75
Query 61 TAACCATAGTGTATCTCTGAACTGAGGGCAGCAGGTTGCAATTAAAAACTAAAGATT-T- 118
||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
Sbjct 76 AAACCATAGTGTATCTCTGAACTGAGAGTAGCAGGTTGCAATTAAAAACTAAAGATTGTG 135
Query 119 T--GTCAGACTTATGTATTACCAAAACCAGCACCAAGGAAAGAGCATCCTCTCTTCATCG 176
| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 136 TCAGACAGACTTATGTATTACCACAACCAGCACCAAGGAAAGAGCATCCTCTCTTCATCG 195
Query 177 AGAATGCCCA-TTCATTCTGAAAGGAATCCGTTCCTCAGGGGAAATGGCACAGGAGATTC 235
|||||||||| ||| |||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 196 AGAATGCCCATTTC-TTCTGAAAGGCATCCGTTCCTCAGAGGAAATGGCACAGGAGATTC 254
Query 236 TGGACTCATCCTCTCAACTGATGCAAAGCCAAGACTAAAATGGACTCCAGATCTTCACGA 295
||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 255 TGGACTCATTCTCTCCACTGATGCAAAGCCACGACTAAAATGGACTCCAGATCTTCACGA 314
Query 296 GAGATTTGTTGAAGCGGTCAATCAGCTTGGAGGAGGAGATAAGGCTACTCCTAAGACAAT 355
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 315 GAGATTTGTTGAAGCGGTCAACCAGCTTGGAGGAGGAGATAAGGCTACTCCTAAGACAAT 374
Query 356 CATGAAAGTCATGGGTATTCCAGGCCTTACCTTATACCATCTCAAGAGTCATCTTCAGAA 415
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 CATGAAAGTCATGGGCATTCCAGGCCTTACCTTATACCATCTCAAGAGTCATCTTCAGAA 434
Query 416 ATATAGGCTAAGCAAGAATCTTAATGGACAAGCTAACAGCAGTTTAAACAAGACAAGTGT 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 ATATAGGCTAAGCAAGAATCTTAATGGACAAGCTAACAGCAGTTTAAACAAGACAAGTGT 494
Query 476 GATGACCATGGTAGAAGAAAACCCTCCTGAAGTAGACGAAAGTCACAGTGAGAGTTTAAG 535
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 495 GATGACCATGGTAGAAGAAAACCCCCCTGAAGTAGACGAAAGTCACAGTGAGAGTTTAAG 554
Query 536 CATTGGACCACAGCCGACCATGAACTTGCCCATAAGTGATGCCCTTCAAATGCAAATAGA 595
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 555 CATTGGACCACAGCCGAGCATGAACTTACCCATAAGTGATGCCCTTCAAATGCAAATAGA 614
Query 596 GGTTCAGAGAAGGCTACACGAGCAACTTGAGGTACAGCGACATTTGCAGCTCAGGATAGA 655
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 GGTCCAGAGACGGCTACACGAGCAACTTGAGGTACAGCGACATTTGCAGCTCAGGATAGA 674
Query 656 GGCTCAAGGAAAGTACTTGCAATCGATTCTGGAGAAAGCACAAGAGACTCTTGGAAGACA 715
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 GGCTCAAGGAAAGTACCTGCAATCGATTCTGGAGAAAGCACAAGAGACTCTTGGAAGACA 734
Query 716 GAACCTAGGTGCAGCTGGGATTGAAGCAACAAAAGCTCAACTCTCAGAATTAGTATCTAA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 GAACCTAGGTGCAGCTGGGATTGAAGCAACAAAAGCTCAACTCTCAGAATTAGTATCTAA 794
Query 776 AGTATCAGCAGAATATCCAGACTCTAGTTTCCTAGAACCGAAAGAACTCCAGAATCTACG 835
|||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 795 AGTATCAGCAGACTATCCAGACTCTAGTTTCCTCGAACCGAAAGAACTGCAGAATCTACA 854
Query 836 CCATCAACAGATGCAAACAGCCTATCCACCTAACTCCTCCCTGGACAGTTGCCTAACCTC 895
||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 855 CCATCAACAGATGCAAAAAACGTATCCACCTAACTCCTCCCTGGACAGTTGCCTAACCTC 914
Query 896 AAGTGAAGGAAAC-CAGAAAGCCCCAAAGATGCTTGACAACAGACTGGGATTAAGAACAT 954
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 AAGTGAAGGAA-CTCAGAAAGCCCCAAAGATGCTTGACAACAGACTGGGATTAAGAACAT 973
Query 955 ATATCGGAGATTCAACTTCAGAGCAGAAAGAGATAATGGAAGAACCATTCTTCCATCGAA 1014
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 974 ATATTGGAGATTCAACTTCAGAGCAGAAAGAGATAATGGAAGAGCCATTCTTCCATAGAA 1033
Query 1015 TGGAGCTCACATGGGCAGAAGAAGAAAGCCTCAGAGAGAGTAACAATAGGCCATATCTTT 1074
||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||
Sbjct 1034 TGGAGCTCACATGGGCAGAAGAAGAAAGCCTCAGAGAGAATCACAACAGGCCATATCTTT 1093
Query 1075 CGACAATGGCTAACAACACAGAACCGAGAATCTCGTCATCAAGAAGAAGCCCTGGAAGAT 1134
| ||||||| ||||||| ||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1094 CAACAATGGTTAACAACGCAGAACCGAGAATCTCGTCTTCAAGAAGAAGTCCTGGAAGAT 1153
Query 1135 TGTCAATAGGAGTGGGATTACATGAACACAGAGGAGGGAGTAGCAACAACAGTGAGTATA 1194
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1154 TGTCAATAGGAGTGGGATTACATGAACACAGAGGAAGGAGTAGCAACAACAGTGAGTATA 1213
Query 1195 CAGAAGAAAGATTCAACGAGAATGGTGAAGATTGCAAGCTTGAAACACACACAAGAACAG 1254
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1214 CAGAAGAAAGATTCAACGAGAATAATGAAGATTGCAAGCTTGAAACACACACAAGAACAG 1273
Query 1255 CTCTAGATCTTAACACACACGACGAAAACTATGGCACAACGCGTCCGAAACAGTTTGATT 1314
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1274 CTCTAGATCTTAACACACACGACGAAAACTATGGCACAACGCGTCCTAAACAGTTTGATT 1333
Query 1315 TGAATGGTTTCAGCTGGAATTGAGAAGAACATAGAAGCTT-A-AAGACTGCAACAACCTT 1372
| ||||||||||||||||||||||||||||| | |||||| | |||| ||||||||||||
Sbjct 1334 TAAATGGTTTCAGCTGGAATTGAGAAGAACAAATAAGCTTTAGAAGAGTGCAACAACCTT 1393
Query 1373 TTTATGATAATCACACAGGAAATGAAAAGCCTTTGATTTCCTTTGTTAGATTGAGAGATT 1432
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1394 TTTATGATAATCACACAGGAAATGAAAAGCCTTTGATTTCCTTTGTTAGCTTGAGGGATT 1453
Query 1433 CGTCTAAAA--------------C-AA---AA--GAGACAATCTTGTGCAAAAATGTGTA 1472
||||||||| | || || |||||| |||||||||| ||||| |
Sbjct 1454 CGTCTAAAAATTGAATTATTAGTCGAACTCAAAAGAGACA-TCTTGTGCAACAATGTACA 1512
Query 1473 ACACCATTAATTTGCGTAGTTATGATCTCatatatatatatataCAGATAAATTTACTAA 1532
|||| |||||||||||||||||||||||||| ||||| | |||||||||||||||||||
Sbjct 1513 ACACTATTAATTTGCGTAGTTATGATCTCATC-ATATA-A-ATACAGATAAATTTACTAA 1569
Query 1533 CTTCATGGAAGATA-TCGAAATTCTTGAGAGAAGGACGTAAAGTTCCGTGCTTTT 1586
|||||||||||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct 1570 CTTCATGGAAGATACT-GAAATTCTTGAGAGAAGGACGTAAAGCTCCGTGCTTTT 1623
> AT3G04030.3 | Symbols: | Homeodomain-like superfamily protein
| chr3:1042882-1044697 REVERSE LENGTH=1346
Length=1346
Score = 994 bits (538), Expect = 0.0
Identities = 1019/1242 (82%), Gaps = 69/1242 (6%)
Strand=Plus/Plus
Query 122 CAGAC-TTATGTATTACCAAAACCAGCACCAAGGAAAGAGCATCCTCTCTTCATCGAGAA 180
||||| ||||||||||||||||||||||||||||||||| ||||||||| || || ||||
Sbjct 116 CAGACTTTATGTATTACCAAAACCAGCACCAAGGAAAGAACATCCTCTCATCTTCAAGAA 175
Query 181 TGCCCAT-TCA-TTCTGAAAGGAATCCGTTCCTCAG-GGGAAAT-GGCACAGGAGATTCT 236
|| ||| | | |||||||||| |||| ||||| || ||| ||| | | |||| ||||||
Sbjct 176 TG--CATATAACTTCTGAAAGGCATCCATTCCTTAGAGGG-AATAGTC-CAGGTGATTCT 231
Query 237 GGACTCATCCTCTCAACTGATGCAAAGCCAAGACTAAAATGGACTCCAGATCTTCACGAG 296
||||| ||||| ||||| |||||||||||| | ||||||||||||||||||||||| |||
Sbjct 232 GGACTTATCCTATCAACCGATGCAAAGCCACGCCTAAAATGGACTCCAGATCTTCATGAG 291
Query 297 AGATTTGTTGAAGCGGTCAATCAGCTTGGAGGAGGAGATAAGGCTACTCCTAAGACAATC 356
||||| ||||||| |||||||| || || |||| |||||| ||||||||||||||||||
Sbjct 292 AGATTCATTGAAGCAGTCAATCAACTCGGTGGAGCAGATAAAGCTACTCCTAAGACAATC 351
Query 357 ATGAAAGTCATGGGTATTCCAGGCCTTACCTTATACCATCTCAAGAGTCATCTTCAGAAA 416
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 352 ATGAAAGTCATGGGGATTCCAGGCCTTACCTTATACCATCTCAAAAGTCATCTTCAGAAA 411
Query 417 TATAGGCTAAGCAAGAATCTTAATGGACAAGCTAACAGCAGTTTAAACAAGACAAGTGTG 476
|| ||||| ||||||||||| || ||||||||||||| ||| || ||||| | | || |
Sbjct 412 TACAGGCTGAGCAAGAATCTCAACGGACAAGCTAACAACAGCTTCAACAAAATAGGTATA 471
Query 477 ATGACCATGGTAGAAGAAAACCCTCCTGAAGTAGACGAAAGTCACAGTGAGAGTTTAAGC 536
||||||||| | |||||||| ||||||| | |||||||| ||| || |||| |||||||
Sbjct 472 ATGACCATGATGGAAGAAAAGACTCCTGATGCAGACGAAATTCAAAGCGAGAATTTAAGC 531
Query 537 ATTGGACCACAGCCGACCATGAACTTGC-CC-ATAAGTGATGCCCTTCAAATGCAAATAG 594
|||||||||||||| | || ||| || | || ||| |||| || || |||||||||||||
Sbjct 532 ATTGGACCACAGCCAAACAAGAA-TT-CACCAATAGGTGAAGCACTGCAAATGCAAATAG 589
Query 595 AGGTTCAGAGAAGGCTACACGAGCAACTTGAGGTACAGCGACATTTGCAGCTCAGGATAG 654
|||| || |||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 590 AGGTCCAAAGAAGGCTTCATGAGCAACTTGAGGTACAGCGACATTTGCAGCTTAGGATAG 649
Query 655 AGGCTCAAGGAAAGTACTTGCAATCGATTCTGGAGAAAGCACAAGAGACTCTTGGAAGAC 714
|||||||||| |||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 650 AGGCTCAAGGGAAGTACCTGCAATCGGTTTTGGAGAAAGCACAAGAGACTCTTGGAAGAC 709
Query 715 AGAACCTAGGTGCAGCTGGGATTGAAGCAACAAAAGCTCAACTCTCAGAATTAGTATCTA 774
||||||| |||||||||||||| ||||| | |||| ||||||||| ||| |||||||||
Sbjct 710 AGAACCTCGGTGCAGCTGGGATCGAAGCTGCCAAAGTTCAACTCTCGGAACTAGTATCTA 769
Query 775 AAGTATCAGCAGAATATCCAGACTCTAGTTTCCTAGAACCGAAAGAACTCCAGAATCTAC 834
||||||||||||| || ||| ||||||||||||||||||| |||||||| || || |||
Sbjct 770 AAGTATCAGCAGAGTACCCAAACTCTAGTTTCCTAGAACCAAAAGAACTTCAAAACCTAT 829
Query 835 GC-CATCAACAGATGCAAACAGCCTATCCACCTAACTCCTCCCTGGACAGTTGCCTAACC 893
|| || ||||||||||||||| |||||||||| | | ||| || || |||||||| |||
Sbjct 830 GCTCA-CAACAGATGCAAACAAACTATCCACCTGATTGCTCTCTTGAAAGTTGCCTGACC 888
Query 894 TCAAGTGAAGGAAAC-CAGAAAGCCCC-AAAGATGCTTGA---CAACAGACTGGGATTAA 948
||||| || |||| | |||||| | | ||| ||||| || ||||||| | ||| |||
Sbjct 889 TCAAGCGAGGGAA-CGCAGAAAAACTCGAAA-ATGCTAGAGAACAACAGATTAGGACTAA 946
Query 949 GAACATATATCGGAGATTCAACTTCAGAGCAGAAAGAGATAATGGAAGAACCATTCTTCC 1008
|||| ||||| || |||||||| || |||||||||||||| |||||||||||||| ||||
Sbjct 947 GAACGTATATTGGTGATTCAACATCGGAGCAGAAAGAGATTATGGAAGAACCATTGTTCC 1006
Query 1009 ATCGAATGGAGCTCACATGGGCAGAAGAAGAAAGCCTCAGAGAGAGTAACAATAGGCCAT 1068
| ||||||||||||||||| |||||| | | | |||| | | || | ||||
Sbjct 1007 AAAGAATGGAGCTCACATGGACAGAAG--GT---C-TAAGAG-G-G-AA---T---CCAT 1051
Query 1069 ATCTTTCGACAATGGCTAAC--AACACAGAACCGAGAATCTCGTCAT-CAAGAA-GAAGC 1124
||||||| ||||||| | | || |||||| |||||||| | || || ||| ||||
Sbjct 1052 ATCTTTCAACAATGG-TGAGTGAAG-CAGAACAAAGAATCTCAT-ATTCA-GAAAGAAGT 1107
Query 1125 CCTGGAAGATTGTCAATAGGAGTGGGATTACATGAACACAGAGG--AGGGAGT-AGCAA- 1180
|| || ||||| ||||||||||| ||||| || | ||||| | | | | | | |||
Sbjct 1108 CCAGGTAGATTATCAATAGGAGTAGGATTGCACGGACACAAAAGCCAAC-A-TCAACAAG 1165
Query 1181 -CAACAGTGAGTATACAGAAGAAAGATTCAACGAGAATGGTGAAGATTGCAAGC-TTGAA 1238
||||| |||| || || ||| || || ||| || | ||| | ||| | || ||
Sbjct 1166 GCAACAATGAGGAT-CATAAGCTTGAAACA-CGA-AACCG-GAA-AG-GCATGGATTCAA 1219
Query 1239 ACACACACAAGAACAGCTCTAGATCTTAACACACACGACGAAAACTATGGCACAACGCGT 1298
|| ||| || ||| |||||| |||||||| | ||||||||| | |||||||||
Sbjct 1220 -CA-ACA---GA---GCT--AGATCTCAACACACATGTTGAAAACTATTGTACAACGCGT 1269
Query 1299 CCGAAACAGTTTGATTTGAATGGTTTCAGCTGGAATTGAGAA 1340
|||||||||| || |||||||||||||||||||| ||||||
Sbjct 1270 ACGAAACAGTTCGACTTGAATGGTTTCAGCTGGAACTGAGAA 1311
> AT5G18245.1 | Symbols: | other RNA | chr5:6028285-6033231 FORWARD
LENGTH=2323
Length=2323
Score = 745 bits (403), Expect = 0.0
Identities = 521/573 (91%), Gaps = 28/573 (5%)
Strand=Plus/Minus
Query 557 GAACTTGCCCATAAGTGATGCCCTTCAAATGCAAATAGAGGTTCAGAGAAGGCTACACGA 616
|||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 843 GAACTTACCCATAAGTGATGCCCTTCAAATGCAAATAGAGGTCCAGAGACGGCTACACGA 784
Query 617 GCAACTTGAGGTACAGCGACATTTGCAGCTCAGGATAGAGGCTCAAGGAAAGTACT-TGC 675
||||||| | || | || | | || ||| | || ||||| |||
Sbjct 783 GCAACTT---G---AG-G-TATCT--A--TC---ATATA--CT--------GTACTCTGC 749
Query 676 AATCGATTCTGGAGAAAGCACAAGAGACTCTTGGAAGACAGAACCTAGGTGCAGCTGGGA 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 AATCGATTCTGGAGAAAGCACAAGAGACTCTTGGAAGACAGAACCTAGGTGCAGCTGGGA 689
Query 736 TTGAAGCAACAAAAGCTCAACTCTCAGAATTAGTATCTAAAGTATCAGCAGAATATCCAG 795
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 688 TTGAAGCAACAAAAGCTCAACTCTCAGAATTAGTATCTAAAGTATCAGCAGACTATCCAG 629
Query 796 ACTCTAGTTTCCTAGAACCGAAAGAACTCCAGAATCTACGCCATCAACAGATGCAAACAG 855
||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||| |
Sbjct 628 ACTCTAGTTTCCTCGAACCGAAAGAACTGCAGAATCTACACCATCAACAGATGCAAAAAA 569
Query 856 CCTATCCACCTAACTCCTCCCTGGACAGTTGCCTAACCTCAAGTGAAGGAAAC-CAGAAA 914
| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 568 CGTATCCACCTAACTCCTCCCTGGACAGTTGCCTAACCTCAAGTGAAGGAA-CTCAGAAA 510
Query 915 GCCCCAAAGATGCTTGACAACAGACTGGGATTAAGAACATATATCGGAGATTCAACTTCA 974
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 509 GCCCCAAAGATGCTTGACAACAGACTGGGATTAAGAACATATATTGGAGATTCAACTTCA 450
Query 975 GAGCAGAAAGAGATAATGGAAGAACCATTCTTCCATCGAATGGAGCTCACATGGGCAGAA 1034
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 449 GAGCAGAAAGAGATAATGGAAGAGCCATTCTTCCATAGAATGGAGCTCACATGGGCAGAA 390
Query 1035 GAAGAAAGCCTCAGAGAGAGTAACAATAGGCCATATCTTTCGACAATGGCTAACAACACA 1094
||||||||||||||||||| | |||| |||||||||||||| ||||||| ||||||| ||
Sbjct 389 GAAGAAAGCCTCAGAGAGAATCACAACAGGCCATATCTTTCAACAATGGTTAACAACGCA 330
Query 1095 GAACCGAGAATCTCGTCATCAAGAAGAAGCCCT 1127
||||||||||||||||| ||||||||||| |||
Sbjct 329 GAACCGAGAATCTCGTCTTCAAGAAGAAGTCCT 297
Score = 348 bits (188), Expect = 1e-94
Identities = 207/216 (96%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 122 CAGACTTATGTATTACCAAAACCAGCACCAAGGAAAGAGCATCCTCTCTTCATCGAGAAT 181
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 CAGACTTATGTATTACCACAACCAGCACCAAGGAAAGAGCATCCTCTCTTCATCGAGAAT 1672
Query 182 GCCCA-TTCATTCTGAAAGGAATCCGTTCCTCAGGGGAAATGGCACAGGAGATTCTGGAC 240
||||| ||| |||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1671 GCCCATTTC-TTCTGAAAGGCATCCGTTCCTCAGAGGAAATGGCACAGGAGATTCTGGAC 1613
Query 241 TCATCCTCTCAACTGATGCAAAGCCAAGACTAAAATGGACTCCAGATCTTCACGAGAGAT 300
|||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1612 TCATTCTCTCCACTGATGCAAAGCCACGACTAAAATGGACTCCAGATCTTCACGAGAGAT 1553
Query 301 TTGTTGAAGCGGTCAATCAGCTTGGAGGAGGAGATA 336
|||||||||||||||| |||||||||||||||||||
Sbjct 1552 TTGTTGAAGCGGTCAACCAGCTTGGAGGAGGAGATA 1517
Score = 230 bits (124), Expect = 4e-59
Identities = 205/239 (86%), Gaps = 26/239 (11%)
Strand=Plus/Minus
Query 1369 CCTTTTTATGATAATCACACAGGAAATGAAAAGCCTTTGATTTCCTTTGTTAGATTGAGA 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 299 CCTTTTTATGATAATCACACAGGAAATGAAAAGCCTTTGATTTCCTTTGTTAGCTTGAGG 240
Query 1429 GATTCGTC------------TA--A----AA--CAAAAGAGACAATCTTGTGCAAAAATG 1468
|||||||| || | || |||||||||| ||||||||||| ||||
Sbjct 239 GATTCGTCTAAAAATTGAATTATTAGTCGAACTCAAAAGAGAC-ATCTTGTGCAACAATG 181
Query 1469 TGTAACACCATTAATTTGCGTAGTTATGATCTCatatatatatatataCAGATAAATTTA 1528
| ||||| |||||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct 180 TACAACACTATTAATTTGCGTAGTTATGATCTCAT-CATATA-A-ATACAGATAAATTTA 124
Query 1529 CTAACTTCATGGAAGATA-TCGAAATTCTTGAGAGAAGGACGTAAAGTTCCGTGCTTTT 1586
|||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct 123 CTAACTTCATGGAAGATACT-GAAATTCTTGAGAGAAGGACGTAAAGCTCCGTGCTTTT 66
Score = 148 bits (80), Expect = 1e-34
Identities = 84/86 (98%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 472 GTGTGATGACCATGGTAGAAGAAAACCCTCCTGAAGTAGACGAAAGTCACAGTGAGAGTT 531
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1002 GTGTGATGACCATGGTAGAAGAAAACCCCCCTGAAGTAGACGAAAGTCACAGTGAGAGTT 943
Query 532 TAAGCATTGGACCACAGCCGACCATG 557
||||||||||||||||||||| ||||
Sbjct 942 TAAGCATTGGACCACAGCCGAGCATG 917
Score = 137 bits (74), Expect = 3e-31
Identities = 76/77 (99%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 337 AGGCTACTCCTAAGACAATCATGAAAGTCATGGGTATTCCAGGCCTTACCTTATACCATC 396
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1428 AGGCTACTCCTAAGACAATCATGAAAGTCATGGGCATTCCAGGCCTTACCTTATACCATC 1369
Query 397 TCAAGAGTCATCTTCAG 413
|||||||||||||||||
Sbjct 1368 TCAAGAGTCATCTTCAG 1352
Score = 117 bits (63), Expect = 3e-25
Identities = 63/63 (100%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 411 CAGAAATATAGGCTAAGCAAGAATCTTAATGGACAAGCTAACAGCAGTTTAAACAAGACA 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 CAGAAATATAGGCTAAGCAAGAATCTTAATGGACAAGCTAACAGCAGTTTAAACAAGACA 1110
Query 471 AGT 473
|||
Sbjct 1109 AGT 1107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78363050745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5