BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488761

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G18748.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   267    4e-71
  AT5G18750.1 | Symbols:  | DNAJ heat shock N-terminal domain-con...   130    5e-30


> AT5G18748.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:6254560-6254769 
REVERSE LENGTH=210
Length=210

 Score =  267 bits (144),  Expect = 4e-71
 Identities = 177/192 (92%), Gaps = 6/192 (3%)
 Strand=Plus/Plus

Query  8    agagagagagagagcgtcggaaactcaccggagttgagagaaagagagagagagaggaaa  67
            ||||| |||||||||||||||||||||||||||||  | |  ||| | ||||||||||||
Sbjct  22   AGAGACAGAGAGAGCGTCGGAAACTCACCGGAGTT-CG-G--AGAAACAGAGAGAGGAAA  77

Query  68   aggaggagaTA-GGTCACCGTCAAAGCTCACGTCGAGGCCTAACTGCCTCTTTGACTGGA  126
             |||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct  78   CGGAGGAGATAGGGT-ACCGTCAAAGCTCACGTCGATGCCCAACTGCCTCTTTGACTGGA  136

Query  127  ATCTGTCTTCGTCTTCGTTTGTGGGGAAACACCTCACGGTTTATATGGTTCTCTGGTTTT  186
            |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct  137  ATCTGTCTTCGTCTTCGTTTCTGGGGAGACACCTCACGGTTTATATGGTTCTCTGGTTTT  196

Query  187  ACTGTAATTTTT  198
            ||||||||||||
Sbjct  197  ACTGTAATTTTT  208


> AT5G18750.1 | Symbols:  | DNAJ heat shock N-terminal domain-containing 
protein | chr5:6254620-6257932 FORWARD LENGTH=2904
Length=2904

 Score =  130 bits (70),  Expect = 5e-30
 Identities = 81/86 (94%), Gaps = 2/86 (2%)
 Strand=Plus/Minus

Query  56   agagagaggaaaaggaggagaTA-GGTCACCGTCAAAGCTCACGTCGAGGCCTAACTGCC  114
            |||||||||||| |||||||||| ||| |||||||||||||||||||| ||| |||||||
Sbjct  85   AGAGAGAGGAAACGGAGGAGATAGGGT-ACCGTCAAAGCTCACGTCGATGCCCAACTGCC  27

Query  115  TCTTTGACTGGAATCTGTCTTCGTCT  140
            ||||||||||||||||||||||||||
Sbjct  26   TCTTTGACTGGAATCTGTCTTCGTCT  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8953640478


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5