BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488760
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18740.1 | Symbols: | Domain of unknown function (DUF3444) ... 1238 0.0
AT5G18730.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular... 1123 0.0
AT5G18720.1 | Symbols: | Domain of unknown function (DUF3444) ... 1000 0.0
AT5G18710.1 | Symbols: | Domain of unknown function (DUF3444) ... 198 1e-49
> AT5G18740.1 | Symbols: | Domain of unknown function (DUF3444)
| chr5:6249727-6252042 FORWARD LENGTH=2099
Length=2099
Score = 1238 bits (670), Expect = 0.0
Identities = 799/861 (93%), Gaps = 10/861 (1%)
Strand=Plus/Plus
Query 493 CAAGATGCTCAAGTGAGAGCTGCAGTGGGGATCTCTGGAAATCTTGAGGTGGATCAAAAC 552
||| ||||||||||| |||||| |||||| | |||| ||||||||||||||||||||||
Sbjct 508 CAA-ATGCTCAAGTGGGAGCTGTAGTGGGAAACTCTCGAAATCTTGAGGTGGATCAAAAT 566
Query 553 TCTGGTTTACGTGATTCAGGTTCAGGAGGTGCAGTACAACAAAACATTTTTGGATGTGCT 612
||||||||| ||||||||| |||||||||| ||||| |||||| |||| ||||| ||||
Sbjct 567 TCTGGTTTATGTGATTCAGAATCAGGAGGTGTAGTACCACAAAAGATTTCTGGATTTGCT 626
Query 613 GGTTTGAAATTTAACGACTTTGATAAGCTGAGGGAAGAAGTAAACTTTGAAGTTGGGCAG 672
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 627 GGTTTGAAATTTAACGACTTTGATAAGCTGAGGGAAGAAGTAAACTTCGAAGTTGGGCAG 686
Query 673 ACCTGGGCTGTTTATGATACAGTGGATGGGATGCCTAGATTGTATGCTCAGATCAGAAAA 732
||||||||| ||| |||| |||||||||| |||||||||||||||||| |||||| ||||
Sbjct 687 ACCTGGGCTATTTTTGATCCAGTGGATGGAATGCCTAGATTGTATGCTAAGATCATAAAA 746
Query 733 GTTTCAGCTCCTTGTTTTGAG-CTTAGGATTACATATCTAGAGCCAGATCCAAATGGTGA 791
||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||
Sbjct 747 GTTTCAGCTCCTTGTTTTG-GTCTTAGGATTACATATCTAGAGCCAGATCCAGATGGTGA 805
Query 792 GAAAGAGCTCCAATGGTTTGAAGAAGACTTGCCTGTTTCTGTTGGTATGTTCAGGCTTGG 851
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 806 GAAAGAGCTCCAATGGTTTGAAGAAGACTTGCCTGTTTCTGTTGGTAACTTCAGGCTTGG 865
Query 852 GGAAAATAAGAGCACACAAGATCGTTTAATATTTTCACATGTTATTCATTGCAATGAACG 911
|||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 866 GGAAAATAAGTGCACACAAGATCGTTCAATATTTTCACATGTGATTCATTGCAATGAATT 925
Query 912 AAGCAATACTCTATGTTTCAGCGTCACTTGTCGTTTCATCAAAACTTGTCATTTTAGTGT 971
|||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 926 AAGCAACACTCTTTGTTTCAGCGTCACTTGTCGTTTCATCAACACTTGTCATTTTAGTGT 985
Query 972 ATCTCCTAGGA-AAGGCGAGACATGGGCGCTTTTCAAGAACTGGGATATTAAGTGGTCTT 1030
||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 ATCCCCTA-GAGAAGGCGAGACATGGGCGCTTTTCAAGAACTGGGATATTAAGTGGTCTT 1044
Query 1031 CAGAGCCAGATTCTCACCGCAAATATGAGTATGAATTTGTCGAGATTCTGTCAGATTATT 1090
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1045 CAGAGCCAGATTCTCACCGCAAATATGAGTACGAATTTGTCGAGATTCTGTCAGATTACG 1104
Query 1091 CTGATGAAGGTGGTGCATATGTTGCATACTTGCATAAAGCAAAAGGGTTTGCTAGTGTGT 1150
||||||||| ||||| ||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1105 CTGATGAAGCTGGTGTATATGTTGCATACTTACATAAAGCAAAAGGATTTGCTAGTGTGT 1164
Query 1151 TCTTCCGAATGGGAACTGGTTATGAAGGCATATTTCGTATTTTACCTCAG-AGTTTGTAT 1209
|| ||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||
Sbjct 1165 TCCTCCGAATGGGAACTGGTTATGAAGGTATATTTCGTATTTTACCTC-GCAGTTTGTAT 1223
Query 1210 CGGTTCTCCCATAGGGTTCCTTCCTTCAAACTGACTGAAATTGAA-GGAAAAGGTATGCC 1268
||||||||||||||||| ||||||||||||||||| | | | ||| ||||||| ||||||
Sbjct 1224 CGGTTCTCCCATAGGGTCCCTTCCTTCAAACTGACAGGAGT-GAAAGGAAAAGATATGCC 1282
Query 1269 AAAAGATGCTTACGAGCTGGACAAAGCTGCATTACCAGAAACAATTGAAGAGATCATCGT 1328
|||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||||| ||
Sbjct 1283 AAAAGATGCTTATGAGCTAGACCAAGCTGCCTTACCAGAAACAATTGAAGAGATCATTGT 1342
Query 1329 GCCTTCAAACTCTGAGA-CAA 1348
||||||||||||||||| |||
Sbjct 1343 GCCTTCAAACTCTGAGAGCAA 1363
Score = 468 bits (253), Expect = 1e-130
Identities = 285/300 (95%), Gaps = 3/300 (1%)
Strand=Plus/Plus
Query 1597 GTTGAAATTCTTGATGACACTTTGGACTATAAGGTCCAACTGCTGGAGTATGAATCCGTT 1656
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1803 GTTGAAGTTCTTGATGACACTTTGGACTATAAGGTCCAACTGCTGGAGTACGAATCCGTT 1862
Query 1657 CatgatgatgatgatgatgatgatgatgGAACTGGGAATAGGTTGTTCAGGGCATGTACG 1716
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 1863 CATGATGATGATGATGATGACGATGA---AAATGGGAATAGGTTGTTCAGGGCATGTACG 1919
Query 1717 GAGTATACTTATAACGAGGATGAAGGGTCGGAACCAATATTTACGATCCCAAAGTCGGAA 1776
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1920 GAGTATACTTATAACGAGGCTGAAGGGTCCGAACCAATATTTACGATCCCAAAGTCGGAA 1979
Query 1777 AGGATCAGATTCTCGAATAAGGTTCCTGCTTCGCGTGTAACCAAAGAGATGCTTGGAGAG 1836
|| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1980 AGAATCAGATTCTCGAATAAGGTTCCTGCTTCTCGTGTAACCAAAGAGATGCATGGAGAG 2039
Query 1837 TTAAAAGAGTTTTTAAGTGTTGATTATAGGGCAACACCTATAAACGTCATACACTGTTGA 1896
||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 2040 TTAAAAGAGTTTTTAAGTGTTGATTATAGGGCAACCCCTATAAATGTTATACACTGTTGA 2099
Score = 298 bits (161), Expect = 1e-79
Identities = 180/189 (95%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 1354 AGTGGTTATGATGATTTGCCTCTCTACTATGGTAGGATTCAGAAGATAACTTTTACTCAT 1413
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1443 AGTGGTTATGATGATTTGCCTCTGTACTATGGTAGGATTCAGAAGATCACTTTTACTCAG 1502
Query 1414 GCATTTAAGCAGGACCCGGTAATTAAACTACACATTGGTCGGCTAAAGGCTACCCGTTCC 1473
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1503 GCATTTAAGCAGGACCCTGTAATTAAACTACACATAGGTCGGCTAAAGGCTACCCATTCC 1562
Query 1474 CCTAAGGATGTTGTCGACTGGGAAGAC-GGACAAATGCCTGTTGGTTGTGGAACATTCTA 1532
|||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1563 CCTAAGGATGTTATCGACTGGGAAGACAGG-CAAATGCCTGTTGGTTGTGGAACATTCTA 1621
Query 1533 CTCAAGAAA 1541
|||||||||
Sbjct 1622 CTCAAGAAA 1630
Score = 257 bits (139), Expect = 2e-67
Identities = 192/216 (89%), Gaps = 9/216 (4%)
Strand=Plus/Plus
Query 1 TCTAGAGAAGAAAGTTGTCTTCTTGAGTGTCTATTTTGTTTCACGATGGATGACACTGTA 60
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 75 TCTAGAGAAGAAAGTTGTCTTCTTGAGTGTCTATTTTGTTTGATGATGGATGACACTGTG 134
Query 61 AATGAGCTTCTAAGAAGGAAAAAAGCTGTCTTGAATCATCAAATCAGGAGTGATTTGGTT 120
|||||||||||||||||||| ||||||||| | |||||||| |||| |||||||||||||
Sbjct 135 AATGAGCTTCTAAGAAGGAAGAAAGCTGTCCTAAATCATCAGATCAAGAGTGATTTGGTT 194
Query 121 G--T--A---T--CGAATCGTCAGGAAAAAGCTCAAGCTTTCTCCTTGATACAACAGAAA 171
| | | | |||||| |||||||||| ||||||||||||||||| |||||||||||
Sbjct 195 GCATCCACACTTGCGAATCATCAGGAAAAACCTCAAGCTTTCTCCTTGCTACAACAGAAA 254
Query 172 GATGTCCCAACTAAAAGTCCCGGCACAAATTTCAGT 207
||||||| |||||| ||||||||||| ||||||||
Sbjct 255 GATGTCCAAACTAAGAGTCCCGGCACGCATTTCAGT 290
> AT5G18730.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular
chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609);
BEST Arabidopsis thaliana protein match is: Domain of
unknown function (DUF3444) (TAIR:AT5G18740.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr5:6246763-6249405 FORWARD LENGTH=2405
Length=2405
Score = 1123 bits (608), Expect = 0.0
Identities = 783/866 (90%), Gaps = 18/866 (2%)
Strand=Plus/Plus
Query 491 AACAAG-ATGCTCAAGTGAGAGCTGCAGTGGGGATCTCTGGA-AATCTTGAGGTGGATCA 548
|||| | ||||||||||| ||| |||| ||||||||||| | |||||||||| ||| |
Sbjct 608 AACATGAATGCTCAAGTGGGAGTTGCAATGGGGATCTCT-CAGAATCTTGAGGCAGAT-A 665
Query 549 A-AACTCTGGTTTACGTGATTCAGGTTCAGGAGGTGCAGTACAACAAAACATTTTTGGAT 607
| |||||| ||| ||||||||||||||| ||||||||||| |||||| |||| |||||
Sbjct 666 ATAACTCTTTTTTGTGTGATTCAGGTTCAGCAGGTGCAGTACCACAAAAGATTTCTGGAT 725
Query 608 GTGCTGGTTTGAAATTTAACGACTTTGATAAGCTGAGGGAAGAAGTAAACTTTGAAGTTG 667
||||||||||||||||||| |||||||||| ||||||||||| |||||| ||||||| ||
Sbjct 726 GTGCTGGTTTGAAATTTAATGACTTTGATAGGCTGAGGGAAGGAGTAAAGTTTGAAGCTG 785
Query 668 GGCAGACCTGGGCT-GTT-T-ATGATACAGTGGATGGGATGCCTAGATTGTATGCTCAGA 724
| || ||||||||| || | || |||| |||||| |||||||||||||||||||||||
Sbjct 786 GTCAAACCTGGGCTATTTATAATAATACGGTGGATCAGATGCCTAGATTGTATGCTCAGA 845
Query 725 TCAGAAAAGTTTCAGCTCCTTGTTTTGAG-CTTAGGATTACATATCTAGAGCCAGATCCA 783
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 846 TCAGAAAAGTTTCAGCTCCTTGTTTT-AGTCTTAGGATTACATATCTAGAGCCAGATCCA 904
Query 784 AATGGTGAGAAAGAG-CTCCAATGGTTTGAAGAAGACTTGCCTGTTTCTGTTGGTATGTT 842
|||||||||||||| | |||||||||||| ||||||||||||||||||||||||| ||
Sbjct 905 GATGGTGAGAAAGAGAC-CCAATGGTTTGAGGAAGACTTGCCTGTTTCTGTTGGTAAATT 963
Query 843 CAGGCTTGGGGAAAATAAGAGCACACAAGATCGTTTAATATTTTCACATGTTATTCATTG 902
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 964 CAGGCTTGGGGAAAATAAGAGCACACAAGATCGTTCCATATTTTCACATGTTATTCATTG 1023
Query 903 CAATGAACGAAGCAATACT-CTATGTTTCAGCGTCACTTGTCGTTTCATCAAAACTTGTC 961
||||||||| ||||| ||| | ||||||||| ||||||||||||||||| | ||||| |
Sbjct 1024 CAATGAACGGAGCAACACTAGT-TGTTTCAGCATCACTTGTCGTTTCATCGACACTTGCC 1082
Query 962 ATTTTAGTGTATCTCCTAGGAAAGGCGAGACATGGGCGCTTTTCAAGAACTGGGATATTA 1021
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 ATTTTAGTGTATCACCTAGAAAAGGCGAGACATGGGCGCTTTTCAAGAACTGGGATATTA 1142
Query 1022 AGTGGTCTTCAGAGCCAGATTCTCACCGCAAATATGAGTATGAATTTGTCGAGATTCTGT 1081
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 AGTGGTCTTCAGAGCTAGATTCTCACCGCAAATATGAGTATGAATTTGTCGAGATTCTGT 1202
Query 1082 CAGATTATTCTGATGAAGGTGGTGCATATGTTGCATACTTGCATAAAGCAAAAGGGTTTG 1141
||||||| | ||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1203 CAGATTACGCGGATGAAGCTGGTGTATATGTTGCATACTTGCATAAAGCAAAAGGGTTTG 1262
Query 1142 CTAGTGTGTTCTTCCGAATGGGAACTGGTTATGAAGGCATATTTCGTATTTTACCTCAG- 1200
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1263 CTAGTGTGTTCTTCCGAATGGGAACTGGTTATGAAGGTATATTTCGTATTTTACCTC-GC 1321
Query 1201 AGTTTGTATCGGTTCTCCCATAGGGTTCCTTCCTTCAAACTGACTGAA-ATTGAAGGAAA 1259
||||||||||||||||| ||||||||||||||||||||| |||||| | | ||||||||
Sbjct 1322 AGTTTGTATCGGTTCTCTCATAGGGTTCCTTCCTTCAAATTGACTGGAGAC-GAAGGAAA 1380
Query 1260 AGGTATGCCAAAAGATGCTTACGAGCTGGACAAAGCTGCATTACCAGAAACAATTGAAGA 1319
||| || |||| |||||||| |||||||| ||||||| ||||| |||||||| |||||
Sbjct 1381 CGGTGTGGCAAAGGATGCTTATGAGCTGGATGAAGCTGCGTTACCTGAAACAATCGAAGA 1440
Query 1320 GATCATCGTGCCTTCAAACTCTGAGA 1345
| ||||| ||||||||||||||||||
Sbjct 1441 GTTCATCATGCCTTCAAACTCTGAGA 1466
Score = 305 bits (165), Expect = 8e-82
Identities = 264/308 (86%), Gaps = 22/308 (7%)
Strand=Plus/Plus
Query 1594 ATTGTTGAAATTCTTGATGACACTTTGGACTATAAGGTCCAACTGCTGGA-GTATGAATC 1652
|||||||||||||||||||||||| |||||||||||||||||||||| || | | || |
Sbjct 1907 ATTGTTGAAATTCTTGATGACACTCTGGACTATAAGGTCCAACTGCT-GACGCAACAA-C 1964
Query 1653 C-G-TTCatgatgatgatgatgatgatgatgatgGAACTGGGAATAGGTTGTTCAGGGCA 1710
| | ||| ||||||| | | | ||||| ||||||| |||||||||| ||||||
Sbjct 1965 CTGTTTC-TGATGAT--CG-T-A--ATGAT-ATGGAAC-----ATAGGTTGTTTAGGGCA 2011
Query 1711 TGTACGGAGTATACTTATAACGAGGATGAAGGGTCGGAACCAATATTTACGATCCCAAAG 1770
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2012 TGTACGGAGTATACTTCTAACGAGGATGATGGGTCGGAACCAATATTTACGATCCCAAAG 2071
Query 1771 TCGGAAAGGATCAGATTCTCGAATAAGGTTCCTGCTTCGCGTGTAACCAAAGAGATGCTT 1830
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
Sbjct 2072 ACGGAAAGGATCAGATTCTCGAATAAGGTTCCTGCAACGCGTGTAACGAAAGAGATG-TA 2130
Query 1831 -GGAGAGTTAAAAGAGTTTTTAAGTGTTGA-TTATAGGGCAACACCTATAAACGTCATAC 1888
|||||||| |||| || || ||||| || ||||||||||||||||||||| ||||
Sbjct 2131 CGGAGAGTTGGAAGACAATTCAAAAGTTGAGTT-TAGGGCAACACCTATAAACGTTATAC 2189
Query 1889 ACTGTTGA 1896
||||||||
Sbjct 2190 ACTGTTGA 2197
Score = 239 bits (129), Expect = 8e-62
Identities = 171/191 (90%), Gaps = 4/191 (2%)
Strand=Plus/Plus
Query 1354 AGTGGTTATGATGATTTGCCTCTCTACTATGGTAGGATTCAGAAGATAACTTTTACTCAT 1413
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1550 AGTGGTTATGATGATTTGCCTCTATACTATGGTAGGATTCAGAAGATCACTTTTACTCAG 1609
Query 1414 GCATTTAAGCAGGACCCGGTAATTAAACTACACATTGGTCGGCTAAAGGCTACCCGTTCC 1473
|||||||||||||| |||||||||||||||||||| | |||||||||||||| |||| |
Sbjct 1610 GCATTTAAGCAGGATCCGGTAATTAAACTACACATAAGCCGGCTAAAGGCTACTCGTTTC 1669
Query 1474 CCT-AAGGATGTTGTCGACTGGGAAG-ACGGACAAATGCCTGTTGGTTGTGGAACATTCT 1531
||| || |||||| || ||| ||||| |||| ||||||||||||||||||||||||||
Sbjct 1670 CCTGAA-GATGTTATCAACT-GGAAGTACGGGGGAATGCCTGTTGGTTGTGGAACATTCT 1727
Query 1532 ACTCAAGAAAA 1542
|| | ||||||
Sbjct 1728 ACGCGAGAAAA 1738
Score = 89.8 bits (48), Expect = 9e-17
Identities = 52/54 (96%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 1549 CCTCAAACCTCCTTGGATGGCATTGAATATACCATTCTCCCCAAGATTGTTGAA 1602
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1784 CCTCAAACCTCCATGGATGGCATTGAATATACCATTCTCCCCAAGATTGGTGAA 1837
> AT5G18720.1 | Symbols: | Domain of unknown function (DUF3444)
| chr5:6244005-6246227 FORWARD LENGTH=1838
Length=1838
Score = 1000 bits (541), Expect = 0.0
Identities = 692/762 (91%), Gaps = 22/762 (3%)
Strand=Plus/Plus
Query 594 AAACATTTTTGGATGTGCTGGTT--T-GAAA-TTTAACGACTTTGA-TAAGCTGAGGGAA 648
|||||||| || ||||| | ||| | ||| |||||||||||| | |||||||||||||
Sbjct 288 AAACATTTCTGAATGTG-TTGTTGGTCCAAAGTTTAACGACTTT-AGTAAGCTGAGGGAA 345
Query 649 GAAGTAAACTTTGAAGTTGGGCAGACCTGGGCTG-TTTATGATACAGTGGATGGGATGCC 707
|||| ||||||| ||||||| ||||||||||| | ||||||||||| |||||||||||||
Sbjct 346 GAAGCAAACTTTAAAGTTGGTCAGACCTGGGC-GCTTTATGATACAATGGATGGGATGCC 404
Query 708 TAGATTGTATGCTCAGATCAGAAAAGTTTCAGCTCCTTGTTTTGAG-CTTAGGATTACAT 766
||||||||||||||||||||| |||||||||||||||||||||| | |||| ||||||||
Sbjct 405 TAGATTGTATGCTCAGATCAGGAAAGTTTCAGCTCCTTGTTTTG-GTCTTATGATTACAT 463
Query 767 ATCTAGAGCCAGATCCAAATGGTGAGAAAGAGCTCCAATGGTTTGAAGAAGACTTGCCTG 826
|||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 464 ATCTAGAGCCAGATTCAAATGATGAGAAAGAGCTCCAATGGTTTGAAAAAGACTTGCCTG 523
Query 827 TTTCTGTTGGTATGTTCAGGCTTGGGGAAAATAAGAGCACACAAGATCGTTTAATATTTT 886
|||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 524 TTTCTGTTGGTAACTTCAGGCTTGGGGAAAATAAGAGCACAAAAGATCGTTCAATATTTT 583
Query 887 CACATGTTATTCATTGCAATGAACGAAGCAATACTCTA--TGTTTCAGCGTCACTTGTCG 944
||||||||||||||||||||||||| ||| | || ||| ||||||||| ||||||||||
Sbjct 584 CACATGTTATTCATTGCAATGAACGGAGC-A-ACGCTAGTTGTTTCAGCATCACTTGTCG 641
Query 945 TTTCATCAAAACTTGTCATTTTAGTGTATCTCCTAGGAAA-GGCGAGACATGGGCGCTTT 1003
|||||||| |||| ||||||||||||||| |||| |||| || ||||| ||||||||||
Sbjct 642 TTTCATCAGTACTTATCATTTTAGTGTATCCCCTA-GAAATGGAGAGACTTGGGCGCTTT 700
Query 1004 TCAAGAACTGGGATATTAAGTGGTCTTCAGAGCCAGATTCTCACCGCAAATATGAGTATG 1063
||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 701 TCAAGAACTGGGATATTAAGTGGTCTTTAAAACCAGATTCTCACCGCAAATATGAGTATG 760
Query 1064 AATTTGTCGAGATTCTGTCAGATTATTCTGATGAAGGTGGTGCATATGTTGCATACTTGC 1123
|||||||| |||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 761 AATTTGTCAAGATTCTGTCAGATTACGCTGATGAAACTGGTGTATATGTTGCATACTTGC 820
Query 1124 ATAAAGCAAAAGGGTTTGCTAGTGTGTTCTTCCGAATGGGAACTGGTTATGAAGGCATAT 1183
||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct 821 ATAAAGCAAAAGGATTTGCTAGTGTGTTCTTTCGAATGGGAAGAGGTTATGAAGGTATAT 880
Query 1184 TTCGTATTTTACCTCAGAGTTTGTATCGGTTCTCCCATAGGGTTCCTTCCTTCAAACTGA 1243
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 881 TTCGTATTTTACCTCAGAGTTTGTATCGGTTCTCCCATAGGATTCCTTCCTT-----TGA 935
Query 1244 CTGAAATTGAAGGAAAAGGTATGCCAAAAGATGCTTACGAGCTGGACAAAGCTGCATTAC 1303
||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 936 CTGGAATTGAAGGAAAAGGTGTGCCAAAAGATGCTTACGAGCTGGACAAAGCTGCGTTAC 995
Query 1304 CAGAAACAATTGAAGAGATCATCGTGCCTTCAAACTCTGAGA 1345
|||||||||| |||||| |||||||||||| | |||||||||
Sbjct 996 CAGAAACAATCGAAGAGTTCATCGTGCCTTTAGACTCTGAGA 1037
Score = 113 bits (61), Expect = 5e-24
Identities = 105/125 (84%), Gaps = 8/125 (6%)
Strand=Plus/Plus
Query 1749 ACCAATATTTACGATCCC--AAAGTCGGAAAGGATCAGATTCTCGAATAAGGTTCCTGCT 1806
||||| || ||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1627 ACCAACATATACGATCCCGAAAAG--GGAAAGGATCAGATTCTCGAATAAGGTTCCTGCT 1684
Query 1807 TCGCGTGTAACCAAAGAGATGCTT-GGAGAGTTAAAAGAGTTTT-TAAGTGTTGATTATA 1864
|| |||||||||| ||||||| | |||||| || || | || |||||||||||| ||
Sbjct 1685 TCACGTGTAACCATAGAGATG-TACGGAGAGCTAGTGGA-TCTTATAAGTGTTGATTCTA 1742
Query 1865 GGGCA 1869
| |||
Sbjct 1743 GAGCA 1747
Score = 76.8 bits (41), Expect = 7e-13
Identities = 48/51 (94%), Gaps = 2/51 (4%)
Strand=Plus/Plus
Query 1548 TCCTCAAACCTCCT-TGGATGGCATTGAATATACCATTCTCCCCAAGATTG 1597
||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 1354 TCCTCAAACCT-CTATTGATGGCATTGAATATACCATTCTCCCCAAGATTG 1403
> AT5G18710.1 | Symbols: | Domain of unknown function (DUF3444)
| chr5:6241134-6243479 FORWARD LENGTH=1918
Length=1918
Score = 198 bits (107), Expect = 1e-49
Identities = 189/227 (83%), Gaps = 11/227 (5%)
Strand=Plus/Plus
Query 622 TTT-AACGACTTTGATAAGCTGAGGGAAGAAGTAAACTTTGAAGTTGGGCAGACCTGGGC 680
||| || ||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 474 TTTCAATGACTTTGATAAGCTGAGGGAAGAAGTACACTTTGAAGTTGGCCAGACCTGGGC 533
Query 681 TGTTTATGATACAGTGGATGGGATGCCTAGATTGTATGCTCAGATCAGAA-AAGTTTCAG 739
| ||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct 534 TCTTTATGATACAGTGGATGGGATGCCTAGATTGTATGCTCAGATCA-AAGAAGTTTTTG 592
Query 740 CTCCTTGTTTTGA-GCTTAG-GATTACATATCTAGAGCCAGATCCAAATGGTGAGAAAG- 796
| || ||||| | | ||| | | || | || ||||| |||||| ||| ||| ||
Sbjct 593 TTTCTGGTTTTAATG-TTACTG-TCACGTGGCTTGAGCCTGATCCATATGACGAGGAACC 650
Query 797 AGCTCCA-ATGGTTTGAAGAAGACTTGCCTGTTTCTGTTGGTATGTT 842
| | || | ||| |||| |||||||||||||||||||||||| |||
Sbjct 651 AA-TACAGA-GGTATGAAAAAGACTTGCCTGTTTCTGTTGGTAGGTT 695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93875019150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5