BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488766

Length=564
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G18800.1 | Symbols:  | Cox19-like CHCH family protein | chr5...   808    0.0  


> AT5G18800.1 | Symbols:  | Cox19-like CHCH family protein | chr5:6267078-6268638 
FORWARD LENGTH=670
Length=670

 Score =  808 bits (437),  Expect = 0.0
 Identities = 481/502 (96%), Gaps = 3/502 (1%)
 Strand=Plus/Plus

Query  1    CCGTCCGACTCACTGGAGAAGAAGAAGAAGATCCAAATCGATCCGTTGAAAAGTTTCTCC  60
            ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  5    CCGTCGGACTCAGTGGAGAAGAAGAAGAAGATCCAAATCGATCCGTTGAAAAGTTTCTCC  64

Query  61   A-TTCGGATTCTGGTTTAGGGCTTTCGAATTT-CTAAGCGATGTCGAGTGCGGTGGACGC  118
            | ||||||||||||||||||  |||||||||| ||  |||||||||||||||||||||||
Sbjct  65   ATTTCGGATTCTGGTTTAGGAATTTCGAATTTGCTGTGCGATGTCGAGTGCGGTGGACGC  124

Query  119  TACGGGTAATCCGATCCCTACGTCGGCGGTGTTGACGGCATCAGCGAAGCATATAGGTAT  178
            |||||| || ||||||||||| |||||||| || ||||| ||||||||||||||||||||
Sbjct  125  TACGGGAAACCCGATCCCTACTTCGGCGGTTTTAACGGCGTCAGCGAAGCATATAGGTAT  184

Query  179  GCGGTGTATGCCGGAGAATGTTGCGTTCCTCAAATGCAAGAAGAATGATCCAAACCCAGA  238
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  185  GAGGTGTATGCCGGAGAATGTTGCGTTCCTCAAATGCAAGAAGAATGATCCAAACCCAGA  244

Query  239  GAAATGCCTCGACAAAGGTCGTGACGTCACTCGCTGCGTGCTTGGCTTGCTGAAGGATCT  298
            ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  245  GAAGTGTCTCGACAAAGGTCGTGACGTCACTCGCTGCGTGCTTGGCTTGCTGAAGGATCT  304

Query  299  TCACCAGAAGTGCCAAAAGGAGATGGATGATTATGTTGGGTGTATGTATTACTACACAAA  358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  305  TCACCAGAAGTGCCAAAAGGAGATGGATGATTATGTTGGGTGTATGTATTACTACACAAA  364

Query  359  CGAGTTTGATCTGTGTAGGAAAGAGCAAGAAGCCTTCGAGAAAGTGTGCCCCTTGAAATG  418
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  365  CGAGTTTGATCTGTGTAGGAAAGAGCAAGAAGCCTTCGAGAAAGTGTGTCCCTTGAAATG  424

Query  419  ATAATCACAAGTTCTTGTCATGTTTTGATTTGTATCTCCCTAATAAAGCAAAATGTTCAT  478
            | ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct  425  AGAATCACAAGTTCTTGTCATGTTTTGATTTGTATCTCA-TAATAAAGCAAAATGTTCAT  483

Query  479  TTTTGAATGAGCTTTACTCTCT  500
            ||||||||||||||||||||||
Sbjct  484  TTTTGAATGAGCTTTACTCTCT  505



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27076205233


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5