BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488711
Length=1492
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18390.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2191 0.0
> AT5G18390.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:6090954-6092545 FORWARD LENGTH=1592
Length=1592
Score = 2191 bits (1186), Expect = 0.0
Identities = 1319/1384 (95%), Gaps = 6/1384 (0%)
Strand=Plus/Plus
Query 1 ATGTTCCTCCTCCGGCGTTATACCGGCGGGAGACTTTACTCGATTTTCACTGTTAGAACT 60
||||| ||||| || |||||| ||||||| || ||||||||||| || || | ||| |
Sbjct 1 ATGTTACTCCTTCGTCGTTATTCCGGCGGAAGTCTTTACTCGATCCTCCCTATCAGAGCC 60
Query 61 TCTATTGAATCTAGTATTCGTCATTTC-ACTAGTCTCGAGCCTTTGCAAAGCTCTGATTC 119
||||||||||||| ||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 61 TCTATTGAATCTACTATTCGTCATTTCAAC-AGCCTCGAGCCTTTGCAAAGCTCTGATTC 119
Query 120 GACTCCAACTAAAGGCGATTACTTCGCCGCGATCAACCACGTTGTCAACATCGTCCGCCG 179
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 GACTCCAACTAAAGGCGATTACTTCGCCGCGATCAACCACGTTGTCAATATCGTCCGCCG 179
Query 180 TGAGATTCATCCAGAGAGATCATTGAACAGTCTCCGTCTCCCTGTAACCTCCGAGTTCGT 239
|||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 180 CGAGATTCACCCGGAGAGATCATTGAACAGTCTCCGTCTACCTGTAACCTCCGAATTCGT 239
Query 240 GTTCAGAGTCCTCCGCGCAACCTCTCGTTCCGCCAATGATTCTCTCCGTTTCTTCAATTG 299
||||||||||||||||||||| ||||||||| |||| ||||||||||| |||||||||||
Sbjct 240 GTTCAGAGTCCTCCGCGCAACTTCTCGTTCCTCCAACGATTCTCTCCGATTCTTCAATTG 299
Query 300 GGCACGATCGAACCCTAGCTACACACCAACCTCCATGGAATATGAAGAGCTTGCTAAATC 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 GGCTCGATCGAACCCTAGCTACACACCAACCTCCATGGAATATGAAGAGCTTGCTAAGTC 359
Query 360 CTTAGCTTCACATAAAAAATACGAATCGATGTGGAAGATCCTCAAACAGATGAAGGATTT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTTAGCTTCACATAAAAAATACGAATCGATGTGGAAGATCCTCAAACAGATGAAGGATTT 419
Query 420 GTCTCTCGACATCTCCGGCGAGACTCTCTGCTTCATCATTGAGCATTACGGTAAGAACGG 479
|||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 420 GTCTCTCGACATCTCCGGTGAGACACTCTGCTTCATCATTGAGCAATACGGTAAGAACGG 479
Query 480 TCATGTAGATCAAGCCGTGGAGCTTTTCAATGGCGTCCCGAAGACTCTAGGATGTCAACA 539
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 TCATGTAGATCAAGCCGTAGAGCTTTTCAACGGCGTCCCGAAGACTCTAGGATGTCAACA 539
Query 540 AACCGTTGATGTTTACAATTCCTTGCTCCATGCGCTTTGTGATGTGAAGATGTTCCATGG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AACCGTTGATGTTTACAATTCCTTGCTCCATGCGCTTTGTGATGTGAAGATGTTCCATGG 599
Query 600 TGCTTATGCTTTGATCCGGCGAATGATTAGGAAAGGTCTTAAGCCGGATAAGCGGACATA 659
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 600 TGCTTATGCTTTGATTCGGCGAATGATTAGGAAAGGTCTCAAGCCTGATAAGCGGACATA 659
Query 660 CGCGATCTTAGTTAACGGATGGTGTTCCGCCGGAAAAATGAAGGAGGCTCAAGAGTTTCT 719
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 CGCTATCTTGGTTAACGGATGGTGTTCCGCTGGAAAAATGAAGGAGGCTCAAGAGTTTCT 719
Query 720 TGATGAAATGAGTAGGAAAGGGTTTAATCCACCGGCTCGTGGACGTGATTTGCTTATTGA 779
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 720 TGATGAAATGAGTAGGAGAGGGTTTAATCCACCGGCTCGTGGTCGTGATTTGCTTATTGA 779
Query 780 AGGTTTGTTAAATGCTGGTTACTTGGAATCTGCTAAAGAGATGGTG-GATAAGATGACCA 838
||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 780 AGGTTTGTTGAATGCTGGTTACTTGGAATCTGCTAAAGAGATGGTGAG-TAAGATGACCA 838
Query 839 AAGGAGGGTTTGTTCCTGATATATTAA-CTTTTAATACTCTGATTGAAGCTATATCTAAA 897
|||||||||||||||||||||| | || ||||||||| | ||||||||||||||||||||
Sbjct 839 AAGGAGGGTTTGTTCCTGATAT-TCAAACTTTTAATATTTTGATTGAAGCTATATCTAAA 897
Query 898 TCAGGGGAAGTTGAATTTTGCATTGAGATGTATTATACTGCTTGCAAGTTAGGTCTTTGT 957
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 898 TCAGGGGAAGTTGAATTTTGCATTGAGATGTATTATACAGCTTGCAAGTTAGGTCTTTGT 957
Query 958 GTAGATATCGACACTTACAAGACACTTATACCTGCGGTTTCAAAGATTGGAAAGATCGAT 1017
|||||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 958 GTAGATATTGATACTTACAAGACACTAATACCTGCGGTTTCAAAGATTGGAAAGATTGAT 1017
Query 1018 GAGGCGTTTCGGTTGTTGAACAATTGTGTGGAAGATGGGCATAAGCCGTTTCCGAGTTTG 1077
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GAAGCGTTTCGGTTGTTGAACAATTGTGTGGAAGATGGGCATAAGCCGTTTCCGAGTTTG 1077
Query 1078 TATGCTCCGATAATCAAGGGAATGTGTAGGAATGGGATGTTTGATGATGCCTTTAGCTTT 1137
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1078 TATGCTCCGATAATCAAAGGAATGTGTAGGAATGGGATGTTTGATGATGCATTTAGCTTT 1137
Query 1138 TTCAGCGACATGAAGGTGAAAGCTCATCCGCCTAACAGGCCGGTTTACACAATGCTGATT 1197
|| || |||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1138 TTTAGTGACATGAAGGTGAAGGCTCATCCGCCTAACAGGCCGGTTTATACAATGCTGATT 1197
Query 1198 ACAATGTGTGGTCGTGGTGGGAAATTCGTGGATGCAGCTAATTACTTGGTTGAGATGACA 1257
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1198 ACAATGTGTGGTCGTGGTGGGAAATTTGTGGATGCGGCTAATTACTTGGTTGAGATGACA 1257
Query 1258 GAGATGGGTTTGGTTCCGATATCACGGTGCTTTGATATGGTTACTGATGGGTTGAAGAAT 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GAGATGGGTTTGGTTCCGATATCACGGTGCTTTGATATGGTTACTGATGGGTTGAAGAAT 1317
Query 1318 AGCGGGAAGCATGATTTGGCTATGCGAATAGAGCAGTTGGAAGTTCAGCTTAGAGGAGTT 1377
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GGCGGGAAGCATGATTTGGCTATGCGAATAGAGCAGTTGGAAGTTCAGCTTAGAGGAGTT 1377
Query 1378 TGAT 1381
||||
Sbjct 1378 TGAT 1381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73593998970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5