BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488728
Length=1805
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18480.1 | Symbols: PGSIP6 | plant glycogenin-like starch in... 2772 0.0
> AT5G18480.1 | Symbols: PGSIP6 | plant glycogenin-like starch
initiation protein 6 | chr5:6131203-6133906 REVERSE LENGTH=1837
Length=1837
Score = 2772 bits (1501), Expect = 0.0
Identities = 1718/1820 (94%), Gaps = 25/1820 (1%)
Strand=Plus/Plus
Query 1 AACGAAGAAATTTCAAAATC-TATTTCAATTCAACGTATACTTTCCTCAAATTAGGAATT 59
|||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 28 AACGAAGAAAATTCAAAATCTTATTTCAATTCAACGTATACTTTCCTTAAATTAGGAATT 87
Query 60 T--TTTCTCCACAAAATTGAGATCCGAATAACTATGGTGAGACTCAAGACGAGTCTCTGG 117
| ||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 88 TGGTTT-TCGAGAAAATTGAGATCCGAATAACTATGGTGAGACTCAAGACGAGTCTCTGG 146
Query 118 GTTCTTCTCCTCGCGCTCGTTTCATCAATTCAGTTAAAGGGTTCGTTTGGATCTGAACCA 177
||||||||||| || |||| || |||||||||||||| |||||||||||||||||| ||
Sbjct 147 GTTCTTCTCCTTGCCCTCG-TT--TCAATTCAGTTAAATGGTTCGTTTGGATCTGAATCA 203
Query 178 AGTAAAGTAGCTTATGTCACACTTTTGTATGGTGATGAGTTCTTATTGGGAGTTAGGGTA 237
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 204 AGTAAAGTAGCTTATGTCACACTTTTGTATGGAGATGAGTTCTTATTAGGAGTTAGGGTA 263
Query 238 TTGGGAAAATCGATTCGTGACACTGGATCCAAAAAAGATATGGTCGCTTTGGTTTCTGAT 297
||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 264 TTGGGTAAATCGATTCGTGACACTGGATCCACTAAGGATATGGTCGCTTTGGTTTCTGAT 323
Query 298 GGTGTCTCAGACTACTCTAACAAGCTACTCAAGGCTGATGGATGGAAAGTTGAGAAGATT 357
|||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||
Sbjct 324 GGTGTCTCAGACTACTCTAAGAAGTTACTCAAGGCTGATGGATGGAAAGTAGAGAAGATT 383
Query 358 AGTTTACTGGCAAATCCAAATCAAGTTCATCCGACAAGGTTCTGGGGTGTTTATACAAAG 417
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 384 AGTTTACTGGCAAATCCAAATCAAGTTCATCCGACTAGGTTCTGGGGTGTTTATACAAAG 443
Query 418 CTTAAGATCTTTAACATGACTGATTACAAGAAAGTTGTGTATCTTGATGCTGATACTATT 477
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 444 CTTAAGATCTTTAACATGACTGATTATAAGAAAGTTGTGTATCTTGATGCTGATACTATT 503
Query 478 GTGGTAAAGAACATTGAGGATCTGTTCAAGTGTTCCAAGTTTTGCGCAAACTTGAAGCAT 537
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 504 GTGGTAAAGAACATTGAGGATCTGTTTAAGTGTTCTAAGTTTTGCGCAAACTTGAAGCAT 563
Query 538 TCTGAGAGGCTAAACTCTGGTGTCATGGTTGTTGAACCATCTGAAGCTCTTTTCAATGAT 597
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 564 TCTGAGAGGCTAAACTCTGGTGTGATGGTTGTTGAACCATCTGAAGCTCTTTTTAATGAC 623
Query 598 ATGATGCGAAAAGTCAAGACTTTGTCATCTTATACCGGAGGAGACCAAGGGTTCTTGAAT 657
|||||||| ||||| ||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 624 ATGATGCGGAAAGTGAAGACTTTGTCTTCTTATACTGGAGGAGATCAAGGGTTCTTGAAT 683
Query 658 TCCTACTATCCAGATTTCCCAAATGCTCGTGTTTTCGATCCGAGTGTAACCCCTGAAGTC 717
|| || ||||| |||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 684 TCGTATTATCCGGATTTCCCGAATGCTCGTGTTTTCGATCCTAGTGTAACTCCTGAAGTC 743
Query 718 TTGAAAACCAGACCAGTTCCTGCTATGGAGAGGCTTTCTACATTATACAATGCGGATGTT 777
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 744 TTGAAAACCAGACCAGTTCCTGCTATGGAGAGGCTTTCGACATTATACAATGCGGATGTT 803
Query 778 GGTCTTTATATGCTTGCTAATAAGTGGATGGTTGATGACAGTAAACTTCACGTTATTCAC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 804 GGTCTTTATATGCTTGCTAATAAGTGGATGGTTGATGACAGTAAACTTCACGTCATTCAC 863
Query 838 TACACTCTAGGCCCTCTTAAGCCTTGGGACTGGTGGACAGCATGGCTTGTGAAACCTGTT 897
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 864 TACACTCTAGGCCCTCTTAAGCCTTGGGACTGGTGGACAGCATGGCTCGTGAAACCTGTT 923
Query 898 GATGCTTGGCAAAGCATTAGGGTAAAGCTTGAGGAAACTCTTCCTGCAACTGGAGGTGGC 957
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 924 GATGCTTGGCATAGCATTAGGGTAAAGCTTGAGGAAACTCTTCCTGGAACTGGAGGTGGT 983
Query 958 AAAAACCAACATGATGAACTCGTCGTCAAGTTCCTTTTCTTGTTACCTCTTTGTGGACTT 1017
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 984 AGTAACCAACATGATGAACTCGTCGTCAAGTTCCTTTTCTTGTTACCTCTTTGTGCACTT 1043
Query 1018 TTGTTCTGCATTTACCGATCCATTCAGGTTCGTGAGGGTTCATTGTGCTGGAGCTCGTTC 1077
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1044 TTGTTCTGCATTTACCGATCCATTCAGGGCCGTGAGGGTTCATTGTGCTGGAGCTCGTTC 1103
Query 1078 AGCAATCATATTAGATATCTTTATTACCAAA-TTAGATCTAATGGAACACTTGGTTATAG 1136
|||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| |
Sbjct 1104 AGCAATCAGATTAGATATCTTTATTAC-AAAGTTAGATCTAATGGAACACTTGGTTATGG 1162
Query 1137 CGGTATATCTACCATGAATCCCAGCTATCAACCCCACAGTGGCAGCGCACAGTCCAAGGT 1196
|||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1163 CGGTGTATCTACCATGAGTCCCAGCTATCAACCCCACAGTGGCAACGCACAGTCCAAGGT 1222
Query 1197 TCCTCAACACTTGGGCGCGGTTGCAGTTGTCGTCTGTTTTACTGCTCTTCTGTTATCTCT 1256
|||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1223 TCCTCAACACTTAGGCGCAGTTTCAGTTGTCGTCTGTTTTACTGCTGTTCTGTTATCTCT 1282
Query 1257 TGGAATATCCTTTGCGATTGTGCCGAGGCAAATCATGCCATGGACTGGCTTGGTCTTGGT 1316
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1283 TGGAATTTCCTTTGCGATTGTGCCTAGGCAAATCATGCCATGGACTGGCTTGGTCTTGGT 1342
Query 1317 GTATGAATGGACTTTTACAATCTTCTCTCTTTTGTTTGGT-TGCTTCTTGCTTTTTGTGC 1375
|||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||
Sbjct 1343 GTATGAATGGACTTTTACAATCTTCTTTCTTTTGTTTGGTGT-CTTCTTGCTTTTTGTGC 1401
Query 1376 ATCTACATGGAAAGAAAATAGCAATACAATCAGAATCATCATCCTTGGATGATTCCGCAA 1435
||| ||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1402 ATCAACATGGAAAGAGAATAGCGATACAATCAGAATCATCTTCCTTGGATGATTCCGCAA 1461
Query 1436 AAGTTCATCAGCGAGCAGGTGTGTCTTGTGACGTTACTACATTGTATTATGGATTAGGGA 1495
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1462 AAGTTCATCAGCGAGCAGGTGGGTCTTGTGACGTTACTACATTGTATTATGGATTAGGGA 1521
Query 1496 TGGCTTTTTTGGCTATTGCTGCAGTTTCTTTACCTTACATTTTAGGGATCACTGCTTTAT 1555
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1522 TGGCTTTTCTGGCTATTGCTGCAGTTTCTTTACCTTACATTTTGGGGATCACTGCTTTAT 1581
Query 1556 TCACGAGGTTGGGTCTAATGGTGGGTGTAGCCATAATTCTAGCTGCCTTCATGACTTATG 1615
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1582 TCACGAGGTTGGGTCTAATGGTGGGTCTAGCCATAATTCTAGCTGCCTTCATGACTTATG 1641
Query 1616 CTTCAGAGCACCTCGCGGTCAGATGGTTCTTGAAAGGTCTAGAAGACCGTCGCGACACGA 1675
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1642 CTTCAGAGCACCTCGCGGTGAGATGGTTCTTGAAAGGTCTAGAAGACCGTCGTGACACGA 1701
Query 1676 CAAGATCAAATTCCTTATGTTTCCTCTGCTGACTGCAAAA---GTAAAAGTGTCACC--T 1730
| |||||||||||| ||||||||||||| |||| ||||| |||||||||||||| |
Sbjct 1702 CGAGATCAAATTCCCTATGTTTCCTCTGTTGACAACAAAATATGTAAAAGTGTCACCAAT 1761
Query 1731 -----TTGTAACTTGCAGAAACAACAGAGCCAATCTATAATCCTGTCTTGAAATGGTTAA 1785
||||||||| |||||||||||||||| | ||||| |||||||||||||||||
Sbjct 1762 CACCATTGTAACTTTCAGAAACAACAGAGCC--T--ATAATTCTGTCTTGAAATGGTTAC 1817
Query 1786 AGCTTTGTTCTTTCTTTGTC 1805
| ||||||||||||||||||
Sbjct 1818 ACCTTTGTTCTTTCTTTGTC 1837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89306769555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5