BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488746
Length=3596
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | ... 5962 0.0
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 ... 3565 0.0
> AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17
| chr5:6195917-6202166 REVERSE LENGTH=3600
Length=3600
Score = 5962 bits (3228), Expect = 0.0
Identities = 3487/3609 (97%), Gaps = 30/3609 (1%)
Strand=Plus/Plus
Query 1 TTGTTGCTTTTAATTTCACTTTTGTTTATTTTCACTAACCAAAGCaaaaaaaaaaCTCAG 60
|||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||
Sbjct 1 TTGTTGCTTTTAATTTCACTTTTGTTTA-TTT-ACTAACCAAAGC--AAAAAAAACTCAG 56
Query 61 GAACCCTCGATTCGA--TCTCAGACGAAATCAGGATTCGTAGAGGCGCGTCGATGGCTAG 118
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 GAACCCTCGATTCGATCTCTCAGACGAAATCAGGATTCGTAGAGGCGCGTCGATGGCTAG 116
Query 119 AGCTTCGAAGCGGGAAGTTTCTTCAGACGAGGCTTACTCGTCGGAGGAAGAGGAGCAAGT 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AGCTTCGAAGCGGGAAGTTTCTTCAGACGAGGCTTACTCGTCGGAGGAAGAGGAGCAAGT 176
Query 179 TAACGATCAGGCCAATGTGGAAGAAGATGATGAAGAGCTCGAGGCCGTCGCTCGCTCTGC 238
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 177 TAACGATCAGGCCAATGTGGAAGAAGATGATGACGAGCTCGAGGCCGTCGCTCGCTCTGC 236
Query 239 GGGTTCTGACGAGGAAGATGTTGCGCCCGACGAAGCACCTGTCTCTGACGACGATGTTGT 298
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 237 GGGCTCTGACGAGGAAGATGTTGCGCCCGACGAAGCACCTGTCTCTGACGACGAGGTTGT 296
Query 299 CCCCGTAGAAGATGACGCTGAAGAGGACGAAGAAGACGAGGAAAAAGCTGAGATCAGCAA 358
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 297 CCCCGTAGAAGATGACGCTGAAGAGGACGAAGAAGACGAGGAGAAAGCTGAGATCAGCAA 356
Query 359 ACGTGAGAAGGCTAGACTCAAAGAAATGCAGAAGATGAAGAAGCAGAAAATTCAGCAAAT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ACGTGAGAAGGCTAGACTCAAAGAAATGCAGAAGATGAAGAAGCAGAAAATTCAGCAAAT 416
Query 419 TTTAGACTCCCAAAATGCTTCCATAGATGCAGATATGAACAATAAAGGAAAGGGGA-GAT 477
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 417 CTTAGACTCCCAAAATGCTTCCATAGATGCTGATATGAACAATAAAGGAAAGGGGAGGA- 475
Query 478 TGAAGTATCTTCTGCAGCAAACTGAGTTATTTGCACATTTTGCTAAAAGTGACCCGTCTC 537
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TAAAGTATCTTCTGCAGCAAACTGAGTTATTTGCACATTTTGCTAAAAGTGACCCGTCTC 535
Query 538 CGTCCCAGAAGAAGGGGAAAGGAAGGGGTCGCCATTCTTCCAAACTAACTGAGGAAGAGG 597
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 536 CGTCCCAGAAGAAGGGAAAAGGAAGGGGTCGCCATTCTTCCAAACTAACCGAGGAAGAGG 595
Query 598 AAGATGAAGAGTGTTTAAAAGAAGAAGAGGGTGGTACAGCTGGATCTGGAGGCACACGGT 657
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 596 AAGATGAAGAGTGTTTAAAAGAAGAAGAGGGTGGTATAGTTGGATCTGGAGGCACACGGT 655
Query 658 TGCTCACACAGCCCGCTTGTATTCAGGGAAAGTTAAGAGATTACCAATTAGCTGGTTTAA 717
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 656 TGCTCACTCAGCCCGCTTGTATTCAGGGGAAGTTAAGAGATTACCAATTAGCTGGTTTAA 715
Query 718 ACTGGCTCATTCGGTTGTACGAGAATGGCATAAATGGGATTCTTGCGGATGAAATGGGTC 777
|||||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 716 ACTGGCTCATTCGGCTGTATGAGAACGGCATAAATGGGATTCTTGCAGATGAAATGGGTC 775
Query 778 TGGGGAAGACGCTTCAAACCATTTCTTTGTTGGCTTACCTGCATGAGTACAGGGGAATTA 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TGGGGAAGACGCTTCAAACCATTTCTTTGTTGGCTTACCTGCATGAGTACAGGGGAATTA 835
Query 838 ATGGCCCTCATATGGTAGTTGCTCCAAAATCAACCCTTGGTAACTGGATGAATGAAATTC 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 ATGGCCCTCATATGGTAGTTGCTCCAAAATCAACCCTTGGTAACTGGATGAATGAAATTC 895
Query 898 GCCGATTTTGTCCTGTCCTGCGTGCTGTGAAATTTCTCGGTAATCCCGAGGAAAGGAGAC 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 896 GCCGATTTTGTCCTGTCCTGCGTGCTGTGAAATTTCTCGGTAATCCCGAGGAAAGAAGAC 955
Query 958 ATATTCGTGAAGAACTGCTAGTTGCAGGGAAATTCGACATTTGTGTTACAAGCTTTGAGA 1017
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 956 ATATTCGTGAAGAACTGCTAGTTGCAGGGAAATTCGACATTTGTGTAACAAGCTTTGAGA 1015
Query 1018 TGGCTATCAAAGAGAAGACATCATTGCGCCGTTTTAGCTGGCGATATATAATCATTGATG 1077
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TGGCTATCAAAGAGAAGACAACATTGCGCCGTTTTAGCTGGCGATATATAATCATTGATG 1075
Query 1078 AAGCACATCGAATTAAAAATGAGAATTCACTCCTTTCGAAAACCATGAGACTTTTCAGCA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 AAGCACATCGAATTAAAAATGAGAATTCACTCCTTTCGAAAACCATGAGACTTTTCAGCA 1135
Query 1138 CCAACTATCGGCTTCTTATCACGGGAACCCCCCTTCAGAATAATCTCCATGAATTGTGGG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 CCAACTATCGGCTTCTTATCACGGGAACCCCCCTTCAGAATAATCTCCATGAATTGTGGG 1195
Query 1198 CCCTTCTCAATTTTCTTCTCCCTGAGGTTTTTAGTTCAGCAGAAACTTTTGACGAGTGGT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 CCCTTCTCAATTTTCTTCTCCCTGAGGTTTTTAGTTCAGCAGAAACTTTTGACGAGTGGT 1255
Query 1258 TTCAAATTTCTGGTGAAAACGACCAGCAAGAAGTTGTTCAACAACTTCACAAGGTTCTGC 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TTCAAATTTCTGGTGAAAACGACCAGCAAGAAGTTGTTCAACAACTTCACAAGGTTCTGC 1315
Query 1318 GACCATTTCTTCTTCGGAGGTTAAAATCAGATGTAGAGAAAGGCTTACCTCCAAAAAAGG 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GACCATTTCTTCTTCGGAGGTTAAAATCAGATGTAGAGAAAGGCTTACCTCCAAAAAAGG 1375
Query 1378 AGACAATACTTAAAGTTGGCATGTCTCAAATGCAAAAACAGTACTACAAGGCTTTACTGC 1437
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 AGACAATACTCAAAGTTGGCATGTCTCAAATGCAAAAACAGTACTACAAGGCTTTACTGC 1435
Query 1438 AGAAGGATCTTGAAGTGGTTAATGGTGGTGGAGAACGTAAACGTCTGTTGAACATAGCAA 1497
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1436 AGAAGGATCTTGAAGTGGTTAATGGTGGTGGAGAACGCAAACGTCTGTTGAACATAGCAA 1495
Query 1498 TGCAATTGCGGAAATGCTGCAATCACCCTTATCTCTTCCAGGGTGCGGAGCCTGGTCCCC 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TGCAATTGCGGAAATGCTGCAATCACCCTTATCTCTTCCAGGGTGCGGAGCCTGGTCCCC 1555
Query 1558 CATATACCACAGGAGATCACCTTGTAACAAATGCAGGTAAGATGGTTCTCTTAGATAAAT 1617
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1556 CATATACTACAGGAGATCACCTTGTAACAAACGCAGGTAAGATGGTTCTCTTAGATAAAT 1615
Query 1618 TGCTACCCAAGTTGAAGGATCGAGATTCAAGGGTTCTGATATTTTCTCAGATGACAAGGC 1677
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 TGCTACCTAAGTTGAAGGATCGAGATTCAAGGGTTCTGATATTTTCTCAGATGACAAGGC 1675
Query 1678 TTTTGGATATTCTTGAGGATTATCTAATGTATCGCGGTTACCAGTACTGCCGTATTGATG 1737
||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1676 TTTTGGATATTCTCGAGGATTACCTAATGTATCGTGGTTACCAGTACTGCCGTATTGATG 1735
Query 1738 GAAATACTGGTGGTGACGAACGAGATGCTTCCATAGAAGCCTACAACAAGCCAGGAAGTG 1797
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1736 GAAATACTGGTGGTGACGAACGAGATGCTTCCATAGAAGCCTATAACAAGCCAGGAAGTG 1795
Query 1798 AGAAATTTGTTTTCTTGTTATCCACTAGAGCTGGAGGACTTGGTATCAATCTTGCTACTG 1857
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 AGAAATTCGTTTTCTTGTTATCCACTAGAGCTGGAGGACTTGGTATCAATCTTGCTACTG 1855
Query 1858 CAGATGTTGTGATCCTCTATGATAGTGACTGGAACCCTCAAGTTGACTTGCAAGCTCAGG 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 CAGATGTTGTGATCCTCTATGATAGTGACTGGAACCCTCAAGTTGACTTGCAAGCTCAGG 1915
Query 1918 ATCGTGCACATAGGATTGGTCaaaaaaaaGAAGTTCAAGTATTCCGGTTCTGCACCGAGA 1977
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1916 ATCGTGCACATAGGATTGGTCAAAAAAAAGAAGTTCAAGTGTTCCGGTTCTGCACCGAGA 1975
Query 1978 ATGCTATTGAGGCGAAAGTCATTGAGAGAGCTTACAAGAAGTTGGCACTTGATGCTCTGG 2037
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 ATGCTATTGAGGCTAAAGTCATTGAGAGAGCTTACAAGAAGTTGGCACTTGATGCTCTGG 2035
Query 2038 TTATTCAGCAAGGGCGATTGGCAGAACAGAAAACTGTTAATAAGGATGAGTTGCTTCAAA 2097
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 TTATTCAGCAAGGGAGATTGGCAGAACAGAAAACTGTTAATAAGGATGAGTTGCTTCAAA 2095
Query 2098 TGGTGAGATATGGTGCTGAAATGGTGTTTAGTTCTAAAGATAGCACAATTACAGATGAGG 2157
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2096 TGGTGAGATATGGTGCTGAAATGGTGTTTAGTTCTAAAGATAGCACAATTACGGATGAGG 2155
Query 2158 ATATTGACAGAATCATTGCCAAAGGAGAAGAGGCAACGGCTGAACTTGATGCCAAGATGA 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2156 ATATTGACAGAATCATTGCCAAAGGAGAAGAGGCAACGGCTGAACTTGATGCCAAGATGA 2215
Query 2218 AGAAATTCACTGAAGATGCAATACAGTTTAAAATGGATGACAGTGCTGACTTTTATGATT 2277
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2216 AGAAATTTACTGAAGATGCAATACAGTTTAAAATGGATGACAGTGCTGACTTTTATGATT 2275
Query 2278 TTGAAGATGACAATAAGGATGAGAGCAAGGTGGATTTTAAAAAGATTGTGAGTGAAAATT 2337
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2276 TTGACGATGACAACAAGGATGAGAGCAAGGTGGATTTTAAAAAGATTGTGAGTGAAAATT 2335
Query 2338 GGAATGATCCACCAAAAAGAGAGAGAAAGCGCAACTACTCTGAAACTGAATACTTCAAGC 2397
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2336 GGAATGATCCACCAAAAAGAGAGAGAAAGCGCAACTACTCTGAAGTTGAATACTTCAAGC 2395
Query 2398 AAACACTGCGACAAGGTGCTCCAGCTAAACCTAAAGAGCCTAGAATTCCACGCATGCCCC 2457
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2396 AAACGTTGCGACAAGGTGCTCCAGCTAAACCTAAAGAGCCTAGAATTCCACGCATGCCCC 2455
Query 2458 AATTGCATGATTTTCAGTTCTTTAACATTCAGAGGTTGACTGAGCTGTACGAAAAAGAAG 2517
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 2456 AATTGCATGATTTTCAGTTCTTTAACATTCAGAGGCTGACTGAGCTGTATGAAAAAGAAG 2515
Query 2518 TGCGCTTCCTTATGCAAGCACATCAGAAAACTCAAATGAAAGACACAATTGACGTTGATG 2577
|||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2516 TGCGATACCTTATGCAAGCACATCAGAAAACTCAAATGAAAGACACAATTGAGGTTGATG 2575
Query 2578 AACCTGAAGAAATAAGCGGAAGAAAAGG-AGCTATTGCTGGAAGAGGCAAGCGAAACCAT 2636
||||||||||| | | | | || | || || | ||| || ||| ||| |
Sbjct 2576 AACCTGAAGAAGTT-G-G-A-GATCCCTTAACTGCTGAAG-AAGTGG-AAGA-AAAGGAG 2628
Query 2637 TTGACCTTACTGT--G-GGGTTTCTCAACATGGAGCAGAAGAGACTTCAATGCCTTCATT 2693
| | || ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2629 CT-A--TTGCTGGAAGAGGGTTTCTCAACATGGAGCAGAAGAGACTTCAATGCCTTCATT 2685
Query 2694 AGGGCTTGTGAGAAGTATGGCCGGAATGACATAAAGAGTATTGCCTCTGAGATGGAAGGG 2753
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2686 AGGGCTTGTGAGAAGTATGGCCGGAACGACATAAAGAGTATTGCCTCTGAGATGGAAGGG 2745
Query 2754 AAAACTGAGGAAGAGGTTGAACGATATGCTCAAGTTTTCCAAGAGCGATATAAAGAGCTG 2813
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2746 AAAACTGAGGAAGAGGTTGAACGATATGCTCAAGTTTTCCAAGTGCGATATAAAGAGCTG 2805
Query 2814 AACGATTACGACAGAATCATCAAGAATATTGAGAGGGGGGAAGCAAGAATCTCTAGGAAA 2873
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2806 AATGATTACGACAGAATCATCAAGAATATTGAGAGAGGGGAAGCAAGAATCTCTAGGAAA 2865
Query 2874 GATGAAATCATGAAAGCTATTGGGAAGAAACTGGATCGCTACAGAAACCCGTGGCTGGAA 2933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2866 GATGAAATCATGAAAGCTATTGGGAAGAAACTGGATCGCTACAGAAACCCGTGGCTGGAA 2925
Query 2934 CTGAAGATTCAGTATGGTCAGAACAAAGGGAAGCTGTACAATGAAGAGTGCGACCGTTTC 2993
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2926 CTGAAGATTCAATATGGTCAGAACAAAGGGAAGCTGTACAATGAAGAGTGCGACCGTTTC 2985
Query 2994 ATGATATGCATGGTCCATAAACTTGGGTATGGAAACTGGGATGAGCTAAAGGCAGCGTTT 3053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2986 ATGATATGCATGGTCCATAAACTTGGGTATGGAAACTGGGATGAGCTAAAGGCAGCGTTT 3045
Query 3054 CGGACATCCCCCTTGTTCAGGTTTGACTGGTTTGTAAAATCCCGCACAACTCAGGAACTT 3113
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3046 CGGACATCCCCCTTGTTTAGGTTTGACTGGTTTGTAAAATCCCGCACAACTCAGGAACTT 3105
Query 3114 GCAAGGAGATGTGACACACTAATCAGGTTGATTgagaaagagaatcaagaatatgatgag 3173
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3106 GCAAGGAGATGTGACACACTAATCAGGTTGATTGAGAAAGAGAATCAAGAATTTGATGAG 3165
Query 3174 agagagaggcaagcccgaaaagagaagaagcttgcaaagaaTGCAACGCCATCAAAGCGA 3233
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||
Sbjct 3166 AGAGAGAGGCAAGCCCGAAAAGAGAAGAAGCTTTCAAAGAGTGCAACGCCATCAAAACGA 3225
Query 3234 CCTTCTGGTAGGCAAGCAAATGAGAGCCCTTCATCTCTTCTGAAGAAACGAAAGCAGCTG 3293
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3226 CCTTCGGGTAGGCAAGCAAATGAGAGCCCTTCATCTCTTCTGAAGAAACGAAAGCAGCTG 3285
Query 3294 TCAATGGATGATTATGTGAGCTCGGGAAAGCGTAGGAAATAAGAAGGCCTGTGTTGAATC 3353
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3286 TCAATGGATGATTATGTGAGCTCGGGAAAGCGTAGGAAATAAGAAGGCTTGTGTTGAATC 3345
Query 3354 CATCACTAAGTAATCATAAAGATATATGATTA-T-CTAGGTACGATTCCAAATCGGAGAA 3411
|||||||||||||||| |||||| |||||| | | |||||| |||||| ||||||||||
Sbjct 3346 CATCACTAAGTAATCAGAAAGATTTATGATCACTTCTAGGTTTGATTCCGAATCGGAGAA 3405
Query 3412 ATAGTTAGAAAAAGCTTCTTAGTGACAAGGATCTTATATTTTGTACTCGCAAGCATTACT 3471
||||||||| ||||| ||||| ||||||||||| ||||||||||| ||||||||| |||
Sbjct 3406 TTAGTTAGAAGAAGCTCCTTAGAGACAAGGATCTAATATTTTGTACCCGCAAGCATCACT 3465
Query 3472 GCATTGTCTCCGACTTCTCTTATTT-TTCAACGTGTATTTTACT-TGAAtttt-tttATA 3528
||||||||||||||||||||||||| |||||||||||||||||| | | |||| ||| ||
Sbjct 3466 GCATTGTCTCCGACTTCTCTTATTTCTTCAACGTGTATTTTACTCT-A-TTTTGTTTGTA 3523
Query 3529 GAAATATTCACCACATTCCTAGTAGTG-GTTTTTAGTAAATCTCAAATCAACTTTTGTGG 3587
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3524 GAAATATTCACCACATTCCTAGTAGTGCGTTTTTAGTAAATCTCAAATCAACTTTTGTGG 3583
Query 3588 TCGGATTTG 3596
|||||||||
Sbjct 3584 TCGGATTTG 3592
> AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11
| chr3:1940973-1946885 FORWARD LENGTH=3452
Length=3452
Score = 3565 bits (1930), Expect = 0.0
Identities = 2795/3208 (87%), Gaps = 78/3208 (2%)
Strand=Plus/Plus
Query 140 TTCAGACGAGGCTTACTCGTC---GGAGGAAGAGGAGCAAGTTAACGATCAGGCCAATGT 196
||| || ||||||| |||||| ||||||||| |||| ||||| ||| ||||
Sbjct 111 TTCCGATGAGGCTTTCTCGTCAGAGGAGGAAGAAGAGCGGGTTAAGGAT------AATGA 164
Query 197 GGAAGAAGATGATGAAGAGCTCGAGGCCGTCGCTCGCTCTGCGGGTTCTGACGAGGAAGA 256
||||||||||| || ||||||||||| || ||||| ||| | || || ||||| || ||
Sbjct 165 AGAAGAAGATGAGGAGGAGCTCGAGGCTGTTGCTCGTTCTTCTGGCTCCGACGATGACGA 224
Query 257 TGTTG-CG-C-CCGACGAAGCACCTGTCTCTGAC-GACGATGTTGTC-CCCGTAGAAGAT 311
|| | || | |||||||| |||| ||||| ||| || || | || | ||||||||||||
Sbjct 225 AGTAGCCGCCGCCGACGAATCACCAGTCTCCGACGGA-GAGGCTG-CTCCCGTAGAAGAT 282
Query 312 GACGCTGAAGAGGACGAAGAAGACGAGGAAAAAGCTGAGATCAGCAAACGTGAGAAGGCT 371
|| | | |||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 283 GA---TTACGAGGACGAAGAAGATGAGGAAAAAGCTGAAATCAGCAAACGTGAGAAAGCC 339
Query 372 AGACTCAAAGAAATGCAGAAGATGAAGAAGCAGAAAATTC-AGCAAATTTTAGACTCCCA 430
||||| ||||| ||||||||| ||||||||||||| |||| || | || | || || ||
Sbjct 340 AGACTTAAAGAGATGCAGAAGTTGAAGAAGCAGAAGATTCAAG-AGATGCTGGAGTCGCA 398
Query 431 AAATGCTTCCATAGATGCAGATATGAACAATAAAGGAAAGGGGAGATTGAAGTATCTTCT 490
||||||||||| || || |||||||||||||| ||||| |||||| |||||||||||||
Sbjct 399 GAATGCTTCCATTGACGCGGATATGAACAATAAGGGAAAAGGGAGACTGAAGTATCTTCT 458
Query 491 GCAGCAAACTGAGTTATTTGCACATTTTGCTAAAAGTGACCCG-TCTCCGTCCCAGAAGA 549
||||||||||||||||||||| || |||||||||||||| | ||| | || |||||||
Sbjct 459 GCAGCAAACTGAGTTATTTGCCCACTTTGCTAAAAGTGA-TGGATCTTCTTCTCAGAAGA 517
Query 550 AGGGGAAAGGAAGGGGTCGCCATTCTTCCAAACTAACTGAGGAAGAGGAAGATGAAGAGT 609
||| ||||||||||| || ||| |||||||| ||||||| || |||||||| |||||||
Sbjct 518 AGGCAAAAGGAAGGGGACGTCATGCTTCCAAAATAACTGAAGAGGAGGAAGACGAAGAGT 577
Query 610 GTTTAAAAGAAGAAGAGGGTGG--TACAGCTGGATCTGGAGGCACACGGTTGCTCACACA 667
| |||| |||||||||| ||| || | ||||||||||| ||||||||| ||||||||
Sbjct 578 ATCTAAAGGAAGAAGAGGATGGCTTA-A-CTGGATCTGGAAACACACGGTTACTCACACA 635
Query 668 GCCCGCTTGTATTC-AGGGAAAGTTAAGAGATTACCAATTAGCTGGTTTAAACTGGCTCA 726
|||| ||||||||| |||| ||| | ||||||||||||||||||||||| ||||||||||
Sbjct 636 GCCCTCTTGTATTCAAGGG-AAGATGAGAGATTACCAATTAGCTGGTTTGAACTGGCTCA 694
Query 727 TTCGGT-TGTACGAGAATGGCATAAATGGGATTCTTGCGGATGAAATGGGTCTGGGGAAG 785
||| || | || ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 695 TTC-GTCTTTATGAGAATGGCATAAATGGAATTCTTGCTGATGAAATGGGTCTGGGGAAG 753
Query 786 ACGCTTCAAACCATTTCTTTGTTGGCTTACCTGCATGAGTACAGGGGAATTAATGG-CCC 844
||||||||||| |||||||||||||| || || ||||| ||||||||||| ||||| |||
Sbjct 754 ACGCTTCAAACGATTTCTTTGTTGGCATATCTTCATGAATACAGGGGAATCAATGGTCCC 813
Query 845 TCATATGGTAGTTGCTCCAAAATCAACCCTTGGTAACTGGATGAATGAAATTCGCCGATT 904
|||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||| ||
Sbjct 814 -CATATGGTGGTTGCTCCAAAATCAACACTTGGTAATTGGATGAACGAAATTCGCCGGTT 872
Query 905 TTGTCCTGTCCTGCGTGCTGTGAAATTTCTCGGTAATCCCGAGGAAAGGAGACATATTCG 964
|||||||||||| ||||||||||| || || |||||||| ||||| ||||||||||||||
Sbjct 873 TTGTCCTGTCCTACGTGCTGTGAAGTTCCTTGGTAATCCTGAGGAGAGGAGACATATTCG 932
Query 965 TGAAGAACTGCTAGTTGCAGGGAAATTCGACATTTGTGTTACAAGCTTTGAGATGGCTAT 1024
||||| ||||||||||| |||||||| || |||||||| ||||||||||||||||| ||
Sbjct 933 AGAAGACCTGCTAGTTGCTGGGAAATTTGATATTTGTGTCACAAGCTTTGAGATGGCCAT 992
Query 1025 CAAAGAGAAGACATCA-TTGCGCCGTTTTAGCTGGCGATATATAATCATTGATGAAGCAC 1083
||||||||||||| || || || || ||||||||||| ||||| |||||||||||||| |
Sbjct 993 CAAAGAGAAGACAGCACTT-CGTCGGTTTAGCTGGCGTTATATTATCATTGATGAAGCGC 1051
Query 1084 ATCGAATTAAAAATGAGAATTCACTCCTTTCGAAAACCATGAGACTTTTCAGCACCAACT 1143
||||||| || || ||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 1052 ATCGAATCAAGAACGAGAATTCACTCCTTTCTAAAACCATGAGACTTTTTAGCACCAATT 1111
Query 1144 ATCGGCTTCTTATCACGGGAACCCCCCTTCAGAATAATCTCCATGAATTGTGGGCCCTTC 1203
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1112 ATCGGCTTCTTATCACGGGGACCCCCCTTCAGAATAATCTCCATGAACTGTGGGCTCTTC 1171
Query 1204 TCAATTTTCTTCTCCCTGAGGTTTTTAGTTCAGCAGAAACTTTTGACGAGTGGTTTCAAA 1263
| ||||||||||| |||||| |||||||||||||||| |||||||| || ||||||||||
Sbjct 1172 TAAATTTTCTTCTGCCTGAGATTTTTAGTTCAGCAGAGACTTTTGATGAATGGTTTCAAA 1231
Query 1264 TTTCTGGTGAAAACGACCAGCAAGAAGTTGTTCAACAACTTCACAAGGTTCTGCGACCAT 1323
|||||||||| || ||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 1232 TTTCTGGTGAGAATGACCAGCAAGAAGTTGTGCAACAACTGCACAAGGTTCTTCGACCAT 1291
Query 1324 TTCTTCTTCGGAGGTTAAAATCAGATGTAGAGAAAGGCTTACCTCCAAAAAAGGAGACAA 1383
|||||||||| || |||| |||||||| |||||||| || || || || |||||||| |
Sbjct 1292 TTCTTCTTCGAAGACTAAAGTCAGATGTTGAGAAAGGTTTGCCACCGAAGAAGGAGACCA 1351
Query 1384 TACTTAAAGTTGGCATGTCTCAAATGCAAAAACAGTACTACAAGGCTTTACTGCAGAAGG 1443
||||||||||||| |||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 1352 TACTTAAAGTTGGTATGTCTCAGATGCAAAAGCAATACTACAAGGCTTTACTGCAGAAGG 1411
Query 1444 ATCTTGAAGTGGTTAATGGTGGTGGAGAACGTAAACGTCTGTTGAACATAGCAATGCAAT 1503
||||||||| |||||||| |||||||||||| ||||||||| | ||||| |||||||||
Sbjct 1412 ATCTTGAAGCGGTTAATGCTGGTGGAGAACGCAAACGTCTGCTAAACATTGCAATGCAAC 1471
Query 1504 TGCGGAAATGCTGCAATCACCCTTATCTCTTCCAGGGTGCGGAGCCTGGTCCCCCATATA 1563
|||| ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 1472 TGCGTAAATGCTGCAATCACCCCTATCTCTTCCAGGGTGCAGAACCTGGTCCCCCATATA 1531
Query 1564 CCACAGGAGATCACCTTGTAACAAATGCAGGTAAGATGGTTCTCTTAGATAAATTGCTAC 1623
||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 1532 CCACAGGAGATCACCTTATAACAAATGCTGGTAAGATGGTTCTCTTGGATAAATTGCTTC 1591
Query 1624 CCAAGTTGAAGGATCGAGATTCAAGGGTTCTGATATTTTCTCAGATGACAAGGCTTTTGG 1683
| |||||||| || || ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1592 CTAAGTTGAAAGAACGTGATTCAAGGGTGCTGATATTTTCTCAGATGACAAGACTTTTGG 1651
Query 1684 ATATTCTTGAGGATTATCTAATGTATCGCGGTTACCAGTACTGCCGTATTGATGGAAATA 1743
||||||||||||| ||| |||||||||| |||||| ||| ||||||||||||||||| |
Sbjct 1652 ATATTCTTGAGGACTATTTAATGTATCGTGGTTACTTGTATTGCCGTATTGATGGAAACA 1711
Query 1744 CTGGTGGTGACGAACGAGATGCTTCCATAGAAGCCTACAACAAGCCAGGAAGTGAGAAAT 1803
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1712 CTGGTGGTGACGAACGAGATGCCTCCATAGAAGCCTACAACAAGCCAGGAAGTGAGAAAT 1771
Query 1804 TTGTTTTCTTGTTATCCACTAGAGCTGGAGGACTTGGTATCAATCTTGCTACTGCAGATG 1863
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1772 TTGTTTTCTTGTTATCTACTAGAGCTGGAGGGCTTGGTATCAATCTTGCTACTGCAGATG 1831
Query 1864 TTGTGATCCTCTATGATAGTGACTGGAACCCTCAAGTTGACTTGCAAGCTCAGGATCGTG 1923
|||||||||| || |||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 1832 TTGTGATCCTTTACGATAGTGATTGGAACCCACAAGTCGACTTGCAAGCTCAGGATCGTG 1891
Query 1924 CACATAGGATTGGTCaaaaaaaaGAAGTTCAAGTATTCCGGTTCTGCACCGAGAATGCTA 1983
| |||||||||||||||||||||||||||||||| || || |||||||| ||| |||||
Sbjct 1892 CCCATAGGATTGGTCAAAAAAAAGAAGTTCAAGTGTTTCGATTCTGCACTGAGTCTGCTA 1951
Query 1984 TTGAGGCGAAAGTCATTGAGAGAGCTTACAAGAAGTTGGCACTTGATGCTCTGGTTATTC 2043
|||||| |||||| ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1952 TTGAGGAGAAAGTGATTGAAAGAGCTTACAAGAAGTTAGCACTTGATGCTCTGGTTATTC 2011
Query 2044 AGCAAGGGCGATTGGCAGAACAGAAAACTGTTAATAAGGATGAGTTGCTTCAAATGGTGA 2103
| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 2012 AACAAGGGAGATTGGCAGAACAGAAAACTGTCAATAAGGATGAGTTGCTTCAAATGGTAA 2071
Query 2104 GATATGGTGCTGAAATGGTGTTTAGTTCTAAAGATAGCACAATTACAGATGAGGATATTG 2163
||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 2072 GATATGGTGCTGAGATGGTGTTCAGTTCTAAAGATAGCACAATCACAGACGAGGATATTG 2131
Query 2164 ACAGAATCATTGCCAAAGGAGAAGAGGCAACGGCTGAACTTGATGCCAAGATGAAGAAAT 2223
| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 2132 ATAGAATCATTGCCAAAGGAGAAGAGGCAACAGCTGAACTTGATGCTAAGATGAAGAAAT 2191
Query 2224 TCACTGAAGATGCAATACAGTTTAAAATGGATGACAGT--G----CTGACTTTTATGATT 2277
|||| |||||||| |||||||||||||||||||||||| | ||||||| |||||||
Sbjct 2192 TCACAGAAGATGCTATACAGTTTAAAATGGATGACAGTAAGGGTGCTGACTTCTATGATT 2251
Query 2278 TTGAAGATGACAATAAGGATGAGAGCAAGGTGGATTTTAAAAAGATTGTGAGTGAAAATT 2337
|||| ||||||||||||||||| | |||| | ||||||||||||||||| || || ||||
Sbjct 2252 TTGATGATGACAATAAGGATGAAAACAAGCTCGATTTTAAAAAGATTGTAAGCGACAATT 2311
Query 2338 GGAATGATCCACCAAAAAGAGAGAGAAAGCGCAACTACTCTGAAACTGAATACTTCAAGC 2397
|||||||||| || || | |||||||||||||||||||||||| |||| ||||| ||||
Sbjct 2312 GGAATGATCCCCCCAAGCGGGAGAGAAAGCGCAACTACTCTGAATCTGAGTACTTTAAGC 2371
Query 2398 AAACACTGCGACAAGGTGCTCCAGCTAAACCTAAAGAGCCTAGAATTCCACGCATGCCCC 2457
||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2372 AAACATTGCGGCAAGGTGCTCCAGCTAAACCTAAAGAGCCTAGAATTCCGCGCATGCCCC 2431
Query 2458 AATTGCATGATTTTCAGTTCTTTAACATTCAGAGGTTGACTGAGCTGTACGAAAAAGAAG 2517
| ||||| ||||| |||||||||||||||||||| ||||| ||| |||| ||||| ||||
Sbjct 2432 AGTTGCACGATTTCCAGTTCTTTAACATTCAGAGATTGACCGAGTTGTATGAAAAGGAAG 2491
Query 2518 TGCGCT-TCCTTATGCAAGCACATCAGAAAACTCAAATGAAAGACACAATTGACGTTGAT 2576
| || | || | |||||| |||||||||||| ||| |||||||||||||||| |||||
Sbjct 2492 TACGTTATC-TCATGCAAACACATCAGAAAAATCAGTTGAAAGACACAATTGATGTTGAA 2550
Query 2577 GAACCTGAAGAAATAAGCGGAAGAAA-AGGAGCTATTGCTGGAAG-AGGCAAGCGAAACC 2634
||||| |||| | | ||| | | ||| || | ||| || ||| |||
Sbjct 2551 GAACCAGAAGG--TG-G-GGATCCCTTA--A-CTACTGAAG-AAGTAG--AAGA-AAAGG 2599
Query 2635 ATTTGACCTTACTGT-GG-GG-TTTCTCAACATGGAGCAGAAGAGACTTCAATGCCTTCA 2691
| || ||| || || || |||||||||||||||||||||||| || ||| | |||
Sbjct 2600 AGG-GA--TTATTGGAGGAGGGTTTCTCAACATGGAGCAGAAGAGATTTTAATACTTTCC 2656
Query 2692 TTAGGGCTTGTGAGAAGTATGGCCGGAATGACATAAAGAGTATTGCCTCTGAGATGGAAG 2751
| ||||||||||||||||||||||| || |||||||| || |||||||||||||||||||
Sbjct 2657 TCAGGGCTTGTGAGAAGTATGGCCGCAACGACATAAAAAGCATTGCCTCTGAGATGGAAG 2716
Query 2752 GGAAAACTGAGGAAGAGGTTGAACGATATGCTCAA-GT-TTTCCAAGAGCGATATAAAGA 2809
||||||| |||||||| |||||| ||||||| ||| || ||| ||||||| || || ||
Sbjct 2717 GGAAAACAGAGGAAGAAGTTGAAAGATATGC-CAAAGTATTTA-AAGAGCGGTACAAGGA 2774
Query 2810 GCTGAACGATTACGACAGAATCATCAAGAATATTGAGAGGGGGGAAGCAAGAATCTCTAG 2869
||||||||| || || |||||||| ||||| ||||||||||| || ||||| ||||||||
Sbjct 2775 GCTGAACGACTATGATAGAATCATTAAGAACATTGAGAGGGGAGAGGCAAGGATCTCTAG 2834
Query 2870 GAAAGATGAAATCATGAAAGCTATTGGGAAGAAACTGGATCGCTACAGAAACCCGTGGCT 2929
|||||| ||||||||||| || || ||||||||||||||||||||||||||||| |||||
Sbjct 2835 GAAAGACGAAATCATGAAGGCCATAGGGAAGAAACTGGATCGCTACAGAAACCCTTGGCT 2894
Query 2930 GGAACTGAAGATTCAGTATGGTCAGAACAAAGGGAAGCTGTACAATGAAGAGTGCGACCG 2989
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 2895 GGAACTGAAGATTCAATATGGTCAGAACAAAGGCAAGCTGTACAATGAAGAGTGTGACCG 2954
Query 2990 TTTCATGATATGCATGGTCCATAAACTTGGGTATGGAAACTGGGATGAGCTAAAGGCAGC 3049
||||||||| |||||| | || |||||||| ||||| || ||||||||||||||||||||
Sbjct 2955 TTTCATGATCTGCATGATTCACAAACTTGGTTATGGGAATTGGGATGAGCTAAAGGCAGC 3014
Query 3050 GTTTCGGACATCCCCCT-TGTTCAGGTTTGACTGGTTTGTAAAATCCCGCACAACTCAGG 3108
||| ||||||| | | |||||||||||||||||||||| ||||||||||| | |||||
Sbjct 3015 ATTTAGGACATCGTC-TGTGTTCAGGTTTGACTGGTTTGTGAAATCCCGCACGAGTCAGG 3073
Query 3109 AACTTGCAAGGAGATGTGACACACTAAT-CAGGTTGATTgagaaagagaatcaagaatat 3167
|||||||||| ||||| ||||| || || | | |||| ||||||||||| || || | |
Sbjct 3074 AACTTGCAAGAAGATGCGACACTCTGATTC-GACTGATCGAGAAAGAGAACCAGGAGTTT 3132
Query 3168 gatgagagagagaggcaagcccgaaaagagaagaagcttgcaaagaaTGCAACGCCATCA 3227
||||| ||||||||||||||||| |||||||||||||| || |||| |||||| ||||||
Sbjct 3133 GATGAAAGAGAGAGGCAAGCCCGCAAAGAGAAGAAGCTCGCGAAGAGTGCAACACCATCA 3192
Query 3228 AAGCGACCTTCT-GGTAGGCAAGCAAATGAGAGCCCTTCATCTCTTCTGAAGAAACGAAA 3286
|||||||||| | || || ||||||| |||||| |||||||| | |||||| || ||
Sbjct 3193 AAGCGACCTT-TAGGAAGACAAGCAAGTGAGAGTCCTTCATCGA--C-GAAGAAGCGGAA 3248
Query 3287 GCAGCTGTCAATG-GATGA--TTATGTG 3311
||| ||||| ||| ||||| |||||||
Sbjct 3249 GCACCTGTCGATGAGATGAGATTATGTG 3276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 179045819567
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5