BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488698
Length=514
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18250.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 745 0.0
AT3G04040.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 422 2e-117
> AT5G18250.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G04040.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:6033702-6035380 FORWARD LENGTH=661
Length=661
Score = 745 bits (403), Expect = 0.0
Identities = 465/494 (94%), Gaps = 7/494 (1%)
Strand=Plus/Plus
Query 25 AAAGTAAATGACGGATTCTGAGCATGATATCGATATCAGATGCCATCACTGCGCAGGCCC 84
|||| ||||||||||||||| ||||||||| || ||||||||||||||||||||||||||
Sbjct 89 AAAGAAAATGACGGATTCTGGGCATGATATTGAAATCAGATGCCATCACTGCGCAGGCCC 148
Query 85 TCTTACGAAAAATCTGGAAACCAGTAAATGGACTGTGGCTCCGTTCATCAGGGATAGCTT 144
|||||| | |||| |||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 149 TCTTACCAGAAATTTGGAAACCAGTAAATGGACTGTTGATCCGTTCATCAGGGATAGCTT 208
Query 145 CTCTATGATTGGATCAGCTGTTGGTGGTACTGCAAGTGCATTCATTGGATTTAACCATGC 204
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 209 TTCTATGATTGGATCAGCTGTTGGAGGTACTGCAAGTGCATTCATTGGATTTAACCATGC 268
Query 205 AATGCCTATTGTACGCAAGTGGATCAAAGGACCCATGTGGTTACATTTTCTTGTTGGGGC 264
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 AATGCCAATTGTACGCAAGTGGATCAAAGGACCCATGTGGTTACATTTTCTTGTTGGGGC 328
Query 265 ACCGCCTGTTATAGTTCTTTCATCAGCCTGTGCTGGACTAGCAGGTGGCACTGTACCGGC 324
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 329 ACCACCTGTTATAGTTCTTTCATCAGCATGTGCTGGACTAGCAGGTGGCACTGTACCGGC 388
Query 325 ACTGGCACAGCTCGCTTCATCTTCATACCGAGCTGCAGTCCATTCGTCTCAGCCACCACA 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 ACTGGCACAGCTCGCTTCATCTTCATACCGAGCTGCAGTCCATTCGTCTCAGCCACCACA 448
Query 385 AGCACAAAAGGATAACAAAATGCAAAAGTCTACAACTTCTCCTCTGTAAAT--CACACA- 441
|||||||||||||||||||||||| |||||||| ||||||||| |||||| ||||||
Sbjct 449 AGCACAAAAGGATAACAAAATGCAGAAGTCTACGACTTCTCCTTTGTAAACGACACACAC 508
Query 442 -GCACAGctctctctcttttgttcttattttctttctctccattttgtatgtcaaatctt 500
|||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||||||
Sbjct 509 AGCACAGCTCTCTCT-TTT-GTTCTTATTTA-TTTCTCTTCATTTTGTATGTCAAATCTT 565
Query 501 ctctttGAGAGAGA 514
||||||| |||||
Sbjct 566 TTCTTTGAAAGAGA 579
> AT3G04040.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G18250.1);
Has 58 Blast hits to 58 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:1047640-1049260
FORWARD LENGTH=765
Length=765
Score = 422 bits (228), Expect = 2e-117
Identities = 351/410 (86%), Gaps = 9/410 (2%)
Strand=Plus/Plus
Query 61 CAGATGCCATCACTGCGCAGGCCCTCTTACGAAAAATCTGGAAACCAGTAAATGGACTGT 120
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 156 CAGATGTCATCACTGCGCAGGCCCTCTTACGAAAAATCTGGAAACCAACGAATGGACTGT 215
Query 121 GGCTCCGTTCATCAGGGATAGCTTCTCTATGATTGGATCAGCTGTTGGTGGTACTGCAAG 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 GGCTCCGTTTATCAGGGATAGCTTCTCTATGATTGGATCAGCTGTTGGTGGTACTGCAAG 275
Query 181 TGCATTCATTGGATTTAACCATGCAATGCCTATTGTACGCAAGTGGATCAAAGGACCCAT 240
||| |||||||| ||| |||||| |||||| |||||||||||||||||||||||||||||
Sbjct 276 TGCTTTCATTGGGTTTCACCATGTAATGCCGATTGTACGCAAGTGGATCAAAGGACCCAT 335
Query 241 GTGGTTACATTTTCTTGTTGGGGCACCGCCTGTTATAGTTCTTTCATCAGCCTGTGCTGG 300
|||||| |||||||||||||| || || ||||| |||||| |||||||||||||||||||
Sbjct 336 GTGGTTGCATTTTCTTGTTGGTGCTCCACCTGTGATAGTTGTTTCATCAGCCTGTGCTGG 395
Query 301 ACTAGCAGGTGGCACTGTACCGGCACTGGCACAGCTCGCTTCATCTTCATACCGA-GCTG 359
||| ||||||||| |||||||||| | |||||||| || || || || || | | || |
Sbjct 396 ACTTGCAGGTGGCGCTGTACCGGCTTTAGCACAGCTTGCATCGTCGTCTTATC-ATGCGG 454
Query 360 CAGTCCATTCGTCTCAGCCACCACAAGCACAAAAGGATAACAAAATGCAAAAGTC-T--A 416
| || ||||| |||||||||||||||| ||| | | ||| || |||| || || | |
Sbjct 455 CTGTTCATTCATCTCAGCCACCACAAGGGCAAGATAAGAACCAATTGCACAATTCCTCTA 514
Query 417 CAACTTCTCCTCTGTAAATCACACAGCACAGctctctctcttttgttctt 466
| | ||||||| |||| || ||| || ||||||| ||| ||| ||||
Sbjct 515 CCATTTCTCCTTTGTAGATGTTACA-CA--GCTCTCT-TCTCTTGCTCTT 560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24564497883
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5