BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488725
Length=1801
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18460.1 | Symbols: | Protein of Unknown Function (DUF239) ... 2785 0.0
> AT5G18460.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr5:6122867-6126721 FORWARD LENGTH=1847
Length=1847
Score = 2785 bits (1508), Expect = 0.0
Identities = 1739/1843 (94%), Gaps = 45/1843 (2%)
Strand=Plus/Plus
Query 1 GAATCTTGATTTGATCTTCTTCTCGAAAACCTCATTGCTTCTGCTTCTTCTCTTCGATTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 GAATCTTGATTTGATCTTCTTCTCGAAAACCTCATTGCTTCTGCTTCTTCTCTTCCATTT 60
Query 61 CCATATTTACACTTCATAATATCTCTTCACCCACTTCTCTTCTTCCCCATTTATAACTCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCATATTTACACTTCATAATATCTCTTCACCCACTTCTCTTCTTCCCCATTTATAACTCA 120
Query 121 CAAATATATAC--A-T-TT--A--TATAT-T-TT-GG---GC----TAGCTATAGTAATT 162
||||||||||| | | || | ||||| | || || || ||||||||||||||
Sbjct 121 CAAATATATACATACTCTTACATTTATATATCTTGGGCTAGCTAAGTAGCTATAGTAATT 180
Query 163 CTCTAATATCTCTTTCCATTTTCTTGAAATGGTCCTCCTCTCACCTTAACTTTAATAAGA 222
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 TTCTAATATCTCTTTCCA-TTTCTTGAAATGGTCCTCCTCTCACCTTAACTTT-ATAAGA 238
Query 223 ATCTGACCTCCTCTCA-GTTTCCAATTTCTTCACTTTCTCGTTCTTTGGACACTGAATGT 281
|||||||| ||||||| ||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 239 ATCTGACCACCTCTCAGGTTTCCAGTTTCTTCACTTTCTCGTTCTCTGGACACTGAATGT 298
Query 282 GATACATATATACAAGAAGAAAGCTTTAAAAGATCGATCGATGGAGGTTG-TTGTTCTTG 340
|||||||||||| |||||||||||| ||| |||| |||||||||||| || ||||||||
Sbjct 299 GATACATATATAGAAGAAGAAAGCTATAAGAGATTGATCGATGGAGG-TGAATGTTCTTG 357
Query 341 CATCCAAGAGAAGTCTTCTTCTTTTTCTTCTTATTGTAAGTCTCTCTTTGAGCCAGAAGG 400
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CATCCAAGAGAAGTCTTCTCCTTTTTCTTCTTATTGTAAGTCTCTCTTTGAGCCAGAAGG 417
Query 401 TCATACATATCTCTGCCTTTAACGACAGCAAACCATACAGACAAGTCAGTAGCTTGAGAC 460
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 418 TCAGACATATCTCTGCCTTTAACGACACCAAACCATACAGACAAGTCAGTAGCTTGAGAC 477
Query 461 TTGCGAGGATCCAAAAGCACTTGAACAAGATCAACAAGTCTCCTGTCTTCACCATTCAGA 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTGCGAGGATCCAAAAGCACTTGAACAAGATCAACAAGTCTCCTGTCTTCACCATTCAGA 537
Query 521 GTCCAGATGGTGATGTAATAGATTGTGTACCCAAAAGAAAGCAGCCAGCTTTGGATCATC 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GTCCAGATGGTGATGTAATAGATTGTGTACCCAAAAGAAAGCAGCCAGCTTTGGATCATC 597
Query 581 CACTCTTAAAGCATCACAAGATTCAGAAAGCACCGAAGAAAATGCCGAAGATGAAGGGAA 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CACTCTTAAAGCATCACAAGATTCAGAAAGCACCGAAGAAAATGCCGAAGATGAAGGGAA 657
Query 641 AAGATGATGATGTTAAAGAAGCAGAGAATGTATTGGAAGGTGCATGGCAAATGTGGCACG 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AAGATGATGATGTTAAAGAAGCAGAGAATGTATTGGAAGGTGCATGGCAAATGTGGCACG 717
Query 701 TGAACGGCACGTGGTGTCCTAAGGGGACGGTTCCCATACGACGCAACACAATGAACGATG 760
||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 718 TGAACGGCACGAGGTGCCCTAAGGGGACCGTTCCCATACGACGCAACACAATGAACGATG 777
Query 761 TGCTCAGAGCCAAGTCTTTGTTTGACTTTGGCAAAAAGAGACGGAGTATTGACCTTGATC 820
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 778 TGCTCAGAGCCAAGTCTTTGTTTGACTTTGGCAAAAAGCGACGGAGTATTTACCTTGATC 837
Query 821 GACAGACAGAGAAGCCTGATGCACTTGGTACCAATGGACATGAGCATGCGATCGCGTATA 880
|| |||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 838 AACGGACAGAAAAGCCTGATGCCCTTGGTACCAATGGACATGAGCATGCGATCGCTTATA 897
Query 881 CGGAAACATCGTCGGAGATATATGGAGCAAAGGCGACGATAAACGTTTGGGATCCAAAGA 940
| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 898 CAGAATCATCGTCGGAGATATATGGAGCAAAGGCGACTATAAACGTTTGGGATCCAAAGA 957
Query 941 TAGAAGAAGTGAATGAGTTTAGTCTCTCTCAGATTTGGATTCTCTCTGGATCTTTCGTCG 1000
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 958 TAGAAGAAGTGAATGAGTTTAGTCTCTCTCAGATTTGGATTCTCTCTGGATCTTTCGTAG 1017
Query 1001 GTCCTGATCTCAATAGTATAGAAGCTGGCTGGCAGGTCAGTCCGGAGCTGTATGGTGACA 1060
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GTCCTGATCTCAATAGTATTGAAGCTGGCTGGCAGGTCAGTCCGGAGCTGTATGGTGACA 1077
Query 1061 ACAGACCAAGATTGTTCACTTATTGGACGAGTGATTCATATCAAGCAACAGGATGTTACA 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ACAGACCAAGATTGTTCACTTATTGGACGAGTGATTCATATCAAGCAACAGGATGTTACA 1137
Query 1121 ATCTTCTATGTTCTGGATTTATCCAAACAAATAACAAGATTGCCATTGGAGCAGCCATTT 1180
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1138 ATCTTCTATGTTCGGGATTTATCCAAACAAATAACAAGATTGCCATTGGAGCAGCCATAT 1197
Query 1181 CTCCTCTTTCTACTTTCAAAGGAAACCAATTTGATATCACAATACTCATTTGGAAGGATC 1240
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1198 CTCCTCTTTCTACGTTCAAAGGAAACCAGTTTGATATCACAATACTCATTTGGAAGGATC 1257
Query 1241 CGAAAATGGGGAATTGGTGGATGGGTTTAGGGGACAGTACACTAGTGGGGTATTGGCCAG 1300
|||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 1258 CGAAAATGGGGAATTGGTGGATGGGTTTAGGGGATAGCACACTAGTCGGGTATTGGCCAG 1317
Query 1301 CCGAGCTATTCACACACTTGGCCGACCACGCGACTACCGTGGAATGGGGCGGTGAGGTTG 1360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1318 CCGAGCTATTCACGCACTTGGCCGACCACGCGACTACCGTGGAATGGGGCGGTGAAGTCG 1377
Query 1361 TGAACACACGAGCTTCAGGCCGGCACACGACAACCCAAATGGGTTCTGGTCATTTTCCAG 1420
| |||||||| ||||||||| |||||||||| ||||||||||| ||||||||||||||||
Sbjct 1378 TCAACACACGTGCTTCAGGCAGGCACACGACGACCCAAATGGGCTCTGGTCATTTTCCAG 1437
Query 1421 ACGAAGGATTTGGAAAAGCAAGTTACTTTCGGAATTTGGAAGTTGTGGATTCGGACAACA 1480
||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1438 ACGAAGGGTTTGGGAAAGCAAGTTATTTTCGGAATTTGGAAGTTGTGGATTCGGACAACA 1497
Query 1481 GTCTCGTACCGGTGCGTGATGTCAAGATATTAGCCGAGAACACCGAATGTTACGACATTA 1540
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1498 GTCTCGTACCGGTGCATGATGTCAAGATACTAGCCGAGAACACCGAATGTTACGACATTA 1557
Query 1541 AGAGTTCGCATAATAATGAATGGGGAACTTATTTTTACTATGGTGGGCCGGGGTTTAATC 1600
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 AGAGTTCGTATAGTAATGAATGGGGAACTTATTTTTACTATGGTGGGCCGGGGTTTAATC 1617
Query 1601 CTAGGTGTAATTGAAATT---G-G------GTT-GG-----AGGAGTGGAGaaaaaaaaa 1644
|||||||||||||||||| | | ||| || |||||||||| ||||||||
Sbjct 1618 CTAGGTGTAATTGAAATTAAAGTGTACATAGTTCGGGTTGGAGGAGTGGAGGAAAAAAAA 1677
Query 1645 aaGGGG-TCGAA-TATGTAATTTTTT-CAATTACGGGTAGTGAAA-ATTGAATATTGGCT 1700
||||| ||||| ||||||||||||| ||| || ||||||||||| ||||||||||||||
Sbjct 1678 GAGGGGGTCGAAATATGTAATTTTTTTCAAGTATGGGTAGTGAAAGATTGAATATTGGCT 1737
Query 1701 TATTGTTTTTGATTTGTCGT-T-GTTGGTTTAAATCTAGTAATTTATTGCACTCATAGAA 1758
|||||||||||||||||| | | ||||||| ||||||||||||||||||| ||||||| |
Sbjct 1738 TATTGTTTTTGATTTGTCATATTGTTGGTTGAAATCTAGTAATTTATTGCCCTCATAGGA 1797
Query 1759 AAAAGAAGTGTGTATGCAATAATGAAAGTATGAGATAAATTTT 1801
||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1798 AAAAGAAGTGTGTATGCAATAATGAAAGTATGAGACAAATTTT 1840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89105967375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5