BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488738
Length=2152
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18550.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 3096 0.0
> AT5G18550.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr5:6160178-6163130 FORWARD LENGTH=2136
Length=2136
Score = 3096 bits (1676), Expect = 0.0
Identities = 2025/2181 (93%), Gaps = 74/2181 (3%)
Strand=Plus/Plus
Query 1 GAAAGATCAAAACTTCCCCATCCCTCTTCCAAAATCCAT-CCCTCaaaaaaaataaaaaa 59
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1 GAAAGATCAAAACTTCCCCATCCCTCTTCCAAAATCCATCCCCTCAAAAAAAAT----AA 56
Query 60 aaatac-tcctttcgaaatttcgc----aaaaaaaatcgaagccg-------a-a--a-a 103
|||||| ||||||||||||||||| ||||||||||||||||| | | | |
Sbjct 57 AAATACTTCCTTTCGAAATTTCGCTAAAAAAAAAAATCGAAGCCGAAAACAAATAGTAGA 116
Query 104 a-aaa-aaaaaaGTTTCAGCTTTAAGGAAAGAGATCAAGCGACTGAGAGTGGTGTGGAGA 161
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AGAAAGAAAAAAGTTTCAGCTTTAAGGAAAGAGATCAAGCGACTGAGAGTGGTGTGGAGA 176
Query 162 CAGAACCAACCACGATCTGTGGttttttttttttt-t-C-TTCCTTTCTCCAATCTCAGG 218
||||||||||||||||||||||||||||||||||| | | || |||||||||||||||
Sbjct 177 CAGAACCAACCACGATCTGTGGTTTTTTTTTTTTTGTCCTTTTTTTTCTCCAATCTCAGA 236
Query 219 AAGaaaaaaaGTTTCTTCCCGACACTCCCATTTGATCGGAGAGC-TCGACATTGGTGGGT 277
|| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 237 AATAAAAAAAGTTTCTTCCCGACACTCCCATTTGATCGGAGGGCTTCGACATTGGTGGGC 296
Query 278 TCTGTTTCGCGGCTCCGGCTAAAGGTTAGGGTAAAACAAAAATGGAGCGGTACGGTGGCG 337
|||||||||| |||||||||||| ||||| ||||| |||||||||| |||||||||||||
Sbjct 297 TCTGTTTCGCCGCTCCGGCTAAAAGTTAGTGTAAAGCAAAAATGGAACGGTACGGTGGCG 356
Query 338 CCGGAGAAGATGAGTCGCGGTCGGATCCATCACATGAATGGTCCGCTCCAGGAACCGAAA 397
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 357 CCGGAGAAGATGAGTCACGGTCGGATCCATCACATGAATGGTCCGCTCAAGGAACCGAAA 416
Query 398 CCGGTATCGAAGCTTCGATGTGGCGGTTAGGGTTGCGAGGCGCTGGAGGTGGAGGTGAAT 457
| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 417 CTGGTATCGAAGCTTCGATGTGGCGGTTAGGGTTGCGAGGTGGTGGAGGTGGAGGTGAAA 476
Query 458 CGTTCCCGGAGCGACCCGATGAACCCGATTGTATCTATTTTTTACGAACCGGTGTTTGCG 517
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 477 CGTTCCCGGAGCGACCCGATGAACCCGATTGTATCTATTATTTACGAACCGGTGTTTGCG 536
Query 518 GGTACGGGTCTAGATGTCGGTTCAATCACCCACGAAACCGTGCTCCGGTCTTGGGAGGTC 577
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GGTACGGGTCTCGATGTCGGTTCAATCACCCACGAAACCGTGCTCCGGTCTTGGGAGGTC 596
Query 578 TCAGAACAGAAGCTGGAGAATTCCCTGAGAGAATGGGACAGCCTGTGTGTCAGCATTTTA 637
||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
Sbjct 597 TCAGAACAGAAGCTGGAGAGTTCCCTGAGAGAATGGGACAACCTGTTTGTCAGCATTTCA 656
Query 638 TGCGAACAGGAACATGTAAATTCGGTGCTTCTTGTAAGTATCACCATCCTAGACAaggag 697
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||
Sbjct 657 TGCGAACAGGAACATGTAAATTTGGTGCTTCTTGTAAGTATCACCATCCTAGAC-A--AG 713
Query 698 gaggaggaggagATTCTGTTACTCCTGTCTCACTAAATTACATGGGATTTCCATTACGCC 757
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 714 GAGGAGGAGGAGATTCTGTTACTCCTGTCTCCCTAAATTACATGGGATTCCCATTACGCC 773
Query 758 CGGGGGAGAAAGAATGCTCCTATTTCATGAGAACCGGTCAGTGTAAATTCGGTTCCACCT 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CGGGGGAGAAAGAATGCTCCTATTTCATGAGAACCGGTCAGTGTAAATTCGGTTCCACCT 833
Query 818 GTCGATATCACCATCCCGTCCCTCCTGGTGTACAAGCTCCA--TC-GCAGCAGCAACAAC 874
|||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||
Sbjct 834 GTCGATATCACCATCCAGTCCCTCCTGGTGTACAAGCTCCATCTCAGCAGCAGCAACAAC 893
Query 875 AGTTATCCGCTGGTCCAACTATGTATCAATCGCTTCAGTCTCAACCCGTTCCTTCATCGC 934
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 894 AGTTATCCGCTGGTCCAACTATGTATCCATCGCTTCAGTCTCAAACCGTTCCTTCATCGC 953
Query 935 AGCAATACGGAGTAGTTCTAGCAAGACCTCAGCTTTTACCAGGCTCCTATGTTCAAAGCC 994
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 954 AGCAATACGGAGTAGTTCTAGCAAGACCTCAGCTCTTACCAGGCTCATATGTTCAAAGCC 1013
Query 995 CTTATGGTTACGGTCAAATGGTTCTTCCTCCCGGTATGGTTCCATACTCGGGCTGGAACC 1054
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1014 CTTATGGTTACGGTCAAATGGTTCTTCCTCCTGGTATGGTTCCATACTCGGGCTGGAACC 1073
Query 1055 CTTACCAGGCTTCTGTAAGTGCCATACCTTCTCCTGGGACTCAACCGTCAATTGGAACCA 1114
|||||||||||||||||||||| || ||||| |||||||||||||||||||| |||||||
Sbjct 1074 CTTACCAGGCTTCTGTAAGTGCGATGCCTTCCCCTGGGACTCAACCGTCAATGGGAACCA 1133
Query 1115 GCTCTGTTTATGGAATTACGCCGTTATCTCCTTCAGCGCCTGCCTATCAATCCGGTCCAT 1174
|||||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1134 GCTCTGTTTATGGAATCACTCCGTTATCTCCCTCAGCGCCTGCTTATCAATCCGGTCCAT 1193
Query 1175 CTTCTACGGGTGTTACAAATAAGGAACAAACTTTTCCTCAGCGACCTGAACAACCCGAAT 1234
||||||| |||||| |||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1194 CTTCTACCGGTGTTTCAAATAAGGAACAAACTTTTCCTCAGCGACCTGAACAACCTGAGT 1253
Query 1235 GTCAATACTTTATGAGAACCGGAGATTGTAAATTCGGATCCTCATGCAGATTCCATCATC 1294
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1254 GTCAATACTTTATGAGAACCGGAGATTGTAAATTCGGAACCTCTTGCAGATTCCATCATC 1313
Query 1295 CTATGGAAGCAGCATCGCCCGAGGCAAGTACCCTCAGCCACATTGGCCTCCCACTTCGTC 1354
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 CTATGGAAGCAGCATCGCCAGAGGCAAGTACCCTCAGCCACATTGGCCTCCCACTTCGTC 1373
Query 1355 CCGGCGCAGTGCCATGCACTCACTTTGCGCAACACGGTATTTGCAAGTTTGGGCCTGCCT 1414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 CCGGCGCAGTGCCATGCACTCACTTTGCGCAACACGGTATTTGCAAGTTTGGGCCTGCCT 1433
Query 1415 GCAAATTTGACCACTCCTTGGGCTCTTCTTCACTAAGCTACAGCCCATCCCCCTCTTCTC 1474
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1434 GCAAATTTGACCACTCCTTGGGCTCTTCTTCACTAAGCTACAGCCCATCCCCTTCTTCAC 1493
Query 1475 TCACGGACATGCCCGTCGCACCTTACCCTCTCGAGTCCTCCTCGCTCGGCACATTAGCTC 1534
|||||||||||||||||||||||||||| ||| | || |||||||||||||||||
Sbjct 1494 TCACGGACATGCCCGTCGCACCTTACCC-CTC----C-TC---GCTCGGCACATTAGCTC 1544
Query 1535 catcatcatcatcatcctcatcTGACCAACGCACTGAGCTTCTCTCTTCCAGCTCTATTG 1594
||||||| | ||||| | |||||| ||||||||||| ||||||||||||||||||
Sbjct 1545 CATCATC--C-TCATC-T-----GACCAATGCACTGAGCTTATCTCTTCCAGCTCTATTG 1595
Query 1595 AACCTATAACCACAGCAACAAGTGGCTCAGAAACTGTGGCTGCTGGAGTCTCTTCTTCTT 1654
|||||||||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1596 AACCTATAACAACAACAACTGGTGGCTCAGAAACTGTGGCTGCTGGAGTCTCTTCT---- 1651
Query 1655 CTTCTATGACCAGCGGTGTTAGCCATCCCGAGCCTGCTGAGACCGATAAAGGTGACTCAG 1714
|||||||| | ||| |||||||||||||||||||||||| |||||||||| ||||
Sbjct 1652 -----ATGACCAGTGATGTGAGCCATCCCGAGCCTGCTGAGACCAATAAAGGTGATTCAG 1706
Query 1715 CTAGCATTGAGGCTAAGACTTCAAGTTAAAGAGACAAATCTCAAAGGAGGGAAGAGAatc 1774
|||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1707 CTAGCAATGAGGCTAAGACTTCAAGTTAAAGAGACAAATCTTAAAGGAGAGAAGAGAATC 1766
Query 1775 tctctctaatcttcttagattattcatctctcttattctctctatctc-c-cttcttctt 1832
|||||||| ||||||||||||||| |||||||||||||||||||| || | |||||||||
Sbjct 1767 TCTCTCTATTCTTCTTAGATTATT-ATCTCTCTTATTCTCTCTATATCTCTCTTCTTCTT 1825
Query 1833 TTCATCAAACTTTCATGAACTCAGGAACATAAAAAGGATATTTTTTGGGCGGAGAGACAG 1892
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1826 TTCATCAAACTTTCATGAACTCAGGAACATAAAAAGGATATTTTTTGGGTGGAGAGACAA 1885
Query 1893 CAATAGGTAA-CAACGCAGAGAGATAGACAAAAGGAGctctctctactcctctgtgttat 1951
||| || || ||| |||||||||||||| ||||||| ||||||||||| ||| ||| ||
Sbjct 1886 CAACAGA-AAGCAAAGCAGAGAGATAGACGAAAGGAGTTCTCTCTACTCTTCTATGTCAT 1944
Query 1952 gtctctcctcttaggtctctctTACCATGTTCATATTATTCCTTCATACGGCCATCTCTC 2011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1945 GTCTCTCCTCTTAGGTCTCTCTTACCATGTTCATATTATTCCTTCATACGGCCATCTCTC 2004
Query 2012 TGTCTTTTGTTGtttttttcttttctttttGGAAACGTTGATTAATAAAATGGCCTTATA 2071
||||||||||| || |||| | ||||||||||||| ||||||||||| ||||||||||
Sbjct 2005 TGTCTTTTGTTCTTCTTTT-T---CTTTTTGGAAACGATGATTAATAAA-TGGCCTTATA 2059
Query 2072 TATATTCACAACAATCCCCTGTTTATTTTTCAAAAGTTTTATGGAATATTGGAATTAACT 2131
||| | ||||| |||||||||||||||||| |||| ||| ||||||||| ||||||||||
Sbjct 2060 TAT-T-CACAAAAATCCCCTGTTTATTTTT-AAAACTTT-ATGGAATATGGGAATTAACT 2115
Query 2132 AATTAAGAGTCCAATTTTTAT 2152
|||||| ||||||||||||||
Sbjct 2116 AATTAATAGTCCAATTTTTAT 2136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106726358670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5