BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488764
Length=1664
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18770.1 | Symbols: | F-box/FBD-like domains containing pro... 2047 0.0
> AT5G18770.1 | Symbols: | F-box/FBD-like domains containing protein
| chr5:6261352-6263436 FORWARD LENGTH=1784
Length=1784
Score = 2047 bits (1108), Expect = 0.0
Identities = 1442/1602 (90%), Gaps = 28/1602 (2%)
Strand=Plus/Plus
Query 1 ACAGAAGAGAGATTAAATGGTTAATCTCATTCGGAAGTTCGCAAAAAGGGTTGGTCGACC 60
||||||||||||||||||||| |||||||| ||||||||||||||| | ||||| ||||
Sbjct 59 ACAGAAGAGAGATTAAATGGTAAATCTCATGCGGAAGTTCGCAAAATCGATTGGTAGACC 118
Query 61 AGGAACACAAATTTGGAGAGGGGAAGATATGATAAGCTCATTACCTGATCATTTGCTATA 120
|||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 119 GGGAACAGAATTTTGGAGAGGGGAAGATATGATAAGCGCATTACCTGATCATTTGCTATG 178
Query 121 TCGTATACTTGGTTTTCTTACAACCGAGGAAGCTGTTTGGACGAGTGTTTTGTCTTCTAG 180
|| ||||||| ||||||| | || || ||| |||||| |||||||||||||||||||||
Sbjct 179 TCATATACTTATTTTTCTTTCTACTGATGAATCTGTTTTGACGAGTGTTTTGTCTTCTAG 238
Query 181 ATGGAGACATCTCTGGAAATGGGTTCCTACGTTAGAATTAGACACGTCTGATTTCCCATT 240
||||||| ||||||||||||||||||||| |||||| ||| |||| |||||||||||||
Sbjct 239 ATGGAGAAATCTCTGGAAATGGGTTCCTAGGTTAGACTTAAACACCTCTGATTTCCCATA 298
Query 241 CCCTTGTGACAAAACTTGTGCGGCTTTCATCGACAAGTTTCTGAAT-TTCCAGAGCGATT 299
|||| |||| |||||||||||||||||||||||||||||||||| || | | ||| |
Sbjct 299 CCCTAATGACGTAACTTGTGCGGCTTTCATCGACAAGTTTCTGAATCTT-TATAACGAAT 357
Query 300 CCTACTTGCGCGAATTCAAGTTAAGAATTGACC-A--T-A-----GAAGTGATGTATCTC 350
|||||||||| |||||||||||||||||||||| | | | | ||| |||||||||
Sbjct 358 CCTACTTGCGGGAATTCAAGTTAAGAATTGACCAAGCTAACTTTCGCAGTAATGTATCTC 417
Query 351 TTTATGAGCCGTGTCTCGGTGTAGTGATTAAGAAGCCCAATATTCGACATTTCCAAGTTG 410
|||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||
Sbjct 418 TTTATGAGCCGTGTCTTGGTGTAGTGATTAAGAAGCCCAACGTTCGGCATTTCCAAGTTG 477
Query 411 AGAGTGATCTGCTTGAACATTGGAACACCAATGAGATTCCATTAACCCTTTCTGCGTGCG 470
|||||||||||||||| |||||| ||| | |||||| | ||||||||||||||| |||
Sbjct 478 AGAGTGATCTGCTTGAGCATTGGTGCACTAGTGAGATACGATTAACCCTTTCTGCTTGCC 537
Query 471 AGGCATTGGTGTGCTTAAAGCTCCATTTAGTGA-GGCTGAATGATTTTGAGTCTCTTTCT 529
|||||||||| |||||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct 538 AGGCATTGGTATGCTTAAAGCTCCATTTAGT-ATGGCTGAATGACTTTGAGTCTCTATCT 596
Query 530 TTACCATGTCTCAAGATCATGTACTTGGAAGACGTTTTCTTTCCTAGCGATGCGGCTGTA 589
|| || |||||||||||||||||||||||||||||| | ||||||||||||||||||| |
Sbjct 597 TTGCCCTGTCTCAAGATCATGTACTTGGAAGACGTTGTATTTCCTAGCGATGCGGCTGCA 656
Query 590 GAGATGCTAATCTCTTGCTCTCCGGTTCTTGAAGATTTAAAAAT-ATCTCTCAATAGATA 648
|||| ||||||||| ||||||||||||||||||||||||||| | | | ||| ||||| |
Sbjct 657 GAGACGCTAATCTCGTGCTCTCCGGTTCTTGAAGATTTAAAACTAAGC-CTCCATAGAGA 715
Query 649 TGATGATGTCGTTGTTTTACGTGTCTACTCACAGTCGCTAAAGAGCTTCACTCTAAAACG 708
||||| ||| |||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 716 TGATGTTGTAGTTGTTCTACGTGTCTACTCACAGTCACTAAAGAGCTTCACTCTAAAACG 775
Query 709 GAAGGATCCTGTTGATGCTATAAACGGTGCACATACAGTGTTGGTCGATACTCCGAGGCT 768
| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GGCGGTTCCTGTTTATGCTATAAACGGTGCACATACAGTGTTGGTCGATACTCCGAGGCT 835
Query 769 TGAGTATATGAGTCTCATGGATTACCAATTCAAAAGCTTCAAGATATTAAGTATGAGTGA 828
|| ||||||||||||||| ||||||||||||||||||||||||||| | || ||||||||
Sbjct 836 TGTGTATATGAGTCTCATAGATTACCAATTCAAAAGCTTCAAGATAATCAGCATGAGTGA 895
Query 829 CTCTGTCAAGGTTGATCTTGATGTCAACTTTGAGCTGATGCGTGAT-AACTTATCGGAAA 887
|| |||||||||||||||||||||| ||||||| |||||||||||| || ||||||||||
Sbjct 896 CTATGTCAAGGTTGATCTTGATGTCGACTTTGAACTGATGCGTGATGAA-TTATCGGAAA 954
Query 888 GAAATATCATCTATAATCTTCTCAACAATTTTTCAGGTGTTAGAGATGTGACCATCTCAT 947
||||||| ||||| ||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 955 GAAATATTGTCTATGATCTTCTCAACAATTTTTCAGGTGTTAGAAATATGACCATCTCGT 1014
Query 948 GGTA-AACTCTTAAGTTTATCTATAGTTTGCAGGACATGAACCCACTACCCAAATTTCAC 1006
|| | |||||||||||||||| |||| || || |||||||||||||||||||||||||
Sbjct 1015 GG-ACAACTCTTAAGTTTATCCATAGATTCCATGACATGAACCCACTACCCAAATTTCGT 1073
Query 1007 GACTTGACCCGTTTGCGTGCTACTATGTTCTCGA-ACGCCTCTCTGGAAGTGTTGCCAAT 1065
|||||||||||||||||||| ||||||| ||| | ||||||||||||||||||||| |||
Sbjct 1074 GACTTGACCCGTTTGCGTGCAACTATGTCCTC-AGACGCCTCTCTGGAAGTGTTGCGAAT 1132
Query 1066 CGTTCTTGAGAGCTGCCCGAAGCTGAAACAC-TTCACCTTGGTAATGGAATTGGTTAATG 1124
||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||
Sbjct 1133 CGTTCTTGAGAGCTGCCCGAAGCTGAAACACTTTCA-CTTCACCTTGGAATTGGTTAATG 1191
Query 1125 ATTATCCAGTGGCAGTAATAACTAGACTCTC-AAATGTGCTGTCTCATTGTTTGGTATCG 1183
||| ||||| ||||||||||||| || |||| | | ||| | ||| |||||||||||
Sbjct 1192 ATTTTCCAGAGGCAGTAATAACTGGATTCTCGAGA-GTGTTACCTCGTTGTTTGGTATTT 1250
Query 1184 TCTCTTGAAACCGTTGAAATGGAAAGCCCGATCACGGAGAAAGCAACAGAGCTGAAACTG 1243
|| |||||| ||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1251 TCCCTTGAATCCGTTGAAATGGAAAGCCCGATCACGGAGAAAGCAACGGAACTGAAACTG 1310
Query 1244 GTTAGATACTTTCTGGAGAACTCAGCAACACTCAAGAAGCTTGTTCTACGTCTGAATCAT 1303
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1311 GTAAGATACTTTCTGGAGAACTCAGCAACACTCAAGAAGCTTGTTCTACTTCTGAATCAT 1370
Query 1304 GAGTCTACTGGAGAGAAACACGAGCCTGGTGTCTTGAAACAACTCATTGAATCTCCAAGA 1363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 GAGTCTACTGGAGAGAAACACGAGCCTGGTGTCTTGAAACAACTCATTGAATCTCCAAGA 1430
Query 1364 CGTTCTAGTTTGTGTCAATTTGAAGTTCTTCCAGTGCCTCCAAATCCGGAACCGTGGTGG 1423
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1431 CGCTCTAGTTTGTGTCAATTTGAAGTTCTTGCAGTGCCTCCAAATCCGGAACCGTGGTGG 1490
Query 1424 ATTTATGTAAAACCACAGAGGTTTCTTTAGTGCTATTGCTGATGAAATTCTCATGGCTTC 1483
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1491 ATTTATGTAAAACCCCAGAGGTTTCTTTAGTGCTATCGCTGATGAAATTCTCATACCTTC 1550
Query 1484 CTTTTATGTTGCTCTGTTTTTGTTATGTCTATGTTGTAACCTACATCAAAGTTGCATTCG 1543
|||| ||||| |||| ||||| ||| |||||||||||||||||||||||||||||||| |
Sbjct 1551 CTTT-ATGTTACTCTATTTTTATTACGTCTATGTTGTAACCTACATCAAAGTTGCATTTG 1609
Query 1544 ACAAAGGGAGGCTAGACGGTCTAGTCCAAAACTTTACCACTA 1585
||||||| ||| ||||||||||||||||| ||| ||||||
Sbjct 1610 ACAAAGGAAGGG--GACGGTCTAGTCCAAAAGTTTGCCACTA 1649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82228492710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5