BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488728 Length=1805 Score E Sequences producing significant alignments: (Bits) Value AT5G18480.1 | Symbols: PGSIP6 | plant glycogenin-like starch in... 2772 0.0 > AT5G18480.1 | Symbols: PGSIP6 | plant glycogenin-like starch initiation protein 6 | chr5:6131203-6133906 REVERSE LENGTH=1837 Length=1837 Score = 2772 bits (1501), Expect = 0.0 Identities = 1718/1820 (94%), Gaps = 25/1820 (1%) Strand=Plus/Plus Query 1 AACGAAGAAATTTCAAAATC-TATTTCAATTCAACGTATACTTTCCTCAAATTAGGAATT 59 |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 28 AACGAAGAAAATTCAAAATCTTATTTCAATTCAACGTATACTTTCCTTAAATTAGGAATT 87 Query 60 T--TTTCTCCACAAAATTGAGATCCGAATAACTATGGTGAGACTCAAGACGAGTCTCTGG 117 | ||| || | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 88 TGGTTT-TCGAGAAAATTGAGATCCGAATAACTATGGTGAGACTCAAGACGAGTCTCTGG 146 Query 118 GTTCTTCTCCTCGCGCTCGTTTCATCAATTCAGTTAAAGGGTTCGTTTGGATCTGAACCA 177 ||||||||||| || |||| || |||||||||||||| |||||||||||||||||| || Sbjct 147 GTTCTTCTCCTTGCCCTCG-TT--TCAATTCAGTTAAATGGTTCGTTTGGATCTGAATCA 203 Query 178 AGTAAAGTAGCTTATGTCACACTTTTGTATGGTGATGAGTTCTTATTGGGAGTTAGGGTA 237 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 204 AGTAAAGTAGCTTATGTCACACTTTTGTATGGAGATGAGTTCTTATTAGGAGTTAGGGTA 263 Query 238 TTGGGAAAATCGATTCGTGACACTGGATCCAAAAAAGATATGGTCGCTTTGGTTTCTGAT 297 ||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 264 TTGGGTAAATCGATTCGTGACACTGGATCCACTAAGGATATGGTCGCTTTGGTTTCTGAT 323 Query 298 GGTGTCTCAGACTACTCTAACAAGCTACTCAAGGCTGATGGATGGAAAGTTGAGAAGATT 357 |||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| Sbjct 324 GGTGTCTCAGACTACTCTAAGAAGTTACTCAAGGCTGATGGATGGAAAGTAGAGAAGATT 383 Query 358 AGTTTACTGGCAAATCCAAATCAAGTTCATCCGACAAGGTTCTGGGGTGTTTATACAAAG 417 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 384 AGTTTACTGGCAAATCCAAATCAAGTTCATCCGACTAGGTTCTGGGGTGTTTATACAAAG 443 Query 418 CTTAAGATCTTTAACATGACTGATTACAAGAAAGTTGTGTATCTTGATGCTGATACTATT 477 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 444 CTTAAGATCTTTAACATGACTGATTATAAGAAAGTTGTGTATCTTGATGCTGATACTATT 503 Query 478 GTGGTAAAGAACATTGAGGATCTGTTCAAGTGTTCCAAGTTTTGCGCAAACTTGAAGCAT 537 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 504 GTGGTAAAGAACATTGAGGATCTGTTTAAGTGTTCTAAGTTTTGCGCAAACTTGAAGCAT 563 Query 538 TCTGAGAGGCTAAACTCTGGTGTCATGGTTGTTGAACCATCTGAAGCTCTTTTCAATGAT 597 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 564 TCTGAGAGGCTAAACTCTGGTGTGATGGTTGTTGAACCATCTGAAGCTCTTTTTAATGAC 623 Query 598 ATGATGCGAAAAGTCAAGACTTTGTCATCTTATACCGGAGGAGACCAAGGGTTCTTGAAT 657 |||||||| ||||| ||||||||||| |||||||| |||||||| ||||||||||||||| Sbjct 624 ATGATGCGGAAAGTGAAGACTTTGTCTTCTTATACTGGAGGAGATCAAGGGTTCTTGAAT 683 Query 658 TCCTACTATCCAGATTTCCCAAATGCTCGTGTTTTCGATCCGAGTGTAACCCCTGAAGTC 717 || || ||||| |||||||| |||||||||||||||||||| |||||||| ||||||||| Sbjct 684 TCGTATTATCCGGATTTCCCGAATGCTCGTGTTTTCGATCCTAGTGTAACTCCTGAAGTC 743 Query 718 TTGAAAACCAGACCAGTTCCTGCTATGGAGAGGCTTTCTACATTATACAATGCGGATGTT 777 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 744 TTGAAAACCAGACCAGTTCCTGCTATGGAGAGGCTTTCGACATTATACAATGCGGATGTT 803 Query 778 GGTCTTTATATGCTTGCTAATAAGTGGATGGTTGATGACAGTAAACTTCACGTTATTCAC 837 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 804 GGTCTTTATATGCTTGCTAATAAGTGGATGGTTGATGACAGTAAACTTCACGTCATTCAC 863 Query 838 TACACTCTAGGCCCTCTTAAGCCTTGGGACTGGTGGACAGCATGGCTTGTGAAACCTGTT 897 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 864 TACACTCTAGGCCCTCTTAAGCCTTGGGACTGGTGGACAGCATGGCTCGTGAAACCTGTT 923 Query 898 GATGCTTGGCAAAGCATTAGGGTAAAGCTTGAGGAAACTCTTCCTGCAACTGGAGGTGGC 957 ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 924 GATGCTTGGCATAGCATTAGGGTAAAGCTTGAGGAAACTCTTCCTGGAACTGGAGGTGGT 983 Query 958 AAAAACCAACATGATGAACTCGTCGTCAAGTTCCTTTTCTTGTTACCTCTTTGTGGACTT 1017 | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 984 AGTAACCAACATGATGAACTCGTCGTCAAGTTCCTTTTCTTGTTACCTCTTTGTGCACTT 1043 Query 1018 TTGTTCTGCATTTACCGATCCATTCAGGTTCGTGAGGGTTCATTGTGCTGGAGCTCGTTC 1077 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1044 TTGTTCTGCATTTACCGATCCATTCAGGGCCGTGAGGGTTCATTGTGCTGGAGCTCGTTC 1103 Query 1078 AGCAATCATATTAGATATCTTTATTACCAAA-TTAGATCTAATGGAACACTTGGTTATAG 1136 |||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| | Sbjct 1104 AGCAATCAGATTAGATATCTTTATTAC-AAAGTTAGATCTAATGGAACACTTGGTTATGG 1162 Query 1137 CGGTATATCTACCATGAATCCCAGCTATCAACCCCACAGTGGCAGCGCACAGTCCAAGGT 1196 |||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 1163 CGGTGTATCTACCATGAGTCCCAGCTATCAACCCCACAGTGGCAACGCACAGTCCAAGGT 1222 Query 1197 TCCTCAACACTTGGGCGCGGTTGCAGTTGTCGTCTGTTTTACTGCTCTTCTGTTATCTCT 1256 |||||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||||||| Sbjct 1223 TCCTCAACACTTAGGCGCAGTTTCAGTTGTCGTCTGTTTTACTGCTGTTCTGTTATCTCT 1282 Query 1257 TGGAATATCCTTTGCGATTGTGCCGAGGCAAATCATGCCATGGACTGGCTTGGTCTTGGT 1316 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1283 TGGAATTTCCTTTGCGATTGTGCCTAGGCAAATCATGCCATGGACTGGCTTGGTCTTGGT 1342 Query 1317 GTATGAATGGACTTTTACAATCTTCTCTCTTTTGTTTGGT-TGCTTCTTGCTTTTTGTGC 1375 |||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||| Sbjct 1343 GTATGAATGGACTTTTACAATCTTCTTTCTTTTGTTTGGTGT-CTTCTTGCTTTTTGTGC 1401 Query 1376 ATCTACATGGAAAGAAAATAGCAATACAATCAGAATCATCATCCTTGGATGATTCCGCAA 1435 ||| ||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 1402 ATCAACATGGAAAGAGAATAGCGATACAATCAGAATCATCTTCCTTGGATGATTCCGCAA 1461 Query 1436 AAGTTCATCAGCGAGCAGGTGTGTCTTGTGACGTTACTACATTGTATTATGGATTAGGGA 1495 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1462 AAGTTCATCAGCGAGCAGGTGGGTCTTGTGACGTTACTACATTGTATTATGGATTAGGGA 1521 Query 1496 TGGCTTTTTTGGCTATTGCTGCAGTTTCTTTACCTTACATTTTAGGGATCACTGCTTTAT 1555 |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1522 TGGCTTTTCTGGCTATTGCTGCAGTTTCTTTACCTTACATTTTGGGGATCACTGCTTTAT 1581 Query 1556 TCACGAGGTTGGGTCTAATGGTGGGTGTAGCCATAATTCTAGCTGCCTTCATGACTTATG 1615 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1582 TCACGAGGTTGGGTCTAATGGTGGGTCTAGCCATAATTCTAGCTGCCTTCATGACTTATG 1641 Query 1616 CTTCAGAGCACCTCGCGGTCAGATGGTTCTTGAAAGGTCTAGAAGACCGTCGCGACACGA 1675 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 1642 CTTCAGAGCACCTCGCGGTGAGATGGTTCTTGAAAGGTCTAGAAGACCGTCGTGACACGA 1701 Query 1676 CAAGATCAAATTCCTTATGTTTCCTCTGCTGACTGCAAAA---GTAAAAGTGTCACC--T 1730 | |||||||||||| ||||||||||||| |||| ||||| |||||||||||||| | Sbjct 1702 CGAGATCAAATTCCCTATGTTTCCTCTGTTGACAACAAAATATGTAAAAGTGTCACCAAT 1761 Query 1731 -----TTGTAACTTGCAGAAACAACAGAGCCAATCTATAATCCTGTCTTGAAATGGTTAA 1785 ||||||||| |||||||||||||||| | ||||| ||||||||||||||||| Sbjct 1762 CACCATTGTAACTTTCAGAAACAACAGAGCC--T--ATAATTCTGTCTTGAAATGGTTAC 1817 Query 1786 AGCTTTGTTCTTTCTTTGTC 1805 | |||||||||||||||||| Sbjct 1818 ACCTTTGTTCTTTCTTTGTC 1837 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89306769555 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5