BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488759
Length=1701
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18710.1 | Symbols: | Domain of unknown function (DUF3444) ... 1208 0.0
AT5G18720.1 | Symbols: | Domain of unknown function (DUF3444) ... 174 2e-42
AT5G18730.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular... 128 2e-28
> AT5G18710.1 | Symbols: | Domain of unknown function (DUF3444)
| chr5:6241134-6243479 FORWARD LENGTH=1918
Length=1918
Score = 1208 bits (654), Expect = 0.0
Identities = 786/849 (93%), Gaps = 11/849 (1%)
Strand=Plus/Plus
Query 853 ACGACTGGGAAAGAAGCAGAAGGTGTGCCTCGAGGTGCTTATGAGCTGGATCCCGCTGCA 912
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1081 ACGACT-GGAAAGAAGCAGAAGGTGTGCCTCGAGGTGCTTATGAGCTGGATCCTACTGCA 1139
Query 913 TTACCAGCAAATATCAAAGAGATAGATGTCCCTTTACATCTACTAGCAGAGCCTAAAGTG 972
|||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||| |
Sbjct 1140 TTACCAACAAATATCAAAGAGATAGACGTCCCTTTGCATCTACTAGCAGAGCCTAAAGAG 1199
Query 973 TCAAATTCCGAGAATAATACGCAATCGCAATGCGTGCACTTTGCTAGTAAGGGAAGGACT 1032
||||| ||||||||||||||| | ||||||||||||||||||||| | |||||||||||
Sbjct 1200 TCAAACTCCGAGAATAATACGTATTCGCAATGCGTGCACTTTGCTTGCAAGGGAAGGAC- 1258
Query 1033 TTCCAAACTGGCCAAGTCTGGTCATTTTGCAGTGGTGAGGATTATTTGCCCCGGTACTAT 1092
|| |||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1259 TTAGAAACAGGCCAAGTCTGGTCATTTTGCAGTGGTGACGATTACTTGCCCCGGTACTAT 1318
Query 1093 GGCAAGATTCAGAAAATCACATTTGTTCAGGCATTTGAGCAGGATCCGGTAGTTAAATTG 1152
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1319 GGCAAGATTCAGAAAATCACATTTGTTCAGGCATTTGAGCAGGATCCAGTAGTTAAATTG 1378
Query 1153 CATGTAGGTCGGCTAAAGGCTACACCAACCAAAGGTGTCATCCAGTGGATTGACAAGAGA 1212
|||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||
Sbjct 1379 CATGTAGGTCGGCTAAAGGCTACAGTAATCAAAGGCGTCATCCAGTGGATTGACAAGAGA 1438
Query 1213 ATGCCCATTGGCTGTGGGAATTTCCGGGCAACAAAAGCTCTTGAAATATTCACCGATCTT 1272
||||||| ||||||||||| |||||||||||| |||||||||||||||||||| ||||||
Sbjct 1439 ATGCCCACTGGCTGTGGGAGTTTCCGGGCAACTAAAGCTCTTGAAATATTCACTGATCTT 1498
Query 1273 GATGTATTTTCACGTCAGATTAGCCCAGACTCATCCGGGGATGGAAATAATTACAGTATC 1332
|||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct 1499 GATGTATTTTCACGTCAGATTAGCTCAGA-------GG--ATGGAAATAATTACAGTATC 1549
Query 1333 ATGCCAAAGACTGGTGATATCTGGGCTATCTACAGAAACTGGAGTAATGACATTGATGTC 1392
||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1550 ATGCCAAAGACTGGTAATATTTGGGCTATTTACAGAAACTGGAGTAATGACATTGATGTG 1609
Query 1393 GTTGATCTTCAATCCCAGACATATGATATTGTGGAAGTTCTGGATGATAAACAGGACTAC 1452
||||||||||||||||| || |||||| |||||||| |||||||||||||||||||||||
Sbjct 1610 GTTGATCTTCAATCCCAAACTTATGATCTTGTGGAAATTCTGGATGATAAACAGGACTAC 1669
Query 1453 AAGGTTCTGCTGTTGGCGCCTGATGGAGGCTTTAAATTAGCCGATCGTGCAGGTTTTGGT 1512
||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1670 AAGGTTCTGTTGTTGGCACCTGATGGTGGCTTTAAATTAGCAGATCGTGCAGGTTTTGGT 1729
Query 1513 TCGGTGTATTTAGCTGCTACTGAGCACTGGATCGATGGCGCGGATGTGAGATTCACAATC 1572
|||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||
Sbjct 1730 TCGGTGTATTTAGCTGCTACTGAGCACTGGATTGATGGCAAGGATGTAAGATTCACAATC 1789
Query 1573 CCGAAAGCTGAACTGCTCAGATTCTCCCATCAAGTTCCTACTTCGAAAGTGAGAGAAGAG 1632
|||||| | ||||| ||||||||||| ||||||||||| ||||||||||| | | |||||
Sbjct 1790 CCGAAATCCGAACTACTCAGATTCTCGCATCAAGTTCCAACTTCGAAAGTAACAAAAGAG 1849
Query 1633 ATACATGGAGCTTTGCAAGAAGTCTATGAACCTAATATTGAGGCATTACCCGTTAACTTG 1692
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1850 ATACATGGAGCTTTGCAAGAAGTCTATGAACCTAATATTGAGGCATTACCAGTGAACTTG 1909
Query 1693 ATTCTATGA 1701
|||||||||
Sbjct 1910 ATTCTATGA 1918
Score = 1114 bits (603), Expect = 0.0
Identities = 778/862 (90%), Gaps = 14/862 (2%)
Strand=Plus/Plus
Query 1 GAGATCATATTGGAGGAGTCACTCAAGGCTGAAGCTGTGATGGAGAGGACTAACCCTGAT 60
|||||||||||||||||| | ||||||||| ||||||||||||| | |||||||||||||
Sbjct 97 GAGATCATATTGGAGGAGCCGCTCAAGGCTAAAGCTGTGATGGAAAAGACTAACCCTGAT 156
Query 61 GGTGCTCAAGAGCTTCCTTCATCTGGTCTCGAACAGGCTCCACTTCATCACAATCAGAAG 120
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 157 GGTGCTCAAGAGCTTCCTTCATCTGGTCTCGAACAGGCTCCACTTCATCTCAATCAGAAA 216
Query 121 TCTGGTGAGAAGAGAAAGAGAGAAGGATTGGTGAGAAAAGAATGTGAAACTGGAAACAGC 180
||||||||||||||||||||||||||||||||||||| |||| | ||| |||||||||||
Sbjct 217 TCTGGTGAGAAGAGAAAGAGAGAAGGATTGGTGAGAAGAGAAAGAGAAGCTGGAAACAGC 276
Query 181 AGCGAGAGTGAACAAGTTATTATAGTTGGTGACACTAAAGCTATAGAAGATTTATGTTTT 240
||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 277 AGCGAGAATGAAGAAGTTATTATTGTTGGTGACACTAAAGCTATAGAAGATTTATGTTTT 336
Query 241 GATGGAGGAGAGCAGTCTCAGAGGTCTGTGTATAGCAAGCAACAAGCTTTCAATGTACAA 300
|||||||||||||||||||||| ||||||||||||||||| ||||||||| || |||
Sbjct 337 GATGGAGGAGAGCAGTCTCAGAAGTCTGTGTATAGCAAGCGGCAAGCTTTCGTTGCACAG 396
Query 301 AGCAACAGAAATGGTGAAGGGTCTTTGGAAAAGGAAGAAGTAGGAGAAGAACCAGAAAGA 360
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 397 AGCAACAGAAATGGTGAAGGGTCTTTGGGCAAGGAAGAAGCAGGAGAAGAACCAGAAAGA 456
Query 361 GCAAAGCAGGTTTTAGCTTTCAATGACTTTGATAAGCTGAGGAAAGTAAGCA-ATTTTGC 419
|||||| ||||||||||||||||||||||||||||||||||| ||| ||| | | ||||
Sbjct 457 GCAAAGTAGGTTTTAGCTTTCAATGACTTTGATAAGCTGAGGGAAG-AAGTACACTTTGA 515
Query 420 AGTTGGCCAGACTTGGGCTCTTTATGATACAGTGGATGGGATGCCTAGATTGTATGCTCA 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 AGTTGGCCAGACCTGGGCTCTTTATGATACAGTGGATGGGATGCCTAGATTGTATGCTCA 575
Query 480 GATCAGAACA-GTTTCAGCTTCTGGGTTTGATGTTAGTGTCACATGGCTTGAGCCTGATC 538
||||| || | |||| | |||||| ||| |||||| |||||| ||||||||||||||||
Sbjct 576 GATCA-AAGAAGTTTTTGTTTCTGGTTTTAATGTTACTGTCACGTGGCTTGAGCCTGATC 634
Query 539 CATATGACGAGGAACCAATACAGAAGTATGAAAAAGACTTGCCTGTTTCTGTTGGTAGGT 598
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 635 CATATGACGAGGAACCAATACAGAGGTATGAAAAAGACTTGCCTGTTTCTGTTGGTAGGT 694
Query 599 TTAAAATTGGAAAAGATGAGACTATTAAAGATCACAGAAGGTTCTCTCACGAGGTTCATT 658
||||| |||||||||||||||||||||||||||||| |||||| |||||| ||||||||
Sbjct 695 TTAAACTTGGAAAAGATGAGACTATTAAAGATCACACAAGGTTTTCTCACTTGGTTCATT 754
Query 659 GCAATGAAGTAACTAGCGCGGGTAAATTCAGTTTATATCCAAGAAAAGGAGAGACATGGG 718
||||| ||| || |||||||||||||||| || |||| ||||||| ||||||||||||||
Sbjct 755 GCAATAAAGGAAGTAGCGCGGGTAAATTCTGTATATACCCAAGAATAGGAGAGACATGGG 814
Query 719 CTATCATCAAGGGTCGCTACAAGAT-T---A--A-GTA-CTCGGAAATTAATTGGTTAGC 770
||||| |||||||||||||||| || | | | | | || || || || ||||||||
Sbjct 815 CTATCTTCAAGGGTCGCTACAA-ATCTCTCATGACG-AGCTTTGACATCAACTGGTTAGC 872
Query 771 TGATGCCAATTCTCCAAATAAATATCAGTATGCATTTGTCGAAATCGTGTCAGAAAATGC 830
|||| || |||||| ||||||||||| |||||||||||||||||||||||| ||||
Sbjct 873 TGATCCCGGTTCTCCCTGGAAATATCAGTACGCATTTGTCGAAATCGTGTCAGAAGATGC 932
Query 831 TGGACCAAGGGAACATTTATCT 852
|||| |||| || | |||||||
Sbjct 933 TGGATCAAGTGACCCTTTATCT 954
> AT5G18720.1 | Symbols: | Domain of unknown function (DUF3444)
| chr5:6244005-6246227 FORWARD LENGTH=1838
Length=1838
Score = 174 bits (94), Expect = 2e-42
Identities = 183/224 (82%), Gaps = 13/224 (6%)
Strand=Plus/Plus
Query 378 TTTCAATGACTTTGA-TAAGCTGAGGAAAGTAAGC-AATTTTGCAGTTGGCCAGACTTGG 435
||| || |||||| | |||||||||| ||| |||| || ||| |||||| ||||| |||
Sbjct 319 TTT-AACGACTTT-AGTAAGCTGAGGGAAG-AAGCAAACTTTAAAGTTGGTCAGACCTGG 375
Query 436 GCTCTTTATGATACAGTGGATGGGATGCCTAGATTGTATGCTCAGATCAG-AACAGTTTC 494
|| |||||||||||| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 376 GCGCTTTATGATACAATGGATGGGATGCCTAGATTGTATGCTCAGATCAGGAA-AGTTTC 434
Query 495 AGCTTCTGGGTTTGATGTTAGTG-TCACATGGCTTGAGCCTGATCCATATGACGAGGAAC 553
|||| || | |||| | ||| || | |||| || ||||| ||| || |||| ||| ||
Sbjct 435 AGCTCCTTGTTTTGGTCTTA-TGATTACATATCTAGAGCCAGATTCAAATGATGAGAAAG 493
Query 554 CAA-TACAGAAG-TATGAAAAAGACTTGCCTGTTTCTGTTGGTA 595
| | || | | | |||||||||||||||||||||||||||||
Sbjct 494 -AGCTCCA-ATGGTTTGAAAAAGACTTGCCTGTTTCTGTTGGTA 535
> AT5G18730.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular
chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609);
BEST Arabidopsis thaliana protein match is: Domain of
unknown function (DUF3444) (TAIR:AT5G18740.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr5:6246763-6249405 FORWARD LENGTH=2405
Length=2405
Score = 128 bits (69), Expect = 2e-28
Identities = 176/226 (78%), Gaps = 14/226 (6%)
Strand=Plus/Plus
Query 378 TTTCAATGACTTTGATAAGCTGAGGAAAGTAAG-CAATTTTGCAGTTGGCCAGACTTGGG 436
||| ||||||||||||| ||||||| ||| || || |||| || ||| || || ||||
Sbjct 740 TTT-AATGACTTTGATAGGCTGAGGGAAG-GAGTAAAGTTTGAAGCTGGTCAAACCTGGG 797
Query 437 CT-CTT-T-ATGATACAGTGGATGGGATGCCTAGATTGTATGCTCAGATCAGAACAGTTT 493
|| || | || |||| |||||| ||||||||||||||||||||||||||||| |||||
Sbjct 798 CTATTTATAATAATACGGTGGATCAGATGCCTAGATTGTATGCTCAGATCAGAAAAGTTT 857
Query 494 CAGCTTCTGGGTTT-GATGTTAGTG-TCACATGGCTTGAGCCTGATCCATATGACGAGGA 551
||||| || | ||| | | |||| | | |||| || ||||| |||||| ||| ||| |
Sbjct 858 CAGCTCCTTGTTTTAG-TCTTAG-GATTACATATCTAGAGCCAGATCCAGATGGTGAGAA 915
Query 552 ACCAATACAGAA-G-TATGAAAAAGACTTGCCTGTTTCTGTTGGTA 595
| | || || | | ||| ||||||||||||||||||||||||
Sbjct 916 AG-AG-ACCCAATGGTTTGAGGAAGACTTGCCTGTTTCTGTTGGTA 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84085912875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5