BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488703

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G18300.1 | Symbols: anac088, NAC088 | NAC domain containing ...   540    4e-153


> AT5G18300.1 | Symbols: anac088, NAC088 | NAC domain containing 
protein 88 | chr5:6057773-6058216 FORWARD LENGTH=444
Length=444

 Score =  540 bits (292),  Expect = 4e-153
 Identities = 394/442 (89%), Gaps = 11/442 (2%)
 Strand=Plus/Plus

Query  1    ATGTCGATGGTTGAAGAATTTTACGATGAAGAGGAAGAGC-TGGTTGGCTTTAGATTTAA  59
            ||| |||||  ||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct  4    ATGCCGATGACTGAAGAATTTTACGATGAAGAGGAAGAGCTTGGTT-GCTTTAGATTTAA  62

Query  60   TCCTTCAGAAGAAGAACTCATACTCGACTATCTTCTACCTAAGCTTGGCTTCTACCAACC  119
            ||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct  63   TCCTTCAGAAGAAGAACTCATACTCGATTATCTTCTACCAAAGCTTGGCTTCCACCAACC  122

Query  120  AAAAACGATATATTTATTAGAAGACAAGGACGAGATCTACGCCAAAGTGCCGTGGCGGCT  179
            ||| ||||||||||| |||||||||| |||| | ||||||||||||| ||||||||||||
Sbjct  123  AAACACGATATATTTGTTAGAAGACAGGGACAACATCTACGCCAAAGAGCCGTGGCGGCT  182

Query  180  TAAACACACAGAGAATGGTATTTTTGAACCTAACGAGTGGTTTTACTTCGTGAAAAAGAC  239
            ||| ||||||||||||| ||| ||||||||||||||||||||||| |||||||||| |||
Sbjct  183  TAATCACACAGAGAATGATATCTTTGAACCTAACGAGTGGTTTTATTTCGTGAAAAGGAC  242

Query  240  AAACCGCAAAGTTAAAGGTTGGAAAGCCACTGGAGGGTTGAAAGATGTCTTGTCCaaaaa  299
            ||| ||||||||||||||||||||||||||||||| ||| ||||||||| |||| || ||
Sbjct  243  AAATCGCAAAGTTAAAGGTTGGAAAGCCACTGGAGAGTTAAAAGATGTCGTGTCGAAGAA  302

Query  300  aaaCGGTAAAGTGATTGGGAAGAAGAGAAATCGCAGTTTCTACGTTGAAGGTGA--AC-G  356
            || |||| ||||||| ||||||||||| |||| ||| |||||||||||||||||  |  |
Sbjct  303  AACCGGTGAAGTGATCGGGAAGAAGAGGAATCTCAGGTTCTACGTTGAAGGTGATGAGAG  362

Query  357  ------GAGTGGTTGGACCATGACAGAGTATTCTTCCATCGGCAACCAAAACCAACTTCT  410
                  |||||||||||||||||  |||||||||||||| ||||| |||||||||| |||
Sbjct  363  CAAAACGAGTGGTTGGACCATGAGGGAGTATTCTTCCATTGGCAATCAAAACCAACGTCT  422

Query  411  CTGCCACCTCAAAGGACCGTGA  432
            ||||||||| |||||||| |||
Sbjct  423  CTGCCACCTTAAAGGACCATGA  444



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20509241592


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5