BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488726
Length=1454
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18470.1 | Symbols: | Curculin-like (mannose-binding) lecti... 2259 0.0
> AT5G18470.1 | Symbols: | Curculin-like (mannose-binding) lectin
family protein | chr5:6127797-6129285 FORWARD LENGTH=1489
Length=1489
Score = 2259 bits (1223), Expect = 0.0
Identities = 1385/1462 (95%), Gaps = 16/1462 (1%)
Strand=Plus/Plus
Query 1 CACTTATTCAAAGTTCTACAAAACTCATTAAAGATTTGAGAGTGTAAAAGGGACAAAAGG 60
||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 32 CACTTATACAAAGTTCTACGAAACTCATTAAAGATTTGAGAGTGTACAAGGGACAAAAGG 91
Query 61 TGCTATAAATCTCTC-TATAAAGAGAGCTAAAAGTTAAACAAACACTTAACCAAGCAAAC 119
|||||||||| |||| || ||||||||||||||||||| ||||||||||||||||||||
Sbjct 92 TGCTATAAATATCTCTTA-AAAGAGAGCTAAAAGTTAAGGAAACACTTAACCAAGCAAAC 150
Query 120 AACAAATGGCTCTTTCACTCGTTCTTGTTCCCTTCATTTTCCTTCTCATACCGACTTTTC 179
||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||
Sbjct 151 AACAAATGGCTCTTTCAATCGTTCTTCTTCCCTTCATTCTCATTCTCATACCGACTTTTC 210
Query 180 TCAGTTCGGTTTTCGCCATTTCACCACTCAAAACTGATACGTTAAAACCAGGGCAGCAGC 239
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 211 TCAGTTCGGTTTTCGCCGTTTCACCACTCAAAACTGATACGTTAAAACCGGGGCAGCAGC 270
Query 240 TCAGAGACTGGGAGCAGTTGATCTCTGCGGGTGGTATCTTCGCTCTCGGATTCTTTACAC 299
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 271 TCAGAGACTGGGAGCAGTTGATCTCTGCGGATGGTATCTTCACTCTCGGATTCTTTACAC 330
Query 300 CTAAAGAATCATCTACTTCCGAACTCGGGTCAGCTGGTCCTAGATATCTTGGTATCTGGC 359
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 331 CTAAAGACTCATCTACTTCCGAACTCGGGTCAGCTGGTCTTAGATATCTTGGTATTTGGC 390
Query 360 CTCAAAGGATTCCAATAAATCCAGTTTGGGTGGGTAACCCAATCGAATCGA-TTTCTGAT 418
||||||| ||||||||||||| |||||||||||||||||||| |||||| | ||||||||
Sbjct 391 CTCAAAGTATTCCAATAAATCTAGTTTGGGTGGGTAACCCAACCGAATC-AGTTTCTGAT 449
Query 419 TCATCTGGTGCTCTATCCATTGACACCAATGGGGTTCTAAAGATAACACAAGAAAATGCT 478
||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 450 TCATCTGGTTCTCTATCCATTGACACCAATGGGGTTCTAAAGATAACACAGGCAAACGCT 509
Query 479 TTTCCAATCTTGGTGAACCAAAGACCAGCCAG-GCAGCTTTCATT-GTCCGGGAATGTGT 536
||||||||||||||||||||||||||||| | |||||||||||| || |||||||||||
Sbjct 510 ATTCCAATCTTGGTGAACCAAAGACCAGCC-GCGCAGCTTTCATTGGT-CGGGAATGTGT 567
Query 537 CTGCCACTTTACTCGATTCCGGGAACTTTGTGGTCAGAGAGATCAGGCCAGGAGGAGTTC 596
|||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 568 CTGCCATTTTACTCGATACCGGGAACTTTGTGGTCCGAGAGATCAGGCCAGGAGGAGTTC 627
Query 597 CGGGTCGTGTTCTATGGCAAAGCTTTGACCATCCCACAAACACATTACTTCCCGGGATGA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 CGGGTCGTGTTCTATGGCAAAGCTTTGACCATCCCACAAACACATTACTTCCCGGGATGA 687
Query 657 AGATTGGGTTTAACCTTAGAACCAAGAAAGAAGTATCAGTTACTTCTTGGATAAGTGACC 716
|||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||
Sbjct 688 AGATTGGGTTTAACCTAAGAACCAAGAAAGAAGTATCAGTTACGTCTTGGATAACTGACC 747
Query 717 AAGTCCCAGTCCCAGGAGCATTCAGACTAGGACTAGACCCATCAGGAGCAAACCAGTTAC 776
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 748 AAGTCCCAGTCCCAGGAGCATTCAGACTAGGACTAGACCCATCAGGAGCTAACCAGTTAC 807
Query 777 TCGTCTGGCGCCGAGGTGAAATCTACTGGTCCAGTGGAATCTTGACGAACAATGGAAGCT 836
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 TCGTCTGGCGCCGCGGGGAAATCTACTGGTCCAGTGGAATCTTGACGAACAATGGAAGCT 867
Query 837 CTCATTTGACCTTAGA-GCTATCCAGACACTACATTGATTATGAATTCAAGTTCGATTCA 895
||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 868 CTCATTTGAACTTAGAAG-TATCCAGACACTACATTGATTATGAATTCAAGTTCGATTCA 926
Query 896 AATAAGTACATGAGGTACTTCAGCTACTCAATCAAGGAAGCTAACAGTTCGGTCTTGTCC 955
||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||| |||
Sbjct 927 AATAAGTACATGAAGTACTTCAGCTACTCAATCAAGAAAGCTAATAGTTCGGTCTTTTCC 986
Query 956 AGCTGGTTCTTGGATACTCTAGGCCAAATCACTGTAACCAATG-TGCTCAGCAGCAACAA 1014
||||||||||||||||||||||||||||||||||||||| | | |||||||| |||||
Sbjct 987 AGCTGGTTCTTGGATACTCTAGGCCAAATCACTGTAACCTTTTCT-CTCAGCAGTAACAA 1045
Query 1015 AAGCAGCAACTGGATTTCCGAAAGCAGTGAACCCTGCAAGACGGATTTAAAGAACAGTTC 1074
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 TAGCAGCACCTGGATTTCCGAAAGCAGTGAACCCTGCAAGACGGATTTAAAGAACAGTTC 1105
Query 1075 AGCAATCTGCATCAAGGAGAAGCCAACGGCTTGTAGGAAAGGGTCAGAGTATTTCGAACC 1134
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 AGCAATCTGCATCACGGAGAAGCCAACGGCTTGTAGGAAAGGGTCAGAGTATTTCGAACC 1165
Query 1135 GAGAAGAGGATACATGATGGATAATAATAACGGTTATTATCCGTTTTACTATGATGATAG 1194
|||||||||||||||||||| ||||||| |||||||||||| ||||||||||| |||||
Sbjct 1166 CAGAAGAGGATACATGATGGAAAATAATACCGGTTATTATCCATTTTACTATGACGATAG 1225
Query 1195 TTTAAGCGCTGGTCTTAGCGACTGTCATGGAAACTGCTGGAGAAACTGTTCTTGCATAGC 1254
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1226 TTTGAGCGCTGGTCTTAGCGACTGTCATGGAACCTGCTGGAGAAACTGTTCTTGCATAGC 1285
Query 1255 TTTCCAAGCCTTTCCTGATGGATGCCAATATTGGGAAAAAGGATCAAAGTTTGT-CCATT 1313
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1286 TTTCCAAGCCTTTCCTGATGGATGCCAATATTGGGAAAAAGGATCAAAGTTTGTTCC-TT 1344
Query 1314 ATGATAGCTTCAACTCCAATTTAATAACTTATGTTCTTGATTCTGTTAAGTGATGTGTGG 1373
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1345 ATGATAGCTTCAACTCCAATTTAGTAACTTATGTTCTTGATTCTGTAAAGTGATGTGTGG 1404
Query 1374 TTGCAACTTGTAA-GAGTAATTATGTAACCAGACTAGTATCAATAAAGGGCTTTATCAAG 1432
||| |||||| || ||| |||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 1405 TTGTAACTTG-AACGAGCAATTATGTAACCAGACTAGTATCAGTAAAGGGGTTTATTAAG 1463
Query 1433 AAGCTAAAGAATCAAGCAGTTC 1454
|| |||||||||||||||||||
Sbjct 1464 AAACTAAAGAATCAAGCAGTTC 1485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71686378260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5