BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488743
Length=2588
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18590.1 | Symbols: | Galactose oxidase/kelch repeat superf... 3461 0.0
> AT5G18590.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:6178354-6182761 REVERSE LENGTH=2719
Length=2719
Score = 3461 bits (1874), Expect = 0.0
Identities = 2095/2201 (95%), Gaps = 17/2201 (1%)
Strand=Plus/Plus
Query 365 AGGGTTTATATTTCTTCTGGGGATTTCTGAGAAATTGGAAGAAAATGTTCAGCTTTTCTA 424
||| ||||| ||| ||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 391 AGGATTTAT-TTT-TTCTGGGGATTTCTGAG--ATTGGAAGAAAATGTTCAGCTTTTCAA 446
Query 425 AGAGGCGCATGAGACTTGGCAGGGTTAAGAAGGTACAGCTCTCGGATTCTGTTCAAGGAT 484
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 447 AGAGGCGCATGAGACTTGGCAGAGTTAAGAAGGTACAGCTCTCGGATTCTGTTCAAGGAT 506
Query 485 ATAAGAGTCCTTTGCGAGTAACCAAACTG-GCTGATAACTCTAGTAATGAAGCTGCCT-T 542
||||||||||||| ||||| ||||||| | ||||||| ||||||||||||||||| || |
Sbjct 507 ATAAGAGTCCTTTACGAGTGACCAAAC-GCGCTGATAGCTCTAGTAATGAAGCTG-CTGT 564
Query 543 GGCTGCAACTAGTTATTCTGATGAATTTGATTTCCAGCCTTCATCGGGGAATTCTGAAAA 602
|||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||
Sbjct 565 TGCTGCAACTAGTTATTCTGATGAACTTGATTTCCAGCCTTCATCAGGGAATTCCGAAAA 624
Query 603 TTGGATGGTGTTATCGGTTGGTGGGGAAAAACCCGCTCCACGCTTTAATCATGCGGCCGC 662
||||||||||||||||||| ||| ||||||||||||||||||||||||||||| || ||
Sbjct 625 TTGGATGGTGTTATCGGTTAATGGCGAAAAACCCGCTCCACGCTTTAATCATGCAGCGGC 684
Query 663 GGCTATTGGGAACAAAATGATAGTAGTTGGTGGAGAATCTGGTAGTGGCTTGTTGGATGA 722
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 685 GACTATTGGGAACAAAATGATAGTAGTTGGTGGAGAGTCTGGTAGTGGCTTGTTGGATGA 744
Query 723 TGTACAGGTGCTTAACTTTGATTCATGTACATGGTCCACCGCGTCTTCAAAAGTTTACTT 782
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 745 TGTACAGGTGCTTAACTTTGATTCATGTACATGGTCCACCGCATCTTCAAAAGTTTACTT 804
Query 783 ATCGCCGAGTAGTCTTCCTCTCATGATCCCTGCTTGGAAAGGCCATTGCTTGGTCTCTTG 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 ATCGCCGAGTAGTCTTCCTCTCATGATCCCTGCTTGGAAAGGCCATTGCTTGGTCTCTTG 864
Query 843 GGGTAAAAAAGTGCTATTGGTGGGTGGAAAAACAGATCCTTCCAGTGATAGAGTTTCAGT 902
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 865 GGGTAAAAAAGTGCTGTTGGTGGGTGGAAAAACAGATCCTAGCAGTGATAGAGTTTCAGT 924
Query 903 TTGGGCATTTGATACTGATTCGGAATGCTGGTCGCTTATGGATGCAAAAGGAGACGTACC 962
|||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 925 GTGGGCATTTGATACTGATTCGGAATGCTGGTCACTAATGGATGCAAAAGGAGACTTACC 984
Query 963 GGTCAGTCGCAACGGTCACACGGTGGTGAGGGCCAGTTCGGTATTGATACTTTTCGGCGG 1022
||||||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||| ||
Sbjct 985 GGTCAGTCGCAGCGGTCACACAGTGGTGAGGGCTAGTTCGGTATTGATACTATTCGGTGG 1044
Query 1023 TGAAGACTCTAAGAAGAGGAAACTAAACGATCTTCATATGTTTGATCTCAAATCATCCAC 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 TGAAGACTCTAAGAAGAGGAAACTAAACGATCTTCATATGTTTGATCTCAAATCATCCAC 1104
Query 1083 ATGGCTTCCTCTTAATTGCACAGGAACACGGCCGTGTGCAAGATCACATCATGCAGCCAC 1142
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1105 ATGGCTTCCTCTTAATTGCACAGGAACACGGCCGTGTGCAAGGTCACATCATGTAGCCAC 1164
Query 1143 ACTATTCGACGACAAAATTCTCTTTGTGTTTGGAGGTTCGGGCAAGAACAAAACACTTAA 1202
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1165 GTTATTCGACGACAAAATTCTGTTTGTGTTTGGAGGTTCGGGCAAGAACAAAACACTAAA 1224
Query 1203 TGACTTATACTCACTTGACTTTGAAACGATGGTATGGTCAAGAATAAAAATAAGAGGATT 1262
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1225 TGACTTATACTCACTCGACTTTGAAACGATGGTATGGTCAAGAATAAAGATAAGAGGATT 1284
Query 1263 TCACCCGTCTCCAAGAGCGGGTAGTTGTGGAGTTCTTTGCGGTACTAAATGGTATATAAC 1322
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 TCACCCATCACCAAGAGCGGGTAGTTGTGGAGTTCTTTGCGGTACTAAATGGTATATAAC 1344
Query 1323 TGGAGGAGGAAGCAGAAAGAAGAGACATGCGGAAACATTGGTCTTCGATATCTTTAAGGT 1382
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1345 CGGAGGAGGAAGCAGAAAGAAGAGACATGCGGAAACATTGGTCTTCGATATCCTTAAGGT 1404
Query 1383 CGAGTGGTCTGTAGCAAACATCTCCTCTCAATCTTC-GATCACATCCAACAAGGGATTTA 1441
||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||
Sbjct 1405 CGAGTGGTCTGTAGCAAGCATCTCCTCTCAATCTTCTG-TCACATCCAACAAGGGATTTA 1463
Query 1442 GTCTAGTTCTTCTCCAACACAAGGATAAAGATTTCCTCGTAGCTTTTGGAGGAACaaaaa 1501
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1464 GTCTAGTTCTTCTGCAACACAAGGATAAAGATTTCCTTGTAGCTTTTGGAGGAACGAAAA 1523
Query 1502 aaGATCCTTCAAATCAGGTCGCGGCTTTTATCATTGACAAGAACAAGAGTGAATCGCCAT 1561
||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||
Sbjct 1524 AAGATCCTTCAAATCAGGTCGATGCTTTTACCATTGACAAGAACAAGAGTGAATCACCAA 1583
Query 1562 CACATCCTCAAACAACTTCCAAGAAAAACCCCGGCCGGTTACTGTTTGGAAAACGATCTT 1621
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1584 CACATCCGCAAACAACTTCCAAGAAAAACCCCGGCCGGTTACTGTTTGGAAAAAGATCTT 1643
Query 1622 CTTCCTCGGCAGTTTTAACCTCTGATGAATCGGTTAAAGCCTCTTCACAGAGGCTGATTG 1681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1644 CTTCCTCGGCAGTTTTAACCTCTGATGAATCGGTTAAAGCCTCTTCACAGAGGCTGATTG 1703
Query 1682 ATTCAGTCGCCAGACAGAAACTTGCTTTAGCCATTGAAGAACATGGTGGCTCTGGTAGAA 1741
||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1704 ATTCAGTTGCCAGACAGAAACTTGCTTCAGCCATTGAAGAGCATGGTGGCTCTGGTAGAA 1763
Query 1742 GGTCTTTATCAGAGATTGCTTTCGGTGATCAACGTAACCCATCTTCTGGAAATGTCTCTT 1801
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1764 GGTCTTTATCAGAGATTGCTTTCGGTGATCATCGTAACCCACCTTCTGGAAATGTCTCTT 1823
Query 1802 TGCGTAAACAGTTTAGCACTGAAGAGGAGTACAGAGCGGTAATTGAACCCGCAAAGTGCT 1861
||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |
Sbjct 1824 TGCGTAAACAGTTTAGCACCGAAGAGGAATACAGAGCGGTGATTGAACCCGCAAAGTGTT 1883
Query 1862 CACAAAAAGA-ACTTTCCGTGCCTCTTCCGACCGCAGATGACAATAATGGAGGAGGAGCA 1920
|| || |||| | |||||||||||| ||||||| |||||||||||| |||||||| ||
Sbjct 1884 CAGAAGAAGACA-TTTCCGTGCCTCCTCCGACCACAGATGACAATACTGGAGGAG---CA 1939
Query 1921 AAGATTACAGCAGAGAAAACACTTTCGATGGTTTCAGACCGTGAAGTCTTAAATCTCCAG 1980
|||||||||||||||||||||||||| |||||||| ||||||||| |||||| |||||||
Sbjct 1940 AAGATTACAGCAGAGAAAACACTTTCTATGGTTTCTGACCGTGAAATCTTAAGTCTCCAG 1999
Query 1981 AAGCAATGCTCTGAAACATTTCCTTTAGAAAATGTCGATGGCACCTTGGTATTCCAGGAA 2040
||||||||||||||||||| |||||||||||| || |||||| ||||| ||||||| |||
Sbjct 2000 AAGCAATGCTCTGAAACATATCCTTTAGAAAACGTTGATGGCGCCTTGATATTCCAAGAA 2059
Query 2041 ATGGATAATATCAATTTTGAAGGATCAGCGTCATCATCGAGCGTGTACCAATTCCATGAG 2100
|||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 2060 ATGGATAATATCAACTTTGCAGGATCAGCGTCCTCATCGAGCGTGTACCAATTCCATGAA 2119
Query 2101 GCGAAAATGACTGCTCTTATAAGAAGAAATGGGATTCTAGAAGGGCAGTTAGAAGCAGCA 2160
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2120 GCGAAAATGACGGCTCTTATAAGAAGAAATGGGATTCTGGAAGGGCAGTTAGAAGCAGCA 2179
Query 2161 TTGGCGGGAAGAGAGGCGGCTGAGAGGAATGTGTCGGTTGCGTTGAGGAGCAAACAAGAG 2220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2180 TTGGCGGGAAGAGAGGCGGCTGAGAGGAATGTGTCGGTTGCGTTGAGGAGCAAACAAGAG 2239
Query 2221 ACTGATAAAAAGCTT-TCTGACGCCATGAGAGATGTTGAATTGCTTAAGGAGAAGCTTAC 2279
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2240 ACTGATAAAAAG-TTATCTGACGCCATGAGAGATGTTGAATTGCTTAAGGAGAAGCTGAC 2298
Query 2280 CGGGTTAGAGCTTGCTCAAGAGGAAGCTAATAGTTTGTCAAACATGGTTCACTCCGACAA 2339
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2299 CGGGTTAGAGCTCGCTCAAGAGGAAGCTAATAGTTTGTCAAACATGGTTCACTCCGACAA 2358
Query 2340 TGTCAGGCTCGAGCATGATGTAGCGTTCCTAAAAGCTGTCCTAGACGATACACAAAAGGA 2399
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2359 TGTCAGGCTTGAGCATGATGTAGCGTTCCTCAAAGCTGTCCTAGACGATACACAAAAGGA 2418
Query 2400 GTTGCATTCAACAAGAGGAGTCCTTGCAGGAGAAAGAGCAAGAGCGTTCCAGTTGCAGGT 2459
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2419 GTTGCATTCAACAAGAGGAGTTCTTGCAGGAGAAAGAGCAAGAGCGTTCCAGTTGCAGGT 2478
Query 2460 TGAAGTGTTTCATCTGAAGCAAAGATTACAATCTCTGGAGAACAGAGCTGCTACACCCAG 2519
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2479 TGAAGTGTTTCATCTGAAGCAAAGATTACAATCTCTAGAGAACAGAGCTGCTACACCCAG 2538
Query 2520 AAAGCCTTTCCATGTCTAAACACAGACCAGAGACAACACGA 2560
|||||||||||||||||||||||||||||||||||||||||
Sbjct 2539 AAAGCCTTTCCATGTCTAAACACAGACCAGAGACAACACGA 2579
Score = 316 bits (171), Expect = 5e-85
Identities = 286/336 (85%), Gaps = 30/336 (9%)
Strand=Plus/Plus
Query 1 tctctctctctctctagtctctactctctactctcGAAC-GGCTAAAGTAAGCTCAGATC 59
||||| ||||||||| ||||||| ||||||||||||||| ||| ||||||||||||
Sbjct 76 TCTCTTTCTCTCTCT-GTCTCTAGTCTCTACTCTCGAACGGGC-----TAAGCTCAGATC 129
Query 60 ATTACAAGATTCGCTTTTTACTGTTCAAATACACGAACTTGGTCCCATTCATTAGTTATT 119
|||||||||||||| ||| ||| | | ||||||||||||||||||||||||||
Sbjct 130 ATTACAAGATTCGC--TTT--TGTGC---T----GAACTTGGTCCCATTCATTAGTTATT 178
Query 120 TGCTTAAAGACAACATTTTTATTTATATGCTTCCGTAAGCTAAATCCATCT-TCCTCC-T 177
|||||||||||||||||||||| || |||||||| ||||||||||||| ||| || |
Sbjct 179 TGCTTAAAGACAACATTTTTAT--AT--GCTTCCGTTAGCTAAATCCATCACTCCCCCCT 234
Query 178 TCAATCATTTTCCTGC---GCTGGCCCCAGA--CAGCTTGCTAGGACTCAATACGACTTC 232
|||||||||| ||||| |||||||||||| ||||||||||||| ||| |||||| ||
Sbjct 235 TCAATCATTTCCCTGCTCTGCTGGCCCCAGAAACAGCTTGCTAGGATTCACTACGACGTC 294
Query 233 GTTTAGG-TTCGTCACCAGCTGTGGATAATGGCTATTCCCTGATTTTGATTCTATTCACT 291
|||| || |||||| ||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 295 GTTTCGGGTTCGTCTCCAGCTGTGGATAATGGCTATTCTCTGAAATTGATTCTATTCACT 354
Query 292 AtttttttACTGGGAATATTATCGGCAAACCAAAAC 327
||||| |||||||| || || || ||||||||||||
Sbjct 355 ATTTTGTTACTGGGGATTTTCTCAGCAAACCAAAAC 390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128477541023
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5