BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488737
Length=839
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18540.1 | Symbols: | unknown protein; Has 2026 Blast hits ... 1273 0.0
> AT5G18540.1 | Symbols: | unknown protein; Has 2026 Blast hits
to 792 proteins in 129 species: Archae - 2; Bacteria - 12;
Metazoa - 1126; Fungi - 267; Plants - 292; Viruses - 0; Other
Eukaryotes - 327 (source: NCBI BLink). | chr5:6153869-6156166
FORWARD LENGTH=851
Length=851
Score = 1273 bits (689), Expect = 0.0
Identities = 800/852 (94%), Gaps = 14/852 (2%)
Strand=Plus/Plus
Query 1 AAGACGGCCGTCAAAGTTTCGGTGACGGAGAATA-T-TTGCCGACGGGAATTGCAATGGG 58
|||||||||||||||||||||||||||||||||| | |||||||||| ||||| ||||||
Sbjct 1 AAGACGGCCGTCAAAGTTTCGGTGACGGAGAATATTGTTGCCGACGGAAATTGGAATGGG 60
Query 59 AGGAGGAGCTATTGACGAAGAGCTGACAGAAGATGAGAAGAGAGCTCTCAGAGGAAGCAA 118
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGGAGGAGCGATTGACGAGGAGCTGACAGAAGATGAGAAGAGAGCTCTCAGAGGAAGCAA 120
Query 119 ATTCGCTCCTCTTACTTCTCTTCCTTCGTCTTCTCGCTCTAAGCCTCCCAGATTGGCTCA 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTCGCTCCTCTTACTTCTCTTCCTTCGTCTTCTCGCTCTAAGCCTCCCAGATTGGCTCA 180
Query 179 TCCAGGTGGACCCTTGAAGACGAATAAAGCGGCGGCTTTAGCCAAGTTTCTAGAGAGGAA 238
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCAGGTGGACCATTGAAGACGAATAAAGCGGCGGCTTTAGCCAAGTTTCTAGAGAGGAA 240
Query 239 GCTGCAAGATCCTAACGGGTTAGATTCCATTGATCCAGCTCTCGTCGAATTGGCCGTCAA 298
||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 241 GCTGCAAGATCCTAATGGGTTAGCTTCCATTGATCCAGCTCTTGTCGAATTGGCCGTCAA 300
Query 299 AAACGCCAAAGACACTGTTATTTCGAGTGGGGCTTCGAGTTCAGGAAGGAGAATCCAACA 358
||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 301 AAACGCCAAAGACACTGTTATTTCGAGTGGGGCCTCGAGTTCAGGAAGAAGAATTCAACA 360
Query 359 CGTTGCTTCATTCGAAGATGTCGAGGTATCTTCTGACGACGATAAGATAGAGAACACTAA 418
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 CGTTGCTTCATTCGAAGATGTCGAGGTATCTTCTGATGACGATAAGATAGAGAACACTAA 420
Query 419 GCATAACaaaaagaaaaagaagaaaaacgcaaagaagaaaaaagatgagaaaaagaagaa 478
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 GCTTAACAAAAAGAAAAAGAAGAAAAACGCAAAGAAGAAAAAAGAAGAGAAAAAGAAGAA 480
Query 479 gaaaaacaaaaagCATAAGCAACAGATCACGGTCGATGAAGATGCCAAGTTAAAGAGACC 538
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 481 GAAAAACAAAAAGCATAAGCAACAGATCACTGTCGATGAAGATGCCAAGTTAAAGAGACC 540
Query 539 CAATAAGAAGTTGAAGCTTTAGTTTCATTTTTCTGGCTATACATTACTGGTCACATATTT 598
|||||||||||||||||||||||||| ||||| | |||| ||||||||||| ||||||||
Sbjct 541 CAATAAGAAGTTGAAGCTTTAGTTTCCTTTTTTTCGCTACACATTACTGGTTACATATTT 600
Query 599 GATGAAGACGGTTTAACAGGGACTTTCGAAGAACAAACTCAATCACTGGTAT----CTG- 653
|||||||| |||||| | ||| |||| |||||||||||||||||||| ||| |||
Sbjct 601 GATGAAGATGGTTTAGCTGGGTCTTTAGAAGAACAAACTCAATCACTCTTATGTGTCTGA 660
Query 654 ---T--CTGATCCAAAGAATCTGTTAGTCCAATGGTTAGCTAAAGATTAGCATGATAATC 708
| |||||||||||||||||||||||| ||||||||| ||||||||||||||| |||
Sbjct 661 AAATGTCTGATCCAAAGAATCTGTTAGTCCGATGGTTAGCCAAAGATTAGCATGATGATC 720
Query 709 TTTCTTCTTTATGTCAG-TTAGATTTCTCCGTCTTTATTCGGTTAAATCTGAGACTGGAG 767
||||||||| |||| || ||||||||||||| || |||| ||||||||||||||| ||||
Sbjct 721 TTTCTTCTTAATGT-AGGTTAGATTTCTCCGGCTCTATTTGGTTAAATCTGAGACCGGAG 779
Query 768 TTGATTGTGGTTTTAGAACGAATAGCTTCATGGATCTGAAATTTGTATTTTGGTTAAAGA 827
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTGATTGTAATTTTAGAACGAATAGCTTCATGGATCTGAAATTTGTATTTTGGTTAAAGA 839
Query 828 TCAAATGCTTGT 839
|||||||||||
Sbjct 840 GCAAATGCTTGT 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40890595658
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5