BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488739
Length=1388
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18560.1 | Symbols: PUCHI | Integrase-type DNA-binding super... 2139 0.0
> AT5G18560.1 | Symbols: PUCHI | Integrase-type DNA-binding superfamily
protein | chr5:6164587-6165991 REVERSE LENGTH=1405
Length=1405
Score = 2139 bits (1158), Expect = 0.0
Identities = 1322/1399 (94%), Gaps = 20/1399 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaaCCTTACTCATCATAACACATCTTTAACCAAAACCCTAAAAGAAACCTCCTTT 60
|||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 3 AAAAAAAAACTTACTCATCATAAGATATCTTTAACCAAAACCCTAAAAGAAACCTCCTTT 62
Query 61 CGAAAAAACCATTTCTTCATCATCATGTCAACCTCCAAAACCCTAGATCATAATAAACCA 120
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 63 CAAAAAAACCATTTCTTCATCATCATGTCAACCTCCAAAACCCTAGACCATAATAAACCA 122
Query 121 TTTGAGACATCCCAAACTCAAATGGGTTTTGCTCTGATccaccaaaacacatccaccaac 180
||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 123 TTTGAAACATCCCAAACGCAAATGGGTTTTGCTCTGATCCACCAAAACACATCCGCCAAC 182
Query 181 acaaccaccaccaccacaacGGGAGAGAGAAGAGGCCGGAGATCAAAGCAAGCGGAGCCA 240
|||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||
Sbjct 183 ACAACCACCACCACCACAACCGGCGAGAGACGAGGCCGGAGATCAAAGCAAGCGGAGCCA 242
Query 241 GGCAGGTTCCTAGGAGTCCGGAGACGTCCATGGGGTCGTTACGCAGCCGAGATAAGAGAT 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GGGAGGTTCCTAGGAGTCCGGAGACGTCCATGGGGTCGTTACGCAGCCGAGATAAGAGAT 302
Query 301 CCAACCACCAAAGAACGTCACTGGCTCGGCACTTTCGACACAGCTCACGAAGCTGCTCTT 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 303 CCAACCACCAAAGAACGTCACTGGCTAGGCACTTTCGACACAGCTCACGAAGCTGCTCTT 362
Query 361 GCCTACGATAGAGCTGCTCTTTCAATGAGAGGCACTCAAGCTCGAACCAACTTCGTCTAC 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 363 GCCTACGATAGAGCTGCTCTTTCAATGAGAGGTACTCAAGCTCGAACCAACTTCGTCTAC 422
Query 421 ACTCCAACTGATGTTCACACCATCCTTACAAACCCTAATCTTCACTCTCTCATTGTCTCT 480
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 423 ACTCCAACTGATGTCCACACCATCCTCACAAACCCTAATCTCCACTCTCTCATTGTCTCT 482
Query 481 CCTTACAATAATAACCAATCTCTCTTACCAAACTCTTCTCCACAGTTTGTCATCGATCAT 540
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 483 CCTTACAATAACAACCAATCTTTCTTACCAAACTCTTCTCCACAGTTTGTCATCGATCAT 542
Query 541 CATCCTCATTATCAAAACTATCATCAACCACAACAACCTAAACACACTCTCCCCCAAACT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 CATCCTCATTATCAAAACTATCATCAACCACAACAACCTAAACACACTCTCCCCCAAACT 602
Query 601 GTCTTACCTGCGGCTTCTTTCAAAACGCCAGTTCGTCATCAAAGCGCGGATATTCAATCG 660
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 603 GTCTTACCCGCGGCTTCTTTCAAAACGCCAGTTCGTCATCAAAGCGTGGATATTCAAGCG 662
Query 661 TTTGGTAATAGTCCTCAAAACTCATCTTCTAACGGCTCGTTATCTTCTTCACTAGACGAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TTTGGTAATAGTCCTCAAAACTCATCTTCTAACGGCTCGTTATCTTCTTCACTAGACGAA 722
Query 721 GAAAACAACTTCTTCTTCTCGTTAACAAGCGAAGAACATAATAA--C-AA---C---TCG 771
|||||||||||||||||||| ||||||||||||||||||||||| | || | |||
Sbjct 723 GAAAACAACTTCTTCTTCTCTTTAACAAGCGAAGAACATAATAAGTCCAATAACAACTCG 782
Query 772 GGTTACTTGGACTGCATTGTTCCAAACCACTGCCTTAAACCACCTCCGGATGCCGCCACC 831
||||||||||| |||||||| ||||||||||||||||||||||||||||| ||| |||||
Sbjct 783 GGTTACTTGGATTGCATTGTCCCAAACCACTGCCTTAAACCACCTCCGGAGGCCACCACC 842
Query 832 ACCCAAAATCTAGCCGGAGTTAGTTTCACAACTCCGGCAGCAAGCAAAGCCTCTGAATCA 891
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||
Sbjct 843 ACCCAAAATCAAGCCGGAGCTAGTTTCACAACTCCGGTAGCAAGCAAAGCCTCTGAACCA 902
Query 892 TACGGAGGGTGTAGTAATAGCTACTTCGAAGATGGTGAGATGATGATGAATCA-TCATCA 950
|| ||||||| |||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 903 TATGGAGGGTTTAGTAATAGCTACTTCGAAGATGGTGAGATGATGATGA-TGAATCATCA 961
Query 951 TGAGTTTGGTTCGTGTGATCTCTCTGCCATGATCACTAACTATGGTGCTGCTGCTGCTTC 1010
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 962 TGAGTTTGGTTCGTGTGATCTCTCTGCCATGATCACGAACTATGGTGCTGCTGCCGCTTC 1021
Query 1011 AATGTCGATGGACGATTACGCGATAATGGAGCCGCAAGATTTATCTTCTCCTTCTCTCGC 1070
|||||| ||||| ||||||| ||| |||||||||||||||||||||||| ||||| ||||
Sbjct 1022 AATGTCAATGGAAGATTACGGGATGATGGAGCCGCAAGATTTATCTTCTTCTTCTATCGC 1081
Query 1071 TGCTTTTGGAGATGTTGTTGCAGACACTACAGGCTTCTACTCAGTCTTTTAGAatattct 1130
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1082 TGCTTTTGGAGATGTCGTTGCAGACACTACAGGCTTCTACTCAGTCTTTTAGAACATTCT 1141
Query 1131 atattacatttctgttttatatatatccaataatattattagtatttacgttattCGATG 1190
|||||| || | | |||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1142 ATATTATATATGT-TTTT-TATATATGCAATAATATTATTAGTATTTACGTTATTCGATG 1199
Query 1191 GTCGTTTGATTTTTGTTGTTAGCTATATGTTACCGACTTTATTATTTAAATCCTGCTTAT 1250
||||||||||| ||||||||| |||||||||| |||||||||||| ||||||||||||||
Sbjct 1200 GTCGTTTGATTGTTGTTGTTAACTATATGTTATCGACTTTATTATATAAATCCTGCTTAT 1259
Query 1251 TTGTTTCATGCACCATAAGGTTACCTTACCATGAAgttttgatttgtttgttttttcttt 1310
| |||||||||| ||||||||||||||||| |||||||||||||||||| ||| ||||
Sbjct 1260 T-GTTTCATGCATCATAAGGTTACCTTACCTTGAAGTTTTGATTTGTTT-TTT---CTTT 1314
Query 1311 taatttgtattatggttttgATTAGCAAAA-GGGATGATGCGAGTTGTATTAAAGACCAC 1369
||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 1315 -AATTTGTATTATGGTTTTGATTAGCAAAAAGGGATAATCCGAGTTGTATTAAAGACCAC 1373
Query 1370 TTTTTGTCCACGCTACTTC 1388
|||||||||| ||||||||
Sbjct 1374 TTTTTGTCCATGCTACTTC 1392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68373142290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5