BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488714
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18400.2 | Symbols: | Cytokine-induced anti-apoptosis inhib... 1644 0.0
AT5G18362.1 | Symbols: | Cytokine-induced anti-apoptosis inhib... 414 7e-115
AT5G46470.1 | Symbols: RPS6 | disease resistance protein (TIR-N... 158 1e-37
> AT5G18400.2 | Symbols: | Cytokine-induced anti-apoptosis inhibitor
1, Fe-S biogenesis | chr5:6092682-6094994 REVERSE LENGTH=1210
Length=1210
Score = 1644 bits (890), Expect = 0.0
Identities = 1007/1063 (95%), Gaps = 10/1063 (1%)
Strand=Plus/Plus
Query 1 AAAGGTCAGAAGATTTGATTTCTCTTATTCCTCTTCGAAGCCAAAGAATTTACAGAGAGA 60
||||||||||||||||||||| |||||||||||||| ||| |||| |||||||| || |
Sbjct 1 AAAGGTCAGAAGATTTGATTTTTCTTATTCCTCTTCAAAGGCAAACAATTTACACAGCTA 60
Query 61 TATATAT-TCTTTTAGGGTTTTTGAGTATCTCGCGAGGTTTTTCAGAGATTTCTCCAATA 119
||||||| | |||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 61 TATATATAT-TTTTAGGGTTTTTGAGTATCTCGCGAGGTTTTACATAGATTTCTCCATTA 119
Query 120 TGGATTCGATGGTGAATCAGAAGACTGTTTTGGCTGTGACGGATGATATGGTGTTGCCTG 179
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 120 TGGATTCGATGATGAATCAGAAGACTGTTTTGGCTGTGACGGATGATGTGGTGTTACCTG 179
Query 180 TTAGCTCTGTTCTAACTATAATGAAAGAGCTTGGCAAGGAAGTGATTGA-ACGTTTTGAT 238
||||||||||| || ||||||||||||||||||| |||||||||||||| | ||||||||
Sbjct 180 TTAGCTCTGTTTTAGCTATAATGAAAGAGCTTGGAAAGGAAGTGATTGAGA-GTTTTGAT 238
Query 239 CCTCTGATTATTACTCAAGCATCCACAATAAATCAGTTTCCTTTGGATGCTTCCTCAGTG 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 239 CCTCTGATTATTACTCAAGCATCCACAATAAATCAGTTTCCTTTGGATGCTTCCTCTGTG 298
Query 299 GACGCGGTTTTAGCCATTTCCAAAACATCTGATTTTCCC-AGTGATAAAATATGTGGTGA 357
|| ||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 299 GAGGCGGTATTAGCCATTTCCAAAACATCTGA-TTTCCCAAGTGATAAAATATGTGGTGA 357
Query 358 GTTCTCAAGAATCTTGAAGCCTGGTGGCACTGTTTTTGTGTGCAAAGTTTTGGAGGGTGA 417
|||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||
Sbjct 358 GTTCTCAAGAATCTTGAAGCCTGGCGGCACGGTTTCTGTGTGCAAAGTTTTGGAGGGTGA 417
Query 418 AACTGGAGAAATGCAACAGACCATTCAAAGGAGAGTGACGTTGGCTGGTTTTCTGGAGCC 477
||| |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 418 AACGGGAGAAATTCAACAGACCATTCAAAGGAGAGTGACATTGGCTGGTTTTCTTGAGCC 477
Query 478 ACAGTGTCTTGATTTGAAATCAATTAAGTTGTCTACGTTCAGTTTATCCTTTGGGATTAA 537
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 478 ACAGTGTCTTGATTTGAAATCAATTAAATTGTCTACGTTCAGTTTATCCTTTGGGATTAA 537
Query 538 GGCAAAGAAACCTTCTTGGAAGATTGGTTCATCATTTGCTCTCAAAAAGCCTGCAA-AAA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 538 GGCAAAGAAACCTTCTTGGAAGATTGGTTCATCATTTGCTCTCAAAAAGCCTGTAACAAA 597
Query 597 TTCTCTTAAAGGTTAATCTAGATGATGACTTGGATCTTATTGATGAAGATTCTCTTTTAA 656
| ||||| ||| || |||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 598 T-CTCTTTAAGATTGATCTAGATGACGACGTGGATCTTATTGATGAAGATTCTCTTTTAA 656
Query 657 CAGAGGAGGACTTGAAAAAACCACAGCTTCCTGTTGCCAGCGGTTGTGAGACCACCAAAA 716
||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 657 CAGAGGAGGACTTGATGAAGCCACAGCTTCCTGTTGCCAGCGGTTGTGAGACCACTAAAA 716
Query 717 AAGCTTGCAAGAACTGTGTCTGTGGTAGAGCTGAGATTGAGGAGAAAGCTGTGAAGCTGG 776
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 717 AAGCTTGCAAGAACTGCGTCTGTGGTAGAGCTGAAATTGAGGAGAAAGCTGTGAAGCTGG 776
Query 777 GCCTCACAGAGGATCAAATCGAGAATCCACAATCATCATGTGGCAGCTGTGGGCTCGGTG 836
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 777 GCCTCACAGAGGATCAAATCGAGAATCCACAATCATCATGCGGCAGCTGTGGGCTCGGTG 836
Query 837 ATGCCTTCCGTTGCGGTACATGCCCTTACAAGGGTCTGCCACCCTTCAAATTAGGCGAGA 896
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ATGCCTTCCGCTGCGGTACATGCCCTTACAAGGGTCTGCCACCCTTCAAATTAGGCGAGA 896
Query 897 AGGTATCCCTATCTCAAAACTTCCTTGAAGCTGACATATAAGCATGTGAAAGGTGCATCT 956
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 897 AGGTAACCCTATCTCAAAACTTCCTTGAAGCTGACATATAAGCATGTGAAAGG--CATCT 954
Query 957 TCATACATGGTTGTTTCTCACCGAGGCCAAAACCTTTTGCTAATCGCAGAGTAGTTTCAT 1016
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TCATACATGGGTGTTTCTCGCCGAGGCCAAAACCTTTTGCTAATCGCAGAGTAGTTTCAT 1014
Query 1017 CATTTACTTTGTTCTCTTTCGTATAATTTGTTTGTTGGTACTT 1059
|||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1015 CATTTACTTTGTGCCCTTTCGTATAATTTGTTTGTTGGTACTT 1057
> AT5G18362.1 | Symbols: | Cytokine-induced anti-apoptosis inhibitor
1, Fe-S biogenesis | chr5:6083088-6084362 REVERSE LENGTH=549
Length=549
Score = 414 bits (224), Expect = 7e-115
Identities = 269/290 (93%), Gaps = 5/290 (2%)
Strand=Plus/Plus
Query 536 AAGGCAAAGAAACCTTCTTGGAAGATTGGTTCATCATTTGCTCTCAAAAAGCCTGCAAAA 595
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 32 AAGGCAAA-AAAAATTCTTGGAAGATTGGTTCATCATTTGCTCTCAAAAAGCCTGCAAAA 90
Query 596 ATTCTCTTAAAGGTTAATCTAGATGATGACTTGGATCTTATTGATGAAGATTCTCTTTTA 655
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 91 TTTCTCTTAAAGGATAATCTAGATGATGACTTGGATCTTATTGATGAAGATTCTCTGCTA 150
Query 656 ACAGAGGAGGACTTGAAAAAACCAC-AGCTTCCTGTTGCCAGCGGTTGTGAGACCACCAA 714
|| ||||| |||||||| || || | || |||||| ||||||||||||||||||| ||||
Sbjct 151 ACGGAGGATGACTTGAAGAAGCCTCAAG-TTCCTGCTGCCAGCGGTTGTGAGACCCCCAA 209
Query 715 AAAAGCTTGCAAGAACTGTGTCTGTGGTAGAGCTGAGATTGAGGAG-AAAGCTGTGAAGC 773
|||||||||||||||||||||||||||| ||| |||||| || ||| |||||||||||||
Sbjct 210 AAAAGCTTGCAAGAACTGTGTCTGTGGTCGAGATGAGATCGA-GAGAAAAGCTGTGAAGC 268
Query 774 TGGGCCTCACAGAGGATCAAATCGAGAATCCACAATCATCATGTGGCAGC 823
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 TGGGCCTCACAGAGGATCAAATCGAGAATCCACAATCATCATGTGGCAGC 318
> AT5G46470.1 | Symbols: RPS6 | disease resistance protein (TIR-NBS-LRR
class) family | chr5:18842701-18849741 FORWARD LENGTH=4849
Length=4849
Score = 158 bits (85), Expect = 1e-37
Identities = 98/104 (94%), Gaps = 2/104 (2%)
Strand=Plus/Plus
Query 434 CAGACCATTCAAAGGAGAGTGACGTTGGCTGGTTTTCTGGAGCCACAGTGTCT-TGATTT 492
||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||
Sbjct 3977 CAGACCATTCAAAGGAGAGTGGCGTTGGCTGGTTTTCTGGAGCCACAGTGTCTCT-ATTT 4035
Query 493 GAAATCAATTAAGTTGTCTACGTTCAGTTTATCCTTTGGGATTA 536
|||||| |||||||||||||| |||||||||||||||||| |||
Sbjct 4036 GAAATCTATTAAGTTGTCTACATTCAGTTTATCCTTTGGGGTTA 4079
Score = 84.2 bits (45), Expect = 2e-15
Identities = 55/60 (92%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 889 AGGCGAGAAGGTATCCCTATCTCAAAACTTCCTTGAAGCTGACATATAAGCATGTGAAAG 948
||| || |||||||| ||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 4247 AGGGGACAAGGTATCTCTATCTCAAAACTTCCTTGAAGCTGACATATAACCATGCGAAAG 4306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5