BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488727
Length=1577
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18475.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2403 0.0
> AT5G18475.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:6129237-6131015 REVERSE LENGTH=1660
Length=1660
Score = 2403 bits (1301), Expect = 0.0
Identities = 1490/1581 (94%), Gaps = 13/1581 (1%)
Strand=Plus/Plus
Query 1 CGGTGGTGCCGTCAATCCAATAAGGTAAGAGATACAATGCGTTTCACAACTTCGATAATC 60
||||||||||||||||||||||| | | ||||||||||||| ||||||||||||||||||
Sbjct 88 CGGTGGTGCCGTCAATCCAATAA-G-AGGAGATACAATGCGCTTCACAACTTCGATAATC 145
Query 61 AATGAGCATCGCCGGTTCTCATCATCGTCAAGATCATGGGTATCTCCCATTTGCTTCTCG 120
||||| ||||||||||||||||| || ||| |||||||||||||||||||||||||||||
Sbjct 146 AATGAACATCGCCGGTTCTCATCGTCTTCACGATCATGGGTATCTCCCATTTGCTTCTCG 205
Query 121 GagaagaagaagaagaagCTAGACCCACCACCTGAATCCTCAATCTCAACTATGGAAACA 180
|||||||||||| | || | || ||||||||| |||||||| |||||| || ||||||||
Sbjct 206 GAGAAGAAGAAG-A-AACCAAG-CCCACCACCAGAATCCTCTATCTCACCTGTGGAAACA 262
Query 181 AACCCCAAAACCAAGTTTATCTCTCACGAATCTACTGTCAGTTTGATGAAACGAGAGAGA 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 263 AACCCCAAAACCAAGTTTATCTCTCACGAATCTGCTGTCAGTTTGATGAAACGAGAGAGA 322
Query 241 GATCCTCAACGTGCGCTTGATATCTTCAACAAAGCTTCTCAGCAGAAAGGTTTTAACCAT 300
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 GATCCTCAGGGTGTGCTTGATATCTTCAACAAAGCTTCTCAGCAGAAAGGTTTTAACCAT 382
Query 301 AACAATGCTACATACTCTGTTCTTTTGGATAACCTCGTTAGGCACAAGAAGTTTCTAGCT 360
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 383 AACAATGCTACATACTCTGTTCTTTTAGATAATCTCGTTAGGCACAAGAAGTTTCTAGCT 442
Query 361 GTTGATGCTATTCTTCATCAGATGAAGTACGAGACTTGCAGGTTCCAGGAAAGTTTGTTT 420
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 443 GTTGATGCCATTCTTCATCAGATGAAGTATGAGACTTGCAGGTTCCAAGAAAGTTTGTTT 502
Query 421 CTTAACCTGATGAGACATTTCTCCAGGTTTGATTTGCATGATAAAGTTATGGAGATGTTT 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 503 CTTAACCTGATGAGACATTTCTCCAGGTCTGATTTGCATGATAAAGTTATGGAGATGTTT 562
Query 481 AACTTGATTCAAGTGATTGCTCGTGTGAAGCCTTCTCTCAATGCCATTAGTACTTGTTTG 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 563 AACTTGATTCAAGTGATTGCTCGTGTCAAGCCTTCTCTCAATGCCATTAGTACTTGTTTG 622
Query 541 AATCTCCTTATTGATTCAGGGGAGGTTGATTTGGCCCGGAAACTACTCTTGTATGCCAAA 600
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 623 AATCTCCTTATTGATTCAGGGGAGGTTAATTTGTCCCGGAAACTACTCTTGTATGCCAAA 682
Query 601 CACAATCTTGGATTGCAGCCAAATACTTGCATTTTCAATATTTTAGTGAAGCACCACTGC 660
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 683 CACAATCTTGGATTGCAGCCAAATACTTGCATTTTCAATATTCTAGTGAAGCACCACTGC 742
Query 661 AAGAATGGGGATATCGATTCTGCATTTCGAGTTGTGGAGGAGATGAAAAGATCTGGGATT 720
||||||||||||||| ||| ||| |||| ||||||||||||||||||||| |||||||||
Sbjct 743 AAGAATGGGGATATCAATTTTGCGTTTCTAGTTGTGGAGGAGATGAAAAGGTCTGGGATT 802
Query 721 TCGTATCCCAATTCGATCACTTACTCAACCCTTATGGACTGTCTGTTTGCACACTCGAGG 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 TCGTATCCCAATTCGATCACTTACTCAACCCTTATGGACTGTCTGTTTGCACACTCGAGA 862
Query 781 TCCAAAGAAGCGGTGGAATTGTTTGAGGATATGATCTCGAAAAG-AGGGATTTCACCGGA 839
|| |||||||||||||||||||| ||||||||||||||| |||| ||||||||| || ||
Sbjct 863 TCGAAAGAAGCGGTGGAATTGTTCGAGGATATGATCTCG-AAAGAAGGGATTTCGCCAGA 921
Query 840 CCCTGTGATTTTCAACGTTATGATCAATGGATTCTGTCGTTCAGGGGAAGTCGAAAGAGC 899
|||||||| |||||| ||||||||||| |||||||||||| |||||||||| || |||||
Sbjct 922 CCCTGTGACTTTCAATGTTATGATCAACGGATTCTGTCGTGCAGGGGAAGTTGAGAGAGC 981
Query 900 CAAGATGATTTTAGACTTCATGAAGAAGAATGGATGCAACCCAAACGTATACAATTACTC 959
||||| ||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 982 CAAGAAGATTTTAGACTTCATGAAGAAGAATGGGTGCAACCCAAATGTGTACAATTACTC 1041
Query 960 GGCTCTAATGAATGGGTTCTGTAAAGAGGGAAAGATTCAGGAAGCTAAAC-AAGTCTTTG 1018
||||||||||||||||| ||||||| ||||||||||||||||||||||| || | ||||
Sbjct 1042 AGCTCTAATGAATGGGTTTTGTAAAGTGGGAAAGATTCAGGAAGCTAAACAAACT-TTTG 1100
Query 1019 ACGAGGTGAAGAAAACCGGGTTGAAACTCGACACAGTTGGTTATACCACATTGATGAACT 1078
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1101 ACGAGGTGAAGAAAACGGGGTTGAAACTCGACACTGTTGGTTATACCACATTGATGAACT 1160
Query 1079 GCTTGTGTAGAAATGGTGAAATTGATGAGGCTATGAAGTTACTTGGAGAGATGAAAGCAT 1138
|||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1161 GCTTTTGTAGAAATGGTGAAACTGATGAGGCTATGAAACTACTTGGAGAGATGAAAGCAT 1220
Query 1139 CCAGATGCAGGGCTGATGCATTAACTTATAATGTAATACTCAGGGGCTTGTCCAGCGAAG 1198
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 CCAGATGCAGAGCTGATACATTAACTTATAATGTAATACTCAGGGGCTTGTCCAGCGAAG 1280
Query 1199 GAAGATCAGAGGAAGCTCTTCAGATGCTGGATCAATGGGGATGTGAAGGAGTTCATCTTA 1258
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1281 GAAGATCAGAGGAAGCTCTTCAGATGCTGGATCAATGGGGATCTGAAGGAGTTCATCTGA 1340
Query 1259 ACAAAGGTAGTTATAGGATCATACTGAACGCGTTGTGTTGTAATGGCGAGCTCGAGAAAG 1318
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1341 ACAAAGGTAGTTATAGGATCATATTGAACGCGTTGTGTTGTAATGGTGAGCTCGAGAAAG 1400
Query 1319 CGGTAAAGTTTATGAGTGTGATGTC-GAAGAGAGGGATTTGGCCTCACCATGCGACTTGG 1377
|||| |||||| ||||||||||||| || |||||||||||||||||||||||| ||||||
Sbjct 1401 CGGTGAAGTTTCTGAGTGTGATGTCTGA-GAGAGGGATTTGGCCTCACCATGCTACTTGG 1459
Query 1378 AATGAATTGGTGGTTCGGCTTTGTGAATCCGGGAATACAGAAATTGGGGTTCGAGTTCTG 1437
||||||||||||||||||||||| ||||||||| |||||||||| |||||||| |||||
Sbjct 1460 AATGAATTGGTGGTTCGGCTTTGCGAATCCGGGTATACAGAAATCGGGGTTCGGGTTCTT 1519
Query 1438 ATTGGATTTCTT-GGAATAGGTCTCCTACCAGCGCCCAAATCTTGGGGAGCTGTGGTTGA 1496
||||||||||| ||| |||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1520 ATTGGATTTCTGAGGA-TAGGTCTCATACCAGGGCCCAAATCTTGGGGAGCTGTGGTTGA 1578
Query 1497 ATCAATTTGCAAAGAGAGGAAGTTGGTGCATGTCTTTGAACAGCTTGATTCTTTAGTTTC 1556
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1579 ATCAATTTGTAAAGAGAGGAAGTTGGTGCATGTCTTTGAACTGCTTGATTCTTTAGTTTC 1638
Query 1557 TTGATAAAACCCTTTATTGAT 1577
|| ||||| ||||||| ||||
Sbjct 1639 TTAATAAACCCCTTTACTGAT 1659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77861045295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5