BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488708
Length=652
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18380.1 | Symbols: | Ribosomal protein S5 domain 2-like su... 918 0.0
AT2G09990.1 | Symbols: | Ribosomal protein S5 domain 2-like su... 811 0.0
AT3G04230.1 | Symbols: | Ribosomal protein S5 domain 2-like su... 481 4e-135
> AT5G18380.1 | Symbols: | Ribosomal protein S5 domain 2-like
superfamily protein | chr5:6090049-6090758 REVERSE LENGTH=710
Length=710
Score = 918 bits (497), Expect = 0.0
Identities = 602/649 (93%), Gaps = 21/649 (3%)
Strand=Plus/Plus
Query 25 ACTCTCTGCATTAGGTTTCATTTTAGCGGCAGAC--GAGAGCAAAAGCAAGGAGAAACCC 82
||||| |||||||||||||||||||||||||||| |||||| ||||||||||| |||||
Sbjct 1 ACTCTGTGCATTAGGTTTCATTTTAGCGGCAGACGAGAGAGCTAAAGCAAGGAGCAACCC 60
Query 83 TAACCATGGCGACTCAAGCAGCTGCTGAATCTGTGCAATGTTTCGGAAGGAAGAAGACCG 142
||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||
Sbjct 61 TAACCATGGCGACTCAACCAGCTACTGAATCTGTGCAATGCTTCGGAAGGAAGAAGACCG 120
Query 143 CAGTGGCCGTCACTCACTGCAAGCGTGGATCTGGTTTGATCAAGCTCAACGGTTCCCCAA 202
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 CAGTGGCCGTCACTCACTGCAAGCGTGGATCTGGTTTGATCAAGCTCAACGGTTGCCCAA 180
Query 203 TCGAGCTTTTCCAGCCTGAGATCCTCCGATTCAAGATCTTCGAGCCGGTTCTTCTCCTCG 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCGAGCTTTTCCAGCCTGAGATCCTCCGATTCAAGATCTTCGAGCCGGTTCTTCTCCTCG 240
Query 263 GAAAGCACCGTTTCGCAGGTGTGGACATGAGGATTCGTGTCAACGGTGGTGGTCACACTT 322
|||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| |
Sbjct 241 GAAAGCACCGTTTCGCTGGTGTGAACATGAGGATCCGTGTCAACGGTGGTGGTCACACAT 300
Query 323 CTCAGGTTTACGCTATCCGTCAGAGTATCGCGAAGGCTCTTGTTGCGTTCTACCAGAAGT 382
| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 CCCAGGTTTACGCCATCCGTCAGAGTATCGCGAAGGCTCTTGTTGCGTACTACCAGAAGT 360
Query 383 ATGTGGATGAGCAATCGAAGAAGGAGATTAAGGATGTCTTGGTGAGGTATGATAGGACTC 442
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 ATGTGGATGAGCAGTCGAAGAAGGAGATTAAGGATATCTTGGTGAGGTATGATAGGACTC 420
Query 443 TGCTTGTGGCGGATCCGAGAAGGTGTGAGCCGAAGAAGTTTGGTGGTCCTGGTGCTCGTG 502
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 421 TGCTTGTGGCGGATCCGAGGAGGTGTGAGCCGAAGAAGTTTGGTGGTCGTGGTGCTCGTT 480
Query 503 CTCGTTTCCAGAAGAGTTACCGTTAA-------T--TTTGT-TTTT------CAATTTGG 546
|||||| ||||||||||||||||||| | ||||| |||| ||||||||
Sbjct 481 CTCGTTACCAGAAGAGTTACCGTTAAACAAAGCTGGTTTGTGTTTTGTTTTTCAATTTGG 540
Query 547 AATCATCGTAAGGtttttttGG-AGTATGAACTTGTGAGACTCTT-AGAATTTATAATTT 604
|||||||||||||||||||||| |||||| ||||||||||||||| ||| ||||||||||
Sbjct 541 AATCATCGTAAGGTTTTTTTGGGAGTATGGACTTGTGAGACTCTTTAGATTTTATAATTT 600
Query 605 CAGTTTTATTATGCTTTTTGGATAATGGTGATTCTCCAAGAA-CTTATG 652
| | |||||||||||| |||||| |||||||||||||||||| ||||||
Sbjct 601 CTGCTTTATTATGCTTGTTGGATTATGGTGATTCTCCAAGAAACTTATG 649
> AT2G09990.1 | Symbols: | Ribosomal protein S5 domain 2-like
superfamily protein | chr2:3781328-3782049 FORWARD LENGTH=722
Length=722
Score = 811 bits (439), Expect = 0.0
Identities = 585/650 (90%), Gaps = 32/650 (5%)
Strand=Plus/Plus
Query 25 ACTCTCTGCATTAGGTTTCATTTTAGCGGCAGAC--GAGAGCAAAAGCAAGGAGAAACCC 82
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 50 ACTCTCTGCGTTAGGTTTCATTTTAGCGGCAGACGAGAGAGCAAAAGCAAGGAGAAACCC 109
Query 83 TAACCATGGCGACTCAAGCAGCTGCTGAATCTGTGCAATGTTTCGGAAGGAAGAAGACCG 142
||||||||||||| ||| ||||| |||||||||||||||| |||||||||||||||||||
Sbjct 110 TAACCATGGCGACACAACCAGCTACTGAATCTGTGCAATGCTTCGGAAGGAAGAAGACCG 169
Query 143 CAGTGGCCGTCACTCACTGCAAGCGTGGATCTGGTTTGATCAAGCTCAACGGTTCCCCAA 202
||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||
Sbjct 170 CAGTGGCCGTCACTCACTGCAAGCGTGGATCTGGTTTAATTAAGCTCAACGGTTGCCCAA 229
Query 203 TCGAGCTTTTCCAGCCTGAGATCCTCCGATTCAAGATCTTCGAGCCGGTTCTTCTCCTCG 262
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 230 TCGAGCTTTTCCAGCCAGAGATCCTCCGATTCAAGATCTTCGAGCCGATTCTTCTCCTCG 289
Query 263 GAAAGCACCGTTTCGCAGGTGTGGACATGAGGATTCGTGTCAACGGTGGTGGTCACACTT 322
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
Sbjct 290 GAAAGCACCGTTTCGCAGGTGTGAACATGAGGATCCGTGTCAACGGTGGTGGTCACACAT 349
Query 323 CTCAGGTTTACGCTATCCGTCAGAGTATCGCGAAGGCTCTTGTTGCGTTCTACCAGAAGT 382
| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 350 CACAGGTTTACGCCATCCGTCAGAGTATCGCGAAGGCTCTTGTTGCGTACTACCAGAAGT 409
Query 383 ATGTGGATGAGCAATCGAAGAAGGAGATTAAGGATGTCTTGGTGAGGTATGATAGGACTC 442
||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 410 ATGTGGATGAGCAGTCGAAGAAGGAGATTAAAGATATCTTGGTGAGGTATGATAGGACTC 469
Query 443 TGCTTGTGGCGGATCCGAGAAGGTGTGAGCCGAAGAAGTTTGGTGGTCCTGGTGCTCGTG 502
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 470 TGCTTGTGGCGGATCCGAGGAGGTGTGAGCCGAAGAAGTTTGGTGGTCGTGGTGCTCGTT 529
Query 503 CTCGTTTCCAGAAGAGTTACCGTTAA-------T---TTTGTTTTT---CAATTTGGAAT 549
|||||| ||||||||||||||||||| | ||| ||||| |||||| || |
Sbjct 530 CTCGTTACCAGAAGAGTTACCGTTAAACAAAGCTGGGTTTTTTTTTTTTCAATTTCGATT 589
Query 550 CATCGT-AAGGtttttttGGAGTAT--GAACTTGTGAGACTCT-T-AGAAT-TTATAATT 603
|||| | ||||||||| ||||| | || || || |||| | | ||| | ||| ||||
Sbjct 590 CATC-TCAAGGTTTTT--GGAGTTTTTGA--TTATG-GACT-TGTGAGACTCTTAGAATT 642
Query 604 TCAGTTTTATTATGCTTTTTGGATAA-TGGTGATTCTCCAAGAACTTATG 652
|| ||||||| || || |||||||| || ||||||||||||||||||||
Sbjct 643 TCTGTTTTATGAT--TTATTGGATAACTG-TGATTCTCCAAGAACTTATG 689
> AT3G04230.1 | Symbols: | Ribosomal protein S5 domain 2-like
superfamily protein | chr3:1112990-1113659 REVERSE LENGTH=670
Length=670
Score = 481 bits (260), Expect = 4e-135
Identities = 401/468 (86%), Gaps = 13/468 (3%)
Strand=Plus/Plus
Query 77 AAACCCTAACCATGGCGACTCAAGCAGCTG-CTGAATCTGTGCAATGTTTCGGAAGGAAG 135
|||||||| | |||||||| ||| | || | || ||||| ||||||||||||||||||
Sbjct 40 AAACCCTAGCAATGGCGACCCAACCGGC-GAAAGAGTCTGTTCAATGTTTCGGAAGGAAG 98
Query 136 AAGACCGCAGTGGCCGTCA-CTCACTGCAAGCGTGGATCTGGTTTGATCAAGCTCAACGG 194
||||| ||| || |||| || ||||||| || || || || |||| |||||||||||
Sbjct 99 AAGACGGCAACAGCAGTCACCT-ACTGCAAACGGGGCTCGGGCATGATTAAGCTCAACGG 157
Query 195 TTCCCCAATCGAGCTTT-TCCAGCCTGAGATCCTCCGATTCAAGATCTTCGAGCCGGTTC 253
||| || |||||||||| | ||||| ||||||||||||||||||||||||||||| || |
Sbjct 158 TTCGCCGATCGAGCTTTAT-CAGCCAGAGATCCTCCGATTCAAGATCTTCGAGCCAGTCC 216
Query 254 TTCTCCTC-GGAAAGCACCGTTTCGCAGGTGTGGACATGAGGATTCGTGTCAAC-GGTGG 311
|||||||| ||||| ||||||||||| || || ||||||||||| |||| | || || ||
Sbjct 217 TTCTCCTCGGGAAA-CACCGTTTCGCCGGAGTTGACATGAGGATCCGTG-CCACGGGCGG 274
Query 312 TGGTCACACTTCTCAGGTTTACGCTATCCGTCAGAGTATCGCGAAGGCTCTTGTTGCGTT 371
|||| |||| |||| ||| ||||| ||||||||||||||||| ||||| || ||||| ||
Sbjct 275 TGGTAACACATCTCGGGTCTACGCAATCCGTCAGAGTATCGCTAAGGCCCTCGTTGC-TT 333
Query 372 -CTACCAGAAGTATGTGGATGAGCAATCGAAGAAGGAGATTAAGGATGTCTTGGTGAGGT 430
|||||||||||| || |||||||| |||||||||||||| ||||| ||||| ||||||
Sbjct 334 ACTACCAGAAGTACGTTGATGAGCAGTCGAAGAAGGAGATCAAGGACATCTTGATGAGGT 393
Query 431 ATGATAGGACTCTGCTTGTGGCGGATCCGAGAAGGTGTGAGCCGAAGAAGTTTGGTGGTC 490
| ||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||
Sbjct 394 ACGATAGGACTCTTCTTGTTGCGGATCCGAGAAGGTGCGAGTCGAAGAAGTTTGGTGGTC 453
Query 491 CTGGTGCTCGTGCTCGTTTCCAGAAGAGTTACCGTTA-ATTTTGTTTT 537
||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct 454 CTGGTGCTCGTGCTCGTTTCCAGAAGAGTTACCGTTAGATTCTGGTTT 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31496810169
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5