BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488744
Length=604
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18600.1 | Symbols: | Thioredoxin superfamily protein | chr... 911 0.0
> AT5G18600.1 | Symbols: | Thioredoxin superfamily protein | chr5:6183258-6183954
REVERSE LENGTH=697
Length=697
Score = 911 bits (493), Expect = 0.0
Identities = 574/611 (94%), Gaps = 14/611 (2%)
Strand=Plus/Plus
Query 1 ACAAAACCCTTATTCTCCACGTAGAACCAAGAGT-TTTCTTTTCCTTAAATCTCTACaaa 59
|||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 18 ACAATACCCTTATTCTCCACGTAGAATCAAGAGTACTTCTTTTCCTTAAATCTCTACAAA 77
Query 60 aaaaaaaTCGATC--TATA--AAGAGCA-CATACATATTGATTCATAAACCTATTTAAGA 114
||||||||||||| |||| ||||| | |||| |||| |||||||| ||||||||||||
Sbjct 78 AAAAAAATCGATCTATATACTAAGAG-ATCATAAATATAGATTCATAGACCTATTTAAGA 136
Query 115 AACGACTTAAGAAGCTGTTGGATCATATATACCATATAAAATAGCTATGGATATGATAAC 174
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 137 AACGACTTAAGAAGCTGTTGGATC--ATATACCATATAAAATAGCAATGGATATGATAAC 194
Query 175 GAAGATGGTGATGGAGAGACCGGTGGTTATATACAGCAAGAGTTCTTGTTGTATGTCTCA 234
||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||
Sbjct 195 GAAGATGGTGATGGAGAGACCGGTGGTGATTTACAGCAAGAGCTCTTGCTGTATGTCTCA 254
Query 235 CACGATCAAGACTTTGCTCTGCGATTTCGGAGCAAATCCAGCGGTTTACGAGCTGGATGA 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 CACGATCAAGACTTTGCTCTGCGATTTCGGAGCAAATCCAGCGGTTTACGAGCTGGATGA 314
Query 295 GCTACCTAGAGGGAAGGATATCGAGCGGGCGTTGTTGCGGCTCGGGTGTAGCCCCGCAGT 354
| || ||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 315 GATATCTAGAGGGAGGGAGATCGAGCAGGCGTTGTTGCGGCTCGGGTGTAGCCCCGCAGT 374
Query 355 TCCGG-CGGTTTTCATCGGTGGAGAGTTGGTCGGTGGAGCCAATGAGGTCATGAGTCTAC 413
||||| || ||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 375 TCCGGGCG-TTTTCATTGGTGGAGAGTTGGTCGGTGGAGCCAACGAGGTCATGAGTCTAC 433
Query 414 ATCTTAACGGATCCTTGATTCCTATGCTTAAGCGGGCTGGTGCATTGTGGGTTTGACTTA 473
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 434 ATCTTAACGGATCCTTGATTCCCATGCTTAAGCGGGCTGGTGCATTGTGGGTTTGACTTA 493
Query 474 TTATATTTTTAACTAGTTTACTTAACACTAAGTTAAGTACGCAGAATAAAATTTTAACAC 533
| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 494 TCATGTTTTTAACTAGTTTACTTAACACTAAGTTAAGTACGCAGAATAA--TTTTAACAC 551
Query 534 ATCTATGAGCTATGGCATGGTGATATGATAAGTCCACGTCGGATCAATAATCAGTGTGTT 593
|||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 552 ATCTATGATCT-TGGCATGGTGATATGATGAGTCCACGTCGGATCAATAATCAGTGTGTT 610
Query 594 GTCtttttttt 604
|||||||||||
Sbjct 611 GTCTTTTTTTT 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29085571113
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5