BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488704
Length=758
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18310.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1011 0.0
> AT5G18310.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 60 Blast hits
to 60 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa
- 7; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr5:6061706-6063148 FORWARD
LENGTH=793
Length=793
Score = 1011 bits (547), Expect = 0.0
Identities = 712/785 (91%), Gaps = 38/785 (5%)
Strand=Plus/Plus
Query 2 GAGAGAGAGATTGAAAGAAAGAGAAAGAAATCGCCATGGCTCATGGGAGATATGATAATT 61
|||||||||| || |||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 19 GAGAGAGAGAGAGATAGAAAGAGAAAGAAATCGTCATGGCTCATGGGAGATATGATACTT 78
Query 62 ACAAGAAGAAAAGTGGACAGATTCCTAGGTTTGGAGAATGGGAGGAAGCAAATGAGATGC 121
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 79 ACAAGAAGAAAAGTGGACAGATTCCTCGGTTTGGAGAATGGGAAGAAGCAAATGAGATGC 138
Query 122 CAATAACACAATACTTCGAGAATCCAAGACAAGCTGGTCTGATTCGTCACCATTACACAA 181
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 139 CAATAACACAATACTTTGAGAATCCAAGACAAGCTGGTCTGATTCGTCACCAATACACAA 198
Query 182 CCacttcttctgcttcttccactaccac-t-a-cttcttcatcttcttcttcttctGCAG 238
| |||||||||||||||||||||||||| | | |||| || |||||||||||||||||||
Sbjct 199 CAACTTCTTCTGCTTCTTCCACTACCACTTCATCTTCATCTTCTTCTTCTTCTTCTGCAG 258
Query 239 AAGCCCTAAAGCTTGCTTCT---CA--------C-CGT---C-CC-CG-TCCAAGACAGA 280
||||| |||||||||||||| || | ||| | || || || ||||||||
Sbjct 259 AAGCCTTAAAGCTTGCTTCTCACCATCCCCGTCCACGTCACCTCCACGCTCAAAGACAGA 318
Query 281 CGGCGGGGACGAAGGAAAAAAGAGGACCACAAAGGCGTGTGCGTGACGTCAGTGCACAGT 340
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 CGGCGGGGACGAAGGAGAAAAGAGGACCACAAAGGCGTGTGCGTGACGTCAGTGCACAGT 378
Query 341 CGGACAAGTATTACATTGACGTCAACGGTGTTAAGCAGTTCAAAAACGACGTCGCTCCGA 400
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 379 CGGACAAGTATTACATTGACGTCAACGGTGTTAAGCAGTTCAAAAACGACGTTGCTCTGA 438
Query 401 CTTCG-AGGCCACCTAAGCCCGTTGATGAAGATCTCTACAAGATTCCTCCTGAGTTTATT 459
||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 CTT-GTAAGCCACCTAAGCCCGTTGATGAAGATCTCTACAAGATTCCTCCTGAGTTTATC 497
Query 460 CATTCTTCAACAAGGAAGAGAAGGCCTAGCTTTTTAGCTTGTTTGGTTCCATGCGCATGA 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 CATTCTTCAACAAGGAAGAGAAGGCCTAGCTTTTTAGCTTGTTTGGTTCCATGCGCATGA 557
Query 520 ATTGagaagggagaatgaagagaagaagaagaaTAAAAAATAGGATTACGAATGAATAAT 579
|| || |||| | | || | |||||||||||| ||||| |||||| | |||||||||||
Sbjct 558 ATCGAAAAGG-A-A--GA-GCGAAGAAGAAGAAGAAAAAGTAGGATCATGAATGAATAAT 612
Query 580 GTAAttttttttttgttttttgttttttCATT-TAATATACATATATGATATATACGTGG 638
||||||| |||||||||||| || |||||| ||||||||| |||||||||||||||||
Sbjct 613 GTAATTTGTTTTTTGTTTTT-GTAATTTCATCCTAATATACAGATATGATATATACGTGG 671
Query 639 TTTGGCAGAAAAAGAGAGCATACGAATGGTTTA-GAGTAAAAGGAGTAACAAAGTAATAT 697
|||| |||||||||||||||||||| |||||| || ||||| ||||||||||||||||
Sbjct 672 TTTGACAGAAAAAGAGAGCATACGAGTGGTTTTTGA--AAAAG-AGTAACAAAGTAATAT 728
Query 698 CGTAGTAAACTAGAGTAAT----CCTTTTGTCTTGTTACATATCTACTTTATAAGATTTT 753
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 729 CGTAGTAAACTAGAGTAATATATCCTTTTGTCTTGTTACATATCTACTTTATAAGATTTT 788
Query 754 ATCTC 758
||||
Sbjct 789 CTCTC 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36821629751
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5