BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488722
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18440.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Nuclear f... 1714 0.0
> AT5G18440.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Nuclear
fragile X mental retardation-interacting protein 1, conserved
region (InterPro:IPR019496); Has 1333 Blast hits to 1211
proteins in 205 species: Archae - 0; Bacteria - 137; Metazoa
- 339; Fungi - 162; Plants - 70; Viruses - 6; Other Eukaryotes
- 619 (source: NCBI BLink). | chr5:6112850-6115932 FORWARD
LENGTH=1743
Length=1743
Score = 1714 bits (928), Expect = 0.0
Identities = 1256/1406 (89%), Gaps = 55/1406 (4%)
Strand=Plus/Plus
Query 15 AGAGATTTAAAG-CTTAGAGTTCATAAGTTATCGTAAAACCCTAAACCCT-AGCAGAGCA 72
|||||||| ||| |||||||||| ||| ||| |||||||||||||||| ||| |||||
Sbjct 76 AGAGATTT-AAGTTTTAGAGTTCAAAAGCAATCCTAAAACCCTAAACCCTAAGCTGAGCA 134
Query 73 AAATCCTTCATAATGCGACCTCCGTTCAATTCCTTCCAGCCTCAAGCTCGTCCTTATCGA 132
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 135 AAATCCTTCATAATGCGACCTCCGTACAATTCCTTCCAGCCTCAAGCTCGTCCTTATCGA 194
Query 133 CCGCAACATCAACAACAACAAC-AGGTCTCTCTCTTTCTATTTTATTCTAATCACCACCA 191
||||||||||||| |||||||| | | || | |||| | | |||| || ||
Sbjct 195 CCGCAACATCAACTACAACAACAACAAC-AGATCAATGGGTTTTCTAATCATCAACAACA 253
Query 192 ACAACACAATGGGTATCAGAACCCAATGAACTCTAATCAATTAGGGATGATGAATCCACA 251
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 254 ACAACATAATGGGTATCAGAACCCAATGAACGCTAATCAATTAGGGATGATGAATCCACA 313
Query 252 GATGATGAGTAATCCAATGATGGGTCACATGAACAATCCTATTCCAATGCCTAATATGCC 311
|||||||| |||||||||||||||| | |||| | || |||||||| ||||||||
Sbjct 314 GATGATGAATAATCCAATGATGGGT--C----ACAA--C-ATGCCAATGCCCAATATGCC 364
Query 312 TATACATCCTCAGTTCTTTAACAATATGCCTCAACAACAACAACTTCATCAGTTTGCTAT 371
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 365 AATACATCCTCAGTTCTTTAACAATATGCCT------CAACAACTTCCTCAGTTTGCTAT 418
Query 372 GCCCAACCATATCAACCAGTTACTTCCCAATCTCTTGGGCAATCTTCAGTTTGCAGTTGC 431
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 419 GCCCAACCATATCAACCAGCTACTTCCCAATCTCTTGGGGAATCTTCAGTTTGCAGTTGC 478
Query 432 TAATAGTAACCTTATGGGTCACTCACTTCCCAATTTTTTCCAGCCTAATCTTGAACCTTC 491
||| |||||||||||||||||||| |||||||| |||||||||||| ||||||||| ||
Sbjct 479 TAACAGTAACCTTATGGGTCACTCTCTTCCCAACTTTTTCCAGCCTTCTCTTGAACC-TC 537
Query 492 -TGCTTTCACTTCTCGACCACAGCTTAATTCCTTTAACTCCCTTCCTTATCCTCCGG-T- 548
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 538 ATGCTTTCTCTTCTCGACCACAGCTTAATTCCTTTAACTCCCTTCCTTATCCTCCGGTTC 597
Query 549 ----T---C--C-AAATCACCAAT-TGCGGCCTCCGGGTTTCTCAGAGCCAAGACCACAA 597
| | | ||||||||||| | |||||||||||||||||||||||||||||| |
Sbjct 598 CAAATCCCCATCAAAATCACCAATCAG-GGCCTCCGGGTTTCTCAGAGCCAAGACCAC-A 655
Query 598 GTAGG-AAT-TGTCGATAGA-ACCAATGGTTCCGGTCCTAACGGAAATGATTTTCGAAAT 654
| || | | |||||||| | ||||||||||| ||||||||||| |||||||||||||||
Sbjct 656 G-GGGCAGTCTGTCGATA-ATACCAATGGTTCAGGTCCTAACGGGAATGATTTTCGAAAT 713
Query 655 AAATTTACCAAA-CATCAAAATTTCAAAGGCCCTGGTCAAGGATTCCAGAGACCTCAGTT 713
|| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 AAGTTT-CCAAAGCATCAAAATTTCAAAGGCCCTGGTCAAGGATTCCAGAGACCTCAGTT 772
Query 714 GCATCAAGCAGATAATGGAAAGAGAAAGTCTGGATTCAATAAGGATCACAGGGGCAAAGG 773
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 773 GCATCAAGCAGATAATGGCAAGAGAAAGTCTGGATTCAATAAGGATCACAGGGGCAAAGG 832
Query 774 GAACTATAATAAGATGAAAA-ATGGGCTCGATGGATCTGATGCTGGTAACATAGCTAAGG 832
|||| ||||||||||||||| | |||||||||||||||||| ||||||||||||||||||
Sbjct 833 GAACAATAATAAGATGAAAACA-GGGCTCGATGGATCTGATACTGGTAACATAGCTAAGG 891
Query 833 AGAAGAAAAGATCATATGCTTTGATGTATACACCAAAAGACGTTCACCAATGGCGTGAAG 892
|||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 892 AGAAGAAAAGATCATATGCTTTGATGTATACACCAAGAGAAGTTCAGCAATGGCGTGAAG 951
Query 893 CTCGGCGTAAGAATTTTCCAACGAGACTCAATGTTGAAAAGAAAGTAAAGAAAAATGTTT 952
|||| |||||||||| |||||||| | || |||||||||||||||||||||||||||||
Sbjct 952 CTCGACGTAAGAATTATCCAACGAAATTCCTTGTTGAAAAGAAAGTAAAGAAAAATGTTT 1011
Query 953 CAGCCAGCATCCTTGACGACGAAGCAAAACTTCGTCGTCAGCAACTCCGGGAAGTTCTAG 1012
|||||||||||||||| || ||||||||| | |||||||||||||||||||||||| |||
Sbjct 1012 CAGCCAGCATCCTTGATGAGGAAGCAAAAATGCGTCGTCAGCAACTCCGGGAAGTTTTAG 1071
Query 1013 CAAAGCAGGCTGAGTTAGGTGTTGAAGTTGCAGAAGTTCCTTCACATTATTTATCTAATA 1072
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1072 CAAAGCAGGCTGAGTTAGGTGTTGAAGTTGCAGAAGTTCCTTCGCATTATTTATCCAATA 1131
Query 1073 CA-GATGAACGAGTTCATGGAGATA-ATGGAGCCAACGATGGGCAAAAGGGAAAATTCCA 1130
| ||||||| |||| ||||||||| | ||| |||| |||||| ||||||| ||||||
Sbjct 1132 -ATGATGAACAAGTTAATGGAGATAGA-GGAAACAACAATGGGCGAAAGGGACGATTCCA 1189
Query 1131 GAACAATAGACATAAGCAGAGAAGACATGGTAGAAAAGACAAGTTTGATAA---GAAACC 1187
||| ||||||| ||| |||||||||||| |||||||| ||||||||||| ||||||
Sbjct 1190 GAATAATAGACGTAATAAGAGAAGACATGACAGAAAAGATAAGTTTGATAATAAGAAACC 1249
Query 1188 AAGACTCGATGACAAAAATTCATCTCAAGAATCTCCCATGACGACTAAAAAACCTACATT 1247
|||| | || |||||||| || |||||||| ||| |||| ||||||| ||||||||||||
Sbjct 1250 AAGATTGGAAGACAAAAAATCGTCTCAAGATTCTTCCATAACGACTAGAAAACCTACATT 1309
Query 1248 GCTTGAGAAGCTCCTAAGCTCAAACATAAAGAGAGACAAAAACCA-TATATTACAGGTCT 1306
||||||||||||||||||| || |||||||||||||||||| ||| | ||||||||||||
Sbjct 1310 GCTTGAGAAGCTCCTAAGCGCAGACATAAAGAGAGACAAAAGCCAGT-TATTACAGGTCT 1368
Query 1307 TCCGCTTCATGGTAATGAATTCATTTTTGAAGGAGTTTCCAGAGCAACCTCTGAAGTTAC 1366
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1369 TCCGCTTCATGGTAATGAATTCATTGTTGAAGGAGTTTCCAGAGCAACCTCTGAAGTTAC 1428
Query 1367 CTTTGATTACGGTAGAAGAAACTGGC 1392
|||||||||| ||| |||||||||||
Sbjct 1429 CTTTGATTACAGTAAAAGAAACTGGC 1454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74296806600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5