BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488733
Length=1592
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18520.1 | Symbols: | Lung seven transmembrane receptor fam... 2553 0.0
AT3G09570.1 | Symbols: | Lung seven transmembrane receptor fam... 754 0.0
> AT5G18520.1 | Symbols: | Lung seven transmembrane receptor family
protein | chr5:6144963-6146570 FORWARD LENGTH=1608
Length=1608
Score = 2553 bits (1382), Expect = 0.0
Identities = 1533/1602 (96%), Gaps = 25/1602 (2%)
Strand=Plus/Plus
Query 1 GTTATTCAATCCTCCTCCTACACGTCTCTCTCTCATTCCCTCCGGAG----TAACAATGA 56
||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||
Sbjct 9 GTTATTCAATCCTCCTCTTACACGTCTCTCTCTCATTCCCCCCGGAGTAACTAACAATGG 68
Query 57 CGAAAATGCCCCTCTCCGTCGTCTTCATCCTCCTCTTCCT-CGCCGTCGTGGTT-C-CAC 113
||||||||||||||||||||||| || |||||||||| || ||||| | | || | | |
Sbjct 69 CGAAAATGCCCCTCTCCGTCGTCGTCTTCCTCCTCTT-CTCCGCCG-C-T--TTCCTCGC 123
Query 114 C-T-TCTCTGGCGGAGATCAAATCCCTCGTCATCTCGGACGACGCTCGTCCGATGATCCT 171
| | ||| |||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 124 CGTATCTATGGCGGAGATCAAATCACTCGTCATCTCCGATGACGCTCGTCCGATGATCCT 183
Query 172 CTTCGAGAAATTCGGATTCACACACACCGGCCACGTCACCGTCTCAATCTCCTCCGTCTC 231
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 184 CTTCGAGAAATTCGGATTCACACACACCGGCCACGTCACGGTCTCAATCTCCTCCGTCTC 243
Query 232 CGTCGTCTCCACTTCCGCAGATCCAAATCCAGAAGCATCGCGTCTCGGATTCTTCCTCCT 291
|||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 244 CGTCGTGTCCACTTCCTCAGATCCGAATCCAGAAGCATCGCGTCTCGGATTCTTCCTCCT 303
Query 292 CTCCGAAGAATCTCTTCTCCAGGTCCTCCTCGAGATCCAACAGAACCCTAGATTCTGCGT 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CTCCGAAGAATCTCTTCTCCAGGTCCTCCTCGAGATCCAACAGAACCCTAGATTCTGCGT 363
Query 352 TCTAGATTCGCACTACGTCACTCATCTCTTCACATTCAGAGATCTATCTCCTCCGCCAAA 411
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 364 TCTAGATTCGCACTACGTCACTCATCTCTTCACATTCAGAGATCTATCTCCTCCTCCAAA 423
Query 412 CTCCAGATTCAACCAATCTTACCCAGTCACTTCCCCAAACGAATACTCTCTCTTCTTCGC 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 CTCCAGATTCAACCAATCTTACCCAGTCACTTCCCCAAACGAATACTCTCTCTTCTTCGC 483
Query 472 GAATTGCGTCCCTGAAACCAAAGTTTCCATGGCGGTTCGCACAGAGATGTATAACAAAGA 531
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 484 GAATTGTGTCCCTGAAACCAAAGTTTCCATGGCGGTTCGTACAGAGATGTATAACAAAGA 543
Query 532 TCCAAACGGATCTAAAGACTATCTACCAGCTGGATCTACTCAATTGCCAACTCTCTACTC 591
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 544 TCCAAACGGATCTAAAGACTATTTACCAGCTGGATCTACTCAATTACCAACTCTCTACTC 603
Query 592 CTTCTTCTTCCTCTGCTACGTTGCTTTCCTCGGTTTCTGGAGCTACACTTGCTGGACCAA 651
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 604 TTTCTTCTTCCTCTGCTACGTTGCTTTCCTCGGTTTCTGGAGCTACACTTGCTGGACTAA 663
Query 652 CAAACAAACCGTTCATCGGATCCATCTTCTCATGGCAGGGCTGCTTCTTATCAAATCGTT 711
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 664 CAAACAAACCGTTCATCGGATCCATCTTCTCATGGCAGGTCTTCTTCTTATCAAATCGTT 723
Query 712 GAATCTGATTTGTGCAGCTGAAGATAAACATTACGTGAAGATCACTGGAACGCCTCATGG 771
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 724 GAATCTCATCTGTGCAGCTGAAGATAAACATTACGTGAAGATCACTGGAACGCCACATGG 783
Query 772 CTGGGATATTCTCTTCTACATCTTCCAATTCATCCGTGTTGTTCTTCTCTTCACCGTGAT 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 784 CTGGGATATTCTCTTCTACATCTTCCAATTCATCCGTGTTGTTCTTCTCTTCACCGTCAT 843
Query 832 CATCTTGATCGGAACTGGCTGGTCGTTTTTGAAACCTTTCTTGCAGGAGAAAGAGAAGAA 891
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 844 CATCTTGATCGGAACTGGCTGGTCGTTTTTGAAACCTTTCTTGCAGGAGAAGGAGAAGAA 903
Query 892 TGTGTTGATCATTGTGATCCCACTTCAGGTATTAGCCAACATTGCTTCCATTGTCATTGG 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 TGTGTTGATCATTGTGATCCCACTTCAGGTATTAGCCAACATTGCTTCCATTGTCATTGG 963
Query 952 TGAAACTGGACCTTTTATCAAAGATTGGGTTACTTGGAACCAAGTGTTTTTGCTTGTGGA 1011
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 964 TGAAACTGGACCTTTTATCAAAGATTGGGTTACATGGAACCAAGTGTTTTTGCTTGTGGA 1023
Query 1012 TATCATCTGTTGCTGTGCTATTATCTTCCCCATTGTCTGGTCTATTCGATCCTTGAGAGA 1071
|||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct 1024 TATCATCTGTTGCTGTGCTATTATCTTCCCGATTGTTTGGTCGATTCGATCTTTGAGAGA 1083
Query 1072 GACCTCGAAAACCGATGGTAAAGCTGCGAGGAACTTGTCGAAGCTCACGTTGTTTAGACA 1131
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 AACCTCGAAAACCGATGGTAAAGCTGCGAGGAACTTGTCGAAGCTCACGTTGTTTAGACA 1143
Query 1132 GTTCTACATTGTTGTCATCGGATATCTTTACTTCACGAGAATCGTGGTGTTTGCGCTTAA 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 GTTCTACATTGTTGTCATCGGATATCTTTACTTCACGAGAATCGTGGTGTTTGCGCTTAA 1203
Query 1192 AACCATTGCGGCTTATAAGTACCAGTGGGTGAGTTTTGCAGCGGAGGAGATTGTGAGTTT 1251
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1204 AACCATTGCGGCTTATAAGTACCAGTGGGTGAGCTTTGCAGCTGAGGAGATTGTGAGTTT 1263
Query 1252 GGTGTTCTATGTGATCATGTTTCATATGTTTAGGCCTGAGGAGAAGAATGAGTACTTTGC 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 GGTGTTCTATGTGATCATGTTTCATATGTTTAGGCCTGAGGAGAAGAATGAGTACTTTGC 1323
Query 1312 TGTTGATGATGATGAAGAAGAAGCTGCTGCTTTGGCTCTTAGGGACGAAGAATTCGAGCT 1371
|||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 1324 TGTTGATGATGATGAAGAAGAAGCTGCTGCTTTGGCCCTTAGGGACGAAGAGTTTGAGCT 1383
Query 1372 TTGAAAAGCATACACATGGAGGAATTTTTCTTGGTAAGCAAGGATTTATTCttttttttt 1431
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1384 TTGAAAAGCATACA-ATGGAGGA-TTTTTCTTGGTAAGCAAGGATTTATTCTTTTTCT-- 1439
Query 1432 ttCAGTATGTCTATGTT-AAAGTCGTCTAATACTGCAACTGTTATTGTTCCcttttttgt 1490
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1440 --CAGTATGTCTATGTTTAAAGTCGTCTAATACTGCAACTGTTATTGTTCCCTTTTT-GT 1496
Query 1491 taatttttgttcttctttacatttaaattttctctgttatcaacactttttaTGGCTTTA 1550
||| |||||||||| | |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1497 TAAATTTTGTTCTT-T--ACATTTAAATTTTCTCTGTTATCAACACCTTTTATGGCTTTA 1553
Query 1551 AATCGATGTGGATTTTGGGGCTGTAGCAAATTTTATTTGAAA 1592
||| |||||||||||||||||||||||||||||||||||||
Sbjct 1554 TATCAATGTGGATTTTGGGGCTGTAGCAAATTTTATTTGAAA 1595
> AT3G09570.1 | Symbols: | Lung seven transmembrane receptor family
protein | chr3:2940446-2942109 FORWARD LENGTH=1664
Length=1664
Score = 754 bits (408), Expect = 0.0
Identities = 973/1241 (78%), Gaps = 57/1241 (5%)
Strand=Plus/Plus
Query 121 GGCGGAGATCAAATCCCTCGTC-ATCTCGGACGACGCTCGTCCGATGATCCTCTTCGAGA 179
||||||||||||||| ||| | ||||| ||||| || | |||||||| |||||||| |
Sbjct 144 GGCGGAGATCAAATCTCTC-ACAATCTCCGACGATTCTAGGCCGATGATTCTCTTCGA-A 201
Query 180 AA-TTCGGATTCACACACACCGGCCACGTCACCGTCTCAATCTCCTCCGTCTCCGTCGTC 238
|| ||||||||||| || ||||||| || | |||||| || ||||| || | || ||
Sbjct 202 AAGTTCGGATTCACTCAGTCCGGCCATGTTAGCGTCTCTATTTCCTCTGTAGCAGTAGTA 261
Query 239 TCCACTTCCG-CAGATCCAAAT-CCAGAAGCATCG-CGTCTCGGATTCTTCCTCCTCTCC 295
|| ||| || | ||||| || || || ||||| || | || |||||||| | ||
Sbjct 262 TCTTCTT-CGTCTGATCC-GATCCCGGATCCATCGAGGT-TAGGGTTCTTCCTTATGTCA 318
Query 296 GAAGAATCTCTTCTCCAGGTCCTCCTCGAGATCCAACAGAACCCTAGA-TTCTGCGTTCT 354
|| ||||| ||||||||||| || | |||||| | || ||||| | | ||||| || ||
Sbjct 319 GAGGAATCGCTTCTCCAGGTAGTCTTAGAGATCGAGCAAAACCCCA-ACTTCTGTGTACT 377
Query 355 AGATTCGC-ACTACGTCACT-CATCTCTTCACA-TTCAGAGATCTATCTCCTCCGCCAAA 411
||||| | | |||||| || |||||||||||| |||| ||||| |||||||| ||
Sbjct 378 CGATTC-CAATTACGTC-CTCCATCTCTTCACATTTCA-CGATCTCTCTCCTCCCCCTGG 434
Query 412 CTCCAGATTCAACCAATCT-TACCCAGTCACT-TCCCCAAACGAATACTCTCTCTTCTTC 469
|||| || | | || | | || || || | | || || |||||||||||||||||||||
Sbjct 435 TTCCAAATACGAGCACT-TGTATCCGGTGA-TGTCTCCGAACGAATACTCTCTCTTCTTC 492
Query 470 GCGAATTGCGTCCCTGAAACCAAAGTTTCCATGGCGGTTCGCACAGAGATGTATAACAAA 529
| ||||||||| || ||||||||| |||| ||| |||||| || |||||||| || |
Sbjct 493 GTGAATTGCGTACCGGAAACCAAAATTTCGATGAAGGTTCGAACGGAGATGTACAATTTA 552
Query 530 GATCCAAACGGATCTAAAGACTATCTACCAGCTGGATCTACTCAATT-GCC-AACTCTCT 587
||||| ||||| ||||| || || || || || || || || | ||| || | | | |
Sbjct 553 GATCCGAACGGGTCTAAGGATTACCTTCCTGCCGGGTCAACCCGATTACCCGGA-T-TGT 610
Query 588 ACTCCTTCTTCTTCCTCTGCTACGTT-GCTTTCCTCGGTTTCTGGAGCTACACTTGCTGG 646
| | |||||||| |||| | ||| || |||||||| ||| ||||| | || |||| |||
Sbjct 611 ATTTCTTCTTCTCCCTCGGTTAC-TTAGCTTTCCTTGGTCTCTGGGGATATGCTTGTTGG 669
Query 647 ACCAACAAACAAACCGTTCATCGGATCCATCTTCTCATGGCAGG-GCTGCTTCTT-ATCA 704
||| |||| |||||| |||||||| |||| ||||| || |||||| || || |
Sbjct 670 GTCAATAAACGTGTTGTTCATAGGATCCATGTTCTTATGGC-GGCTCTGCTT-TTAATGA 727
Query 705 AATCGTTGAATCTGATTTGTGCAGCTGAAGATAAACATTACGTG-AAGATCACTGGAACG 763
| | ||||||||||| || || || || ||||| ||||||||| ||| |||| || ||
Sbjct 728 AGGCTTTGAATCTGATCTGCGCCGCCGAGGATAAGCATTACGTGAAAG-TCACCGGTACT 786
Query 764 CCTCATGGCTGGGATATTCTCTTCTACATCTTCCAATTCATCCGTGTTGTTCTTCTCTTC 823
||||||||||||||| || | |||||||| ||||| || || ||||||||||||||||||
Sbjct 787 CCTCATGGCTGGGATGTTTTATTCTACATTTTCCAGTTTATTCGTGTTGTTCTTCTCTTC 846
Query 824 ACCGTGATCATCTTGATCGGAACTGGCTGGTCGTTTTTGAAACCTTTCTTGCAGGAGAAA 883
|| ||||| | ||||| |||||||||||||| || ||||| || ||||| || ||||||
Sbjct 847 ACTGTGATTGTGTTGATTGGAACTGGCTGGTCCTTCTTGAAGCCATTCTTACAAGAGAAA 906
Query 884 GAGAAGAATGTGTTGATCATTG-TGATCCCACTTCAGGTAT-TAGCCAACATTGCTTCCA 941
||||||||||||||||| ||| || | ||||||||||| | | || |||||||||||||
Sbjct 907 GAGAAGAATGTGTTGATGGTTGTTG-TTCCACTTCAGGT-TCTCGCTAACATTGCTTCCA 964
Query 942 TTGTCATTGGTGAAACTGGACCTTTTATCAAAGATTGGGTTACTTGGAACCA-AGTGTTT 1000
|||| ||||| || ||||||||||||||||||||||||||||||||||| || | | ||
Sbjct 965 TTGTGATTGGAGAGACTGGACCTTTTATCAAAGATTGGGTTACTTGGAATCAGA-TATTC 1023
Query 1001 TTGCTTGTGGATATCA-TCTGTTGCTGTGCTAT-TATCTTCCCCATTGTCTGGTCTATTC 1058
|||||||| ||||| | | || || ||||| || | | ||||| ||||| ||||| || |
Sbjct 1024 TTGCTTGTAGATAT-AGTTTGCTGTTGTGCGATCT-TATTCCCTATTGTTTGGTCGATAC 1081
Query 1059 GATC-CTTGAGAGAGACCTCGAAAACCGATGGTAAAGCTGCGAGGAACTTGTCGAAGCTC 1117
| || || |||||||| |||||||||||||| ||||| || ||||||||| |||| |
Sbjct 1082 GTTCGCTA-AGAGAGACTTCGAAAACCGATGGGAAAGCGGCTAGGAACTTGGCGAAATTG 1140
Query 1118 ACGT-TGTTTAGACAGTTCTACATTGTTGTCATCGGATATCTT-TACTTCACGAGAATCG 1175
|| | |||||||||| |||||||||||||||||||| ||| || ||||| ||||| || |
Sbjct 1141 AC-TCTGTTTAGACAATTCTACATTGTTGTCATCGGGTAT-TTGTACTTTACGAGGATTG 1198
Query 1176 TGGTGTTTGCGCTTAAAACCATTGCGGCTTATAAGTACCAGTGGGTGAGTTTTGCAGCGG 1235
| ||||||||||| || || || || ||||||||||| | ||||||||| |||||| |
Sbjct 1199 TAGTGTTTGCGCTGAAGACAATCGCAGCTTATAAGTATCGGTGGGTGAGCAATGCAGCTG 1258
Query 1236 AGGAGATTGTGAGTTTGGTGTTCTATGTGATCATGTT-TCATATGTTTAGGCCTGAGGAG 1294
||||||||| ||| ||| ||| || || | ||||| | ||||||| ||||||| |||
Sbjct 1259 AGGAGATTGCAAGTCTGGCGTTTTACATGTTGATGTTCT-ATATGTTCAGGCCTGTCGAG 1317
Query 1295 AAGAATGAGTACTTTGCTGTTGAT-GATGATGAAGAAGAAG 1334
||||||||||| ||| | ||| || ||||| ||||||||||
Sbjct 1318 AAGAATGAGTA-TTT-C-GTT-ATAGATGAAGAAGAAGAAG 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78614053470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5