BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488757
Length=4311
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18700.1 | Symbols: RUK, EMB3013 | Protein kinase family pro... 7033 0.0
AT1G33940.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1040 0.0
> AT5G18700.1 | Symbols: RUK, EMB3013 | Protein kinase family protein
with ARM repeat domain | chr5:6235096-6240733 REVERSE
LENGTH=4308
Length=4308
Score = 7033 bits (3808), Expect = 0.0
Identities = 4147/4314 (96%), Gaps = 9/4314 (0%)
Strand=Plus/Plus
Query 1 ATGAATCAGTACCACATATACGAAGCTATTGGACATGGCAAATGCTCGACTGTGTATAAA 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATCAGTACCACATCTACGAAGCTATTGGACATGGCAAATGCTCGACTGTGTATAAA 60
Query 61 GGAAGGAAGAAGAAGACGATCGAGTATTTTGCCTGCAAGAGTGTGGACAAGTCGCGGAAG 120
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 61 GGAAGGAAGAAGAAGACGATCGAGTATTTTGCCTGCAAGAGTGTCGATAAGTCGCGGAAG 120
Query 121 AGCAAGGTTCTTCAAGAGGTCAGGATCCTTCACTCGCTAAATCATCCAAACGTACTCAAG 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACAAGGTTCTTCAAGAGGTCAGGATCCTTCACTCGCTAAATCATCCAAACGTACTCAAG 180
Query 181 TTCTATGCGTGGTATGAAACTTCTGCTCACATGTGGTTAGTTCTGGAATATTGCGTTGGA 240
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCTATGCTTGGTATGAAACTTCTGCTCACATGTGGTTAGTTCTGGAATATTGCGTTGGT 240
Query 241 GGTGATCTCAGGACATTATTGCAGCAGGACTGTAAACTGCCAGAAGAATCAATCTATGGT 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GGTGATCTCAGGACATTATTGCAGCAGGACTGTAAACTGCCAGAAGAATCTATCTATGGT 300
Query 301 TTTGCTTTTGATCTTGTTATAGCTCTGCAGTACTTACATTCAAAAGGAATTATATATTGT 360
|||||| ||||||||| ||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 301 CTTGCTTATGATCTTGTCATAGCCCTGCAGTATTTACATTCGAAAGGAATTATATATTGT 360
Query 361 GATCTGAAACCATCAAACATCTTACTTGATGAAAACGGGCATATTAAGCTGTGTGATTTT 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 GATCTGAAACCATCAAACATCTTACTTGATGAAAATGGGCATATTAAGCTGTGTGATTTT 420
Query 421 GGATTGTCAAGGAAGCTGGATGATATTTCTAAATCTCCTTCCACGGGAAAACGTGGTACC 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGTTTGTCAAGGAAGCTGGATGATATTTCTAAATCTCCTTCCACGGGAAAACGTGGTACC 480
Query 481 CCGTATTATATGGCTCCAGAGCTATATGAAGATGGAGGGATCCATTCTTTTGCTTCTGAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCGTATTATATGGCTCCAGAGCTATATGAAGATGGAGGGATCCATTCTTTTGCTTCTGAT 540
Query 541 CTGTGGGCACTTGGTTGTGTATTATATGAATGTTACACAGGAAGACCTCCTTTTGTGGCA 600
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTGTGGGCACTTGGTTGTGTACTATATGAATGTTACACAGGAAGACCTCCTTTTGTGGCA 600
Query 601 AGAGAATTTACCCAGCTTGTGAAATCTATTCATTCAGATCCAACTCCTCCACTCCCTGGA 660
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGAGAGTTTACCCAGCTTGTGAAATCTATTCATTCAGATCCAACTCCTCCACTCCCTGGA 660
Query 661 AATGCAAGCCGTTCATTTGTCAATCTCATTGAGTCTCTTCTTATCAAAGACCCAGCTCAA 720
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AATGCTAGTCGTTCATTTGTCAATCTCATTGAGTCTCTTCTTATCAAAGACCCAGCTCAA 720
Query 721 AGAATACAATGGGCAGATCTCTGTGGTCATGCATTCTGGAAGAGTAAGATAAACTTAGTA 780
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 721 AGAATACAATGGGCAGATCTCTGTGGTCATGCATTTTGGAAGAGTAAGATAAATTTAGTT 780
Query 781 CAGCTGCCTACTCAGCCTGCTTTTGATAATATGATTGGCATATACACAAAGCCATGCCTT 840
||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 781 CAGTTGCCTACTCAGCCTGCTTTTGATGATATGATTGGCATAAACACAAAGCCATGCCTT 840
Query 841 TCCGAGCGAAATGGAGACAGACCAAATAAGACCCCTCCAAAGTATCGGGAGAAAGATCCA 900
|||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| |
Sbjct 841 TCCGAGCGTAATGGAGATAGACCAAATAAGACCCCTCCAAAGTACCGGGAGAAAGATCGA 900
Query 901 AAAGGGGGTTCAAAGCAAAATGAGAACTCCGTTCAAGGTTCAAAAGGCCATGAGACGCCG 960
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 901 AAAGGGGGTTCAAAGCAAAATGAGAACTCCATTCAAGGTTCAAAAGGCCATGAGACGCCG 960
Query 961 ATAAAGGGTACGCCTGGTGGTTCTAAAGCTCAAACAAAGCTTCCTAGTAGAGCAACTGAG 1020
|||||||| || |||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 961 ATAAAGGGCACCCCTGGTGGGTCTAAAGCTCAAGCAAAGCTTCCTAGTAGAGCAACTGAG 1020
Query 1021 GAAAAGCATGGAGGTCGTCCTGGTGCTAACAGACAGATGAATATTCTGAGATTGTCAAGG 1080
|||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||
Sbjct 1021 GAAAAGCATGGAGGTCGTCCTGCTGCTAACAGACAGGTGAATATTCTAAGATTGTCAAGG 1080
Query 1081 ATAGCAAAGGCAAATCTTCAAAAGGAAAATGAGAAGGAAAACTATAGGAGACCCTTACCT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ATAGCAAAGGCAAATCTTCAAAAGGAAAATGAGAAGGAAAACTATAGGAGACCCTTACCT 1140
Query 1141 AATAGCAACGAGAATTGTGCAGAAGTGAAGATTGAGAACACTGACATGGAACTTGATTTT 1200
|||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 1141 AATAGCAACGAGAATTGTGCAGAAGTGAAGATCGACAACACTGATATGGAACTTGATTTT 1200
Query 1201 GATGAAAACAATGATGATGAGGGACCTGATGAATCAGAAGGAACCGAAAACACCTCTTGT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GATGAAAACAATGATGATGAGGGACCTGATGAATCAGAAGGAACCGAAAACACCTCTTGT 1260
Query 1261 GCACAAGAAGAAAGAGTTGTGAGCCAAAATGAGAGTCACAGAAGACAAGGAGTTCTAAGC 1320
||||||||||||||||| ||||||| ||||||| ||||||||||||| ||||| |||||
Sbjct 1261 GCACAAGAAGAAAGAGTAATGAGCCATAATGAGAATCACAGAAGACAAAGAGTTGTAAGC 1320
Query 1321 AGTAATGTGCCTGATGAGAACTCATCTGCAAATGAAACACCAATCTCGGGTGAAGCAAAA 1380
||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||| |
Sbjct 1321 AGTAATGTGCCTGATGAGAACTCGTCTGCAAATGAAACACCAACCTTGGGTGAAGCAAGA 1380
Query 1381 GATTGCCATGAAGAGCAGTCAGAGCAAATGGACGTGTCAGCTGCGCCACCTAGTGCTAGT 1440
|||||||||||||| |||||||||| ||||||| |||||||||| |||||||||||||||
Sbjct 1381 GATTGCCATGAAGATCAGTCAGAGCCAATGGACATGTCAGCTGCCCCACCTAGTGCTAGT 1440
Query 1441 CCTCAACTTAAAACTCACCGAGGAAGAGAAATTTCTGGGGTTGCTGTTAATCATGACTCA 1500
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1441 CCTCAACTTAAAACTCACCGAGGAAGAGAAACTTCTGGGGTTGCTGTTAATCATGACTCA 1500
Query 1501 TCTAAAACACCTACTAGCCTCAGTGACGTCCTTTGGCATATATCTGATCTTTCTGTTAGG 1560
|||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1501 TCTAAAGCACCTACTAGCCTCACTGACGTCTTTTGGCATATATCTGATCTTTCTGTTAGG 1560
Query 1561 CCTGTCATGCCCAGCAGAAAATCTGACAAAGAAGCTGTGCCTTCTCTCTTATTCGAAACA 1620
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1561 CCTGTCATGCCCAGCAGAAAATCTGACAAAGAAGCTGTGCATTCTCTCTCATTCGAAACA 1620
Query 1621 CCACAGCCTTCTGATTTTGGTAAGATGGGAAAGCAAGAATTAGAACCGCTTAACAATAGG 1680
|||||||| ||||||||| |||||| |||||||||||||||||||||||| |||||||||
Sbjct 1621 CCACAGCCCTCTGATTTTAGTAAGAAGGGAAAGCAAGAATTAGAACCGCTGAACAATAGG 1680
Query 1681 ATCATAACAGTTCTAAGTGGGAGCAGTTCTGGCCTGTCAGAGAAACAGAATTTGATCAGA 1740
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1681 ATCATAACAGTTCTAAGTGGGAGCAGTTCTGGACTGTCAGAGAAACAGAATTTGATCAGA 1740
Query 1741 TACCTCGAGACATTGAGTAGCAATGCTGATGCAGCCAACATCCTGACCAACGGACCAATA 1800
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1741 TACCTCGAGACATTGAGTACCAATGCTGATGCAGCCAACATCCTGACTAACGGACCAATA 1800
Query 1801 ATGCTTGTGCTTGTTAAAGTTCTGAGATTATCCAAGACCCCAGCATTTCGTGTACAAATT 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 ATGCTTGTGCTTGTTAAAGTTCTGAGATTATCCAAGACCCCAGCATTTCGTGTACAAATT 1860
Query 1861 GCTTCACTAATTGGTTTGTTAATTCGGCATTCTACTTCAATCGAAGATGACTTGGCAAAT 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 GCTTCACTAATTGGTTTGTTAATTCGGCATTCTACTTCAATCGAAGATGACTTGGCAAAT 1920
Query 1921 TCTGGTATTTTAGACTCTCTTACTAATGGCCTCAGAGACAAGCATGAAAAAGTGAGAAGA 1980
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1921 TCTGGTATTTTAGACTCTCTTACTAATGGCCTCAGAGACAAGCATGAGAAAGTGAGAAGA 1980
Query 1981 TTCTCTATGGCAGCTCTAGGTGAATTGCTATTCTACATCTCAACTCAAAATGAGCATAAG 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 TTCTCTATGGCAGCTCTAGGTGAATTGCTATTCTACATCTCAACTCAAAATGAGCATAAG 2040
Query 2041 GATTTCAAACCACCAGAATCCCCATCAAAAGAAACCCGGTCTGCATCGGGTTGGCAGGTT 2100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2041 GATTTCAAACCACCAGAATCCCCATCAAAAGAAACCCGGTCTGCATCGGGTTGGCAGGTT 2100
Query 2101 TCGAATGCCTTGATCTCTCTTGTATCATCTGTCTTACGGAAGGGAGAAGATGACCTGACT 2160
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2101 TCAAATGCCTTGATCTCTCTTGTATCATCTGTCTTACGGAAGGGAGAAGATGACCTGACT 2160
Query 2161 CAGCTCTATGCGTTAAGGACGATAGAAAACATCTGCAGTCAAGGAGCTTACTGGGCCACC 2220
||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2161 CAGGTTTATGCGTTAAGGACAATAGAAAACATCTGCAGTCAAGGAGCTTACTGGGCCACC 2220
Query 2221 CGTTTCTCCAGCCAAGATTTGATTAGCAACCTCTGCTATATCTACAGGGCAACTGGGAAA 2280
|||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 2221 CGTTTCTCCAGCCAGGATTTGATTAGCAACCTCTGCTATATCTACAAGGCAACGGGGAAA 2280
Query 2281 CAGGAGAGCATGAGGCAGACGGCTGGATCATGTTTAGTCCGTCTTGCTCGCTTTAATCCT 2340
||||||||||||||||| || |||||||| |||||||||||||||||||||||||| |||
Sbjct 2281 CAGGAGAGCATGAGGCAAACTGCTGGATCCTGTTTAGTCCGTCTTGCTCGCTTTAACCCT 2340
Query 2341 CCTTGCATTCAGACGGTCGTGGAAAAGCTTTCATTGAAAGAAATAGCTTCGTCATTTGTC 2400
|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 2341 CCTTGCATTCAGACGGTCGTGGAAAAGCTTTCATTGAAGGAAATAGCTTCATCTTTTGTC 2400
Query 2401 AAAGGCAGCGCACGAGAGCAGCAAGTCTGCTTAAATCTTCTGAACATGGCTATGATTGGA 2460
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2401 AAAGGCAGCGCAAGAGAGCAGCAAGTCTGCTTAAATCTTCTGAACATGGCTATGATTGGA 2460
Query 2461 AGTCATACATTCACAAGCTTTGGAAGGCATCTTGTGACATTGACAGAGGAGAAAAATCTT 2520
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 2461 AGTCATACATTCACAAGCTTTGGAAGGCATCTCGTGACATTGACAGAGGAGAAGAACCTT 2520
Query 2521 TTCCCTAGTTTGCTCTCCATCATAGAGCAAGGAACGGAAGTTCTGAGGGGGAAAGCTCTT 2580
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 2521 TTCCCTAGTTTACTCTCCATCATAGAGCAAGGAACAGAAGTTCTGAGGGGCAAAGCTCTT 2580
Query 2581 CTCTTTGTTGCACTTCTCTGCAAAAACAGTAGGCGTTGGCTGACAAATTTCTTCTGCAAT 2640
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2581 CTCTTTGTTGCATTTCTCTGCAAAAACAGTAGGCGTTGGCTGACAAATTTCTTCTGCAAT 2640
Query 2641 GCAAGATTTCTTCCTGTGGTGGACAGATTAGCTAAAGAAAAAGACAGTTACGTGCAACAA 2700
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2641 GCAAGATTTCTTCCTGTGGTGGACAGATTAGCTAAAGAAAAAGACAGTTACCTGCAACAA 2700
Query 2701 TGTCTTGAGGCATTTGTGAATGTAATCGCCTCCATAATACCGGGCTTGCTGGATACAATA 2760
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2701 TGTCTTGAGGCATTTGTGAATGTAATCGCCTCCATAATACCGGGCATGCTGGATACAATA 2760
Query 2761 ACCAATGATATCCAACAACTGATGACAGGAAGACGCCATGGACCTGTCTCTCCCCTTAAC 2820
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2761 ACCAATGATATCCAACAACTGATGACAGGAAGACGCCATGGACCTGTCTCTCCCCTTAAT 2820
Query 2821 AGTCGAGCTCCTTTAAAGACTAATGCACACCTGTTCCCTGTGGTTCTTCATCTTCTCGGA 2880
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 2821 AGTCGAGCTCCTGTAAAGACTAATGCACACCTGTTCCCTGTGGTTCTTCACCTTCTGGGA 2880
Query 2881 AGCTCTTCGTTTAAGAACAAGATGGTAACTCCACAAGTCGTAAGGCAGTTGGCAAATCTT 2940
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2881 AGCTCTTCGTTTAAGAACAAGATGGTAACTCCACAAGTCCTAAGGCAGTTGGCAAATCTT 2940
Query 2941 ACAAAACTTGTGGAAGCATCATTTCAGGGAAGAGATGACTTCCGTATAACCCTTCTTCAA 3000
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 2941 ACAAAACTTGTGGAAGCATCGTTTCAGGGAAGAGATGACTTCCGTGTAACCCTTCTTCAA 3000
Query 3001 GTTCTAGAATGCATAGCAGGAGATGCGCCTCTGGTTACACAAAATGGTGAGATTATTATC 3060
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3001 GTTCTAGAGTGCATAACAGGAGATGCGCCTCTGGTTACACAAAATGGTGAGATTATTATC 3060
Query 3061 CGTGAGATTCTCCCATCTCTGGCTGTAATTTACAATGGAAACAAAGACGGGGATGCTCGG 3120
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 3061 CGTGAGATTCTCCCATCTCTGGCTGCAATTTACAATGGAAACAAAGACGGTGATGCTCGG 3120
Query 3121 TTTCTCTGTTTGAAGATCTGGTTCGATTCAATGACCATTCTCTTAACTGAGTGCACTGAA 3180
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 3121 TTTCTCTGTTTGAAAATCTGGTTCGATTCATTGACCATTCTCTTAACTGAGTGCACCGAA 3180
Query 3181 ATCGAGCAACAAACATCTGAGGATTTGAAATCAATATCCAACTCTCATTTTCTCCCACTC 3240
||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 3181 ATCGAGCAACAAATATCGGAGGATTTGAAATCAATATCCAACTCTCATTTCCTCCCACTC 3240
Query 3241 TACCCTGCACTGATCCAAGACGAAGATCCAATCCCAGCTTACGCTCAAAAGCTCCTTGTC 3300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3241 TACCCTGCACTGATCCAAGACGAAGATCCAATCCCAGCTTACGCTCAAAAGCTCCTTGTC 3300
Query 3301 ATGCTTGTTGAGTTTGATTACATCAAAATCTCCAACTTATTGCATCATAATACAGTTTCA 3360
||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||
Sbjct 3301 ATGCTCGTTGAGTTTGATTACATCAAAATCTCCAACTTATTGCGTCACAATACGGTTTCA 3360
Query 3361 CAATGCTTCGAGTTTCTTCTCGGAGACTTATCAAGCGCAAATGTGAACAATGTCAAACTC 3420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 3361 CAATGCTTCGAGTTTCTTCTCGGAGACTTATCAAGCGCAAATGTGAACAATGTCAAGCTC 3420
Query 3421 TGTCTTGCCTTAGCTTCAGCTCCAGAGATGGAAACTAAACTACTCTCTCAGCTCAAAGTA 3480
||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3421 TGTCTCGCCTTGGCTTCAGCTCCAGAGATGGAAAGTAAACTACTCTCTCAGCTCAAAGTA 3480
Query 3481 GTGAGGAGAATCGGAAATCTGTTGGAATTCGTGAATGCCAAAGACATGGAAGATTTCCTC 3540
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 3481 GTGAGGAGAATCGGAAATCTGCTGGAATTCGTGAATGCCAAAGATATGGAAGATTTCCTA 3540
Query 3541 GAACCCACTTTAAGTCTCTGCAGAGCTTTTCTGCTACGGTCACTTGGGAACAAGAAAGGT 3600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3541 GAACCCACTTTAAGTCTCTGCAGAGCTTTTCTGCTACGGTCACTTGGGAACAAGAAAGGT 3600
Query 3601 CTCAGCTCCAACTACACAAAAGAGCCAACGCTTTTATCAGAGACATCTTTTACATTCGAG 3660
||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 3601 CTCAGTTCCAACTACACAAAAGAGCCAACGCTTTTATCAGAGGCATCTTTTACGTTCGAG 3660
Query 3661 GTTGATCCACAGGAATGCATAAGAGACATTGCAGATTTCGGTAGCAACATTGGCCTGTTC 3720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 3661 GTTGATCCACAGGAATGCATAAGAGACATTGCAGATTTCGGTAGCAACATTGGCCTATTC 3720
Query 3721 TTGCACTTTGCAGGTTTAGATGACGACACAAGCATCGCAGTCGCAGATATTGCCTCTGAA 3780
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 3721 TTGCACTTTGCAGGCTTAGACGATGACACAAGCATCGCAGTCGCAGATATTGCCTCTGAA 3780
Query 3781 TGTGTTGTATTGCTACTCAAAGCGGCTTCGAGAGAAGCCACGACGGGATTCTTAACCAAT 3840
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3781 TGTGTTGTGTTGCTACTCAAAGCGGCTTCGAGAGAAGCCACGACGGGATTCTTAACCAAT 3840
Query 3841 CTTCCTAAGATCACACCGATTCTGGACTCGTGGCGCAGGAGGAAGAGCACAGAGCTACAC 3900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3841 CTTCCTAAGATCACACCGATTCTGGACTCGTGGCGCAGGAGGAAGAGCACAGAGCTACAC 3900
Query 3901 TTGTTGGTTCTGAAGAGAGTCTTACATTGTTTGGGTTATGCTTGCAAGCAGTATCTATCG 3960
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3901 TTGTTGGTTCTGAAGAGAGTCTTGCATTGTTTGGGTTATGCTTGCAAGCAGTATCTATCG 3960
Query 3961 CAGGCGATGATTTTGTCGATATCAGGACACGATGTCTCGAAGATCAACACCATCGTCTCT 4020
||||||||||||||||||||||| |||||||||||||| ||||||||| | || ||||||
Sbjct 3961 CAGGCGATGATTTTGTCGATATCGGGACACGATGTCTCAAAGATCAACGCAATTGTCTCT 4020
Query 4021 GAGATGAAGAACTCAGACGTCGCTGGTCTTAATAGCGTTGCCACCCTCGTTGCTATGGAA 4080
||||||||||||||||||| |||||||||||| ||| | || | |||||||| |||||
Sbjct 4021 GAGATGAAGAACTCAGACGCCGCTGGTCTTAACAGCATCGCTTCACTCGTTGCCATGGAG 4080
Query 4081 TTGCAGAGATTGCCTCGTTGAGTTTGAAGTTTTCTGAACAAAGCAGGATTAAC-A--ACA 4137
||||||||||| ||||||||| |||||||| ||||||||| | | |||||| | |||
Sbjct 4081 TTGCAGAGATTACCTCGTTGAATTTGAAGTCATCTGAACAATG--G-ATTAACGACGACA 4137
Query 4138 ATGACGCTGAGCTGTAGATTTGGAGTACGTACGAGGTAAAACAAACGCAAAAACATGTGA 4197
||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||
Sbjct 4138 ATGACGCTGAGCTGTAGATTTTGAGTACATGCGAGGTAAAACAAACGCAAAAACATGTGA 4197
Query 4198 CAAATTGAAACCCAGAATCGAGATTTGTCTCTTTTTAATGTATATTTCTTCTCTCCATTA 4257
|||| |||||||||||||| ||||||||||||| |||||||||||||||| ||| |||
Sbjct 4198 CAAAGTGAAACCCAGAATCAAGATTTGTCTCTTCTTAATGTATATTTCTT-TCT--ATTG 4254
Query 4258 CAAATTTTGTACCACTAGTACAATCTACTTCCTTAATATTATCTTCATTTAGAC 4311
||| ||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 4255 CAATTTTTGTACCACTAATACAATCTACTTCCTTAATATTATCTTCTTTTAGAC 4308
> AT1G33940.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Protein kinase family protein with ARM repeat domain
(TAIR:AT5G18700.1); Has 128 Blast hits to 95 proteins in 44
species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 0;
Plants - 78; Viruses - 0; Other Eukaryotes - 13 (source: NCBI
BLink). | chr1:12330576-12332785 REVERSE LENGTH=1842
Length=1842
Score = 1040 bits (563), Expect = 0.0
Identities = 625/656 (95%), Gaps = 0/656 (0%)
Strand=Plus/Plus
Query 3468 TCAGCTCAAAGTAGTGAGGAGAATCGGAAATCTGTTGGAATTCGTGAATGCCAAAGACAT 3527
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 855 TCAGCTCAAAGTAGTGAGGAGAATCGGAAATCTGTTTGAATTCGTGAATGCCAAAGACAT 914
Query 3528 GGAAGATTTCCTCGAACCCACTTTAAGTCTCTGCAGAGCTTTTCTGCTACGGTCACTTGG 3587
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 GGAAGATTTCCTAGAACCCACTTTAAGTCTCTGCAGAGCTTTTCTGCTACGGTCACTTGG 974
Query 3588 GAACAAGAAAGGTCTCAGCTCCAACTACACAAAAGAGCCAACGCTTTTATCAGAGACATC 3647
|||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 975 GAACAAGATAGGTCTCAGCTCCAACTACACGAAAGAGCCAATGCTTTTATCAGAGACATC 1034
Query 3648 TTTTACATTCGAGGTTGATCCACAGGAATGCATAAGAGACATTGCAGATTTCGGTAGCAA 3707
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 GTTTACATTCGAGGTTGATCCACAGGAATGCATAAGAGACATTGCAGATTTCGGTAGCAA 1094
Query 3708 CATTGGCCTGTTCTTGCACTTTGCAGGTTTAGATGACGACACAAGCATCGCAGTCGCAGA 3767
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 CATTGGCCTATTCTTACACTTTGCAGGTTTAGATGACGACACAAGCATCGCAGTCGCAGA 1154
Query 3768 TATTGCCTCTGAATGTGTTGTATTGCTACTCAAAGCGGCTTCGAGAGAAGCCACGACGGG 3827
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 1155 TATTGCCTCTGAATGTGTTGTGTTGCTACTCAAAGCCGCTTCGAGAGAAGCCACGACAGG 1214
Query 3828 ATTCTTAACCAATCTTCCTAAGATCACACCGATTCTGGACTCGTGGCGCAGGAGGAAGAG 3887
||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1215 ATTTTTAACCAATCTTCCTAAGATCACACAGATTCTGGACTCATGGCGCAGGAGGAAGAG 1274
Query 3888 CACAGAGCTACACTTGTTGGTTCTGAAGAGAGTCTTACATTGTTTGGGTTATGCTTGCAA 3947
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1275 CACAGAGCTACACTTGTTGGTTCTGAAGAGAGTCTTGCATTGTTTGGGTTATGCTTGCAA 1334
Query 3948 GCAGTATCTATCGCAGGCGATGATTTTGTCGATATCAGGACACGATGTCTCGAAGATCAA 4007
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1335 GCAGTATCTATCGCAGGCGATGATTTTGTCGATATCGGGACACGATATCTCGAAGATCAA 1394
Query 4008 CACCATCGTCTCTGAGATGAAGAACTCAGACGTCGCTGGTCTTAATAGCGTTGCCACCCT 4067
| |||| ||||| ||||||||||||||||||||||||||||||||||| || || | ||
Sbjct 1395 CGCCATTGTCTCGGAGATGAAGAACTCAGACGTCGCTGGTCTTAATAGTGTCGCTTCACT 1454
Query 4068 CGTTGCTATGGAATTGCAGAGATTGCCTCGTTGAGTTTGAAGTTTTCTGAACAAAG 4123
|||||| ||||| ||||||||||| |||||||| ||||||||| |||||||||||
Sbjct 1455 CGTTGCCATGGAGTTGCAGAGATTACCTCGTTGTGTTTGAAGTCATCTGAACAAAG 1510
Score = 933 bits (505), Expect = 0.0
Identities = 547/567 (96%), Gaps = 3/567 (1%)
Strand=Plus/Plus
Query 2404 GGCAGCGCACGAGAGCAGCAAGTCTGCTTAAATCTTCTGAACATGGCTATGATTGGAAG- 2462
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 GGCAGTGCACGAGAGCAGCAAGTCTGCTTAAATCTTCTGAACATGGCTATGATTGGAAGT 351
Query 2463 --TCATACATTCACAAGCTTTGGAAGGCATCTTGTGACATTGACAGAGGAGAAAAATCTT 2520
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 352 CATCATACATTCACAAGCTTTGGAAGGCATCTCGTGACATTGACAGAGGAGAAAAATCTT 411
Query 2521 TTCCCTAGTTTGCTCTCCATCATAGAGCAAGGAACGGAAGTTCTGAGGGGGAAAGCTCTT 2580
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 412 TTCCCTAGTTTACTCTCCATCATAGAGCAAGGAACGGAAGTTCTGAGGGGGAAAGCTCCT 471
Query 2581 CTCTTTGTTGCACTTCTCTGCAAAAACAGTAGGCGTTGGCTGACAAATTTCTTCTGCAAT 2640
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 CTCTTTGTTGCATTTCTCTGCAAAAACAGTAGGCGTTGGCTGACAAATTTCTTCTGCAAT 531
Query 2641 GCAAGATTTCTTCCTGTGGTGGACAGATTAGCTAAAGAAAAAGACAGTTACGTGCAACAA 2700
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 532 GCAAGATTTCTTCCTGTGGTGGACAGATTAGCTAAAGAGAAAGACAGTTACCTGCAACAA 591
Query 2701 TGTCTTGAGGCATTTGTGAATGTAATCGCCTCCATAATACCGGGCTTGCTGGATACAATA 2760
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 592 TGTCTTGAGGCATTTGTGAATGTAATCACCTCCATAATACCGGGGTTGCTGGATACAATA 651
Query 2761 ACCAATGATATCCAACAACTGATGACAGGAAGACGCCATGGACCTGTCTCTCCCCTTAAC 2820
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 652 ACCAATGATATCCAACAGCTGATGACTGGAAGACGCCATGGACCTGTCTCTCCCCTTAAC 711
Query 2821 AGTCGAGCTCCTTTAAAGACTAATGCACACCTGTTCCCTGTGGTTCTTCATCTTCTCGGA 2880
||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 712 AGTCGAGCTTCTGTAAAGACTAATGCACACCTGTTCCCTGTGGTTCTTCACCTTCTCGGA 771
Query 2881 AGCTCTTCGTTTAAGAACAAGATGGTAACTCCACAAGTCGTAAGGCAGTTGGCAAATCTT 2940
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 772 AGCTCTTTGTTTAAGAACAAGATGGTAACTCCACAAGTCCTAAGGCAGTTGGCAAATCTT 831
Query 2941 ACAAAACTTGTGGAAGCATCATTTCAG 2967
|||||||||||||||||||| ||||||
Sbjct 832 ACAAAACTTGTGGAAGCATCGTTTCAG 858
Score = 459 bits (248), Expect = 1e-127
Identities = 278/293 (95%), Gaps = 0/293 (0%)
Strand=Plus/Plus
Query 1186 ATGGAACTTGATTTTGATGAAAACAATGATGATGAGGGACCTGATGAATCAGAAGGAACC 1245
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1 ATGGAACTTGATTTTGATGAAAACGATGATGATGAGGGACTTGATGAATCAGAAGGAACC 60
Query 1246 GAAAACACCTCTTGTGCACAAGAAGAAAGAGTTGTGAGCCAAAATGAGAGTCACAGAAGA 1305
|| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 61 GAGAACACCTCTTGTGCACAAGAAGAAAGAGTTATGAGCCAAAATGAGGGTCACAGAAGA 120
Query 1306 CAAGGAGTTCTAAGCAGTAATGTGCCTGATGAGAACTCATCTGCAAATGAAACACCAATC 1365
||||||||| ||||||||||||| || ||||||||||| ||||||||||||| ||||| |
Sbjct 121 CAAGGAGTTATAAGCAGTAATGTCCCCGATGAGAACTCGTCTGCAAATGAAATACCAACC 180
Query 1366 TCGGGTGAAGCAAAAGATTGCCATGAAGAGCAGTCAGAGCAAATGGACGTGTCAGCTGCG 1425
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 181 TCGGGTGAAGCAAGAGATTGCCATGCAGAGCAGTCAGAGCCAATGGACGTGTCAGCTGCG 240
Query 1426 CCACCTAGTGCTAGTCCTCAACTTAAAACTCACCGAGGAAGAGAAATTTCTGG 1478
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCACTTAGTGCTAGTCCTCAACTTAAAACTCACCGAGGAAGAGAAATTTCTGG 293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 214915183812
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5