BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488768
Length=1898
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18820.1 | Symbols: EMB3007 | TCP-1/cpn60 chaperonin family ... 2870 0.0
> AT5G18820.1 | Symbols: EMB3007 | TCP-1/cpn60 chaperonin family
protein | chr5:6271489-6274327 FORWARD LENGTH=1962
Length=1962
Score = 2870 bits (1554), Expect = 0.0
Identities = 1768/1870 (95%), Gaps = 19/1870 (1%)
Strand=Plus/Plus
Query 4 TAAAAATCAAAACCCTTCGATAAACCTCCCTAACAACCCGGAGGAGA--CGAAATGTTCG 61
|||||||||||||||||||||||||||||| | | ||| || | |||||||||||
Sbjct 10 TAAAAATCAAAACCCTTCGATAAACCTCCCGGAGGA-GAGGA-GACACCCGAAATGTTCG 67
Query 62 CCGTTTCACCGTCGTCCTTCTCGCCGACAACCATATCTCCGAGCCGCAGTGGACAGAGGA 121
|||| ||||||||||| ||||||||||||||||| |||||| |||| |||||||||||||
Sbjct 68 CCGTATCACCGTCGTCATTCTCGCCGACAACCATTTCTCCGCGCCGTAGTGGACAGAGGA 127
Query 122 ACAAACCTCGAAAATTCTCGGTGGTGAGAGCAGGAGCTAAGAGAATACTGTACGGAAAAG 181
|| |||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 128 ACGAACCTCGAAAATTCTCGGTGGTGAGAGCTGGAGCTAAGAGAATACTATACGGTAAAG 187
Query 182 ATAGCAGAGAGGCACTCCAAGCCGGAATCGATAAGTTAGCTGATGCTGTTTCCATCACCT 241
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 ATAGCAGAGAGAAACTCCAAGCCGGAATCGATAAGTTAGCTGATGCTGTTTCCATCACCT 247
Query 242 TAGGTCCTAGAGGGCGTAATGTAGTGCTTGCTGAAAAAGATACAATCAAAGTGATTAACG 301
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 TAGGCCCTAGAGGGCGTAATGTAGTGCTTGCTGAAAAAGATACAATCAAAGTGATTAACG 307
Query 302 ATGGTGTCACCATTGCTAAATCTATTGAGCTTCCTGACACGATTGAGAACGCTGGAGCAA 361
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 308 ATGGTGTCACCATTGCTAAATCTATTGAGCTTCCTGACACTATTGAGAACGCTGGAGCAA 367
Query 362 CATTAATCCAAGAGGTTGCGATTAAAATGAATGACTCAGCGGGTGATGGGACAACCACTG 421
||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 368 CATTAATCCAAGAGGTTGCGATTAAAATGAACGAATCAGCGGGTGACGGGACAACCACTG 427
Query 422 CAATCATTTTGGCTAGAGAAATGATCAAAGCTGGTTCTTTGGCTATTGCTTTTGGAGCTA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 CAATCATTTTGGCTAGAGAAATGATCAAAGCTGGTTCTTTGGCTATTGCTTTTGGAGCTA 487
Query 482 ATGCTGTTGCTGTGAAGAATGGAATGAATAAGACTGTTAAAGAGTTGGTCAGGGTGTTGC 541
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 ATGCTGTTTCTGTGAAGAATGGAATGAATAAGACTGTTAAAGAGTTGGTCAGGGTGTTGC 547
Query 542 AGATGAAAAGTATTCCTG-TCAAAGGGAAGAATGATGTTAAAGCCGTGGCTTCAATCTCT 600
|||||||||||||||||| || |||||||||||||| ||||||| |||||||||||||||
Sbjct 548 AGATGAAAAGTATTCCTGTTC-AAGGGAAGAATGATATTAAAGCTGTGGCTTCAATCTCT 606
Query 601 GCTGGCAACGATGAATTTGTGGGGAACTTGATTGCTGAAACTGTGGAAAAGATTGGCCCT 660
||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 607 GCTGGTAACGATGAATTTGTGGGGAATTTGATTGCTGAGACTGTGGAAAAGATTGGCCCT 666
Query 661 GATGGCGTCATCTCCATTGAAACATCTTCCACTTCAGAAACGTATGTTATAGTTGAGGAA 720
||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 667 GATGGTGTCATCTCCATTGAATCATCTTCCACTTCAGAAACGTCTGTTATAGTTGAGGAA 726
Query 721 GGAATGAAGTTTGACAAGGGCTATATGTCGCCTCATTTCATCACAAATCAGGAGAAATCT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 GGAATGAAGTTTGACAAGGGCTATATGTCGCCTCATTTCATCACAAATCAGGAGAAATCT 786
Query 781 ACTGTGGAATTCGACAAAGCTAAAATCCTTGTGACGGATCAAAAAATCACTTCAGCCAAA 840
|| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 787 ACGGTGGAATTCGACAAAGCTAAAATTCTTGTGACGGATCAGAAAATCACTTCAGCCAAA 846
Query 841 GAACTAGTTCCGTTACTGGAGAAAACCTCACAACTGAGTGTTCCGCTCCTTATAATTGCT 900
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 GAATTAGTTCCGTTACTGGAGAAAACCTCACAACTGAGTGTTCCGCTCCTTATAATTGCA 906
Query 901 GAAGATATCTCAGCAGAAGTGCTTGAGATACTGGTGGTGAACAAGAAGCAAGGTTTGATC 960
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 GAAGATATCTCTGCGGAAGTGCTTGAGATACTGGTGGTGAACAAGAAGCAAGGTTTGATC 966
Query 961 AATGTCGCTGTTGTGAAATGTCCTGGGATGTTGGATGGGAAAAAGGCTTTGCTGCAAGAC 1020
|||||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 967 AATGTCGCAGTTGTGAAATGTCCAGGAATGTTGGATGGGAAAAAGGCTTTGCTACAAGAC 1026
Query 1021 ATTGCACTCATGACAGGAGCTGATTATCTTTCCGGAGATTTAGGCATGACTCTCATGGGA 1080
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1027 ATTGCACTCATGACAGGAGCTGATTATCTTTCCGGAGATTTAGGCATGTCGCTCATGGGT 1086
Query 1081 GCAACTTCGGATCAGCTGGGAGTTTCTTGGAGAGTAGTAATTACAGCTAATTCAACAACT 1140
|||||||| ||||||||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct 1087 GCAACTTCAGATCAGCTGGGTGTTTCTCGTAGAGTAGTAATTACAGCTAATTCAACAACT 1146
Query 1141 ATAGTCGCGGACGCTTCAACTAAACCGGAGATTCAGGCAAGAATTGCTCAGATGAAGAAG 1200
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1147 ATAGTCGCAGACGCTTCTACTAAACCAGAGATTCAGGCAAGAATTGCTCAGATGAAGAAG 1206
Query 1201 GATCTAGCTGAGACAGATAATTCATATCTTTCaaaaaaaaTCGCAGAGAGAATTGCTAAG 1260
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1207 GATCTAGCTGAGACAGATAATTCATATCTTTCAAAAAAAATAGCAGAGAGAATTGCTAAG 1266
Query 1261 CTCACAGGAGGTGTGGCTGTAATAAAGGTGGGAGGTCACACTGAAACAGAACTTGAGGAC 1320
||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1267 CTCACAGGAGGCGTGGCTGTAATAAAGGTTGGAGGCCACACTGAAACAGAACTTGAGGAC 1326
Query 1321 AGAAAACTAAGAATAGAGGACGCGAAGAATGCTACATTTGCAGCCATGCGAGAAGGTATA 1380
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1327 AGAAAACTAAGAATAGAGGACGCGAAGAATGCTACATTTGCAGCCATGAGAGAAGGTATA 1386
Query 1381 GTTCCAGGTGGTGGTGCCACTTATATCCATCTTTTAGATGAGATACCGAGAATCAAGAAG 1440
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 GTTCCAGGTGGTGGTGCTACTTATATCCATCTTTTAGATGAGATACCGAGAATCAAGAAG 1446
Query 1441 AATCTAATGGAAGATTCATACGAACAAATAGGTGCAGATATTGTAGCAATGGCACTCA-T 1499
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1447 AATCTAATGGAAGATTCATACGAACAAATAGGTGCAGATATTGTAGCAATGGCACTCACT 1506
Query 1500 GGCACCTACAATGGCCATAGCAACCAATGCCGGGGTTGATGGATCAGTTGTGGTGCAGAA 1559
| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1507 G-CACCTGCAATGGCCATAGCAACCAATGCTGGGGTTGATGGATCAGTTGTGGTGCAGAA 1565
Query 1560 AACCAGAGAACTTC-AATGGAGAAGTGGTTATAATGCAATGTCTGGAAAGTATGAGGATC 1618
|||||||||||| | |||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1566 AACCAGAGAACT-CGAATGGAGAAGTGGTTACAACGCAATGTCTGGAAAGTATGAGGATC 1624
Query 1619 TTCTAAACGCTGGAATCGCAGATCCTTGTCGGGTTTCAAGATTCGCCCTCCAAAACGCGG 1678
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1625 TTCTAAACGCTGGAATCGCAGATCCTTGTCGGGTTTCAAGATTCGCCCTTCAAAACGCAG 1684
Query 1679 TTTCTGTTGCCGGCATTGTTCTCACGACTCAAGCAGTGCTTGTGGAGAAGATCAAGCAGC 1738
|||| |||||||||||| ||||||| ||||||||||| || ||||||||||||||||| |
Sbjct 1685 TTTCCGTTGCCGGCATTATTCTCACAACTCAAGCAGTACTCGTGGAGAAGATCAAGCAAC 1744
Query 1739 CTAAACCTGCCGTTCCTCAAGTTCCTGGCATACCCACCTCATGA--A-C-ACCACCAAAG 1794
|||||||||| |||||||||||||||||||||||||| |||| | | | ||||||||||
Sbjct 1745 CTAAACCTGCTGTTCCTCAAGTTCCTGGCATACCCACATCATAACCAACCACCACCAAAG 1804
Query 1795 GTGACAA-GCAG-A-AAAA-CCAAACTCTTT-CAGCCGATTTTGTCTGAATCGAAACCTA 1849
|| |||| | || | |||| ||||||||| | | || ||||||||| ||||| ||||||
Sbjct 1805 GTAACAAAGAAGCACAAAAACCAAACTCTCTACTGCAGATTTTGTCAGAATCTAAACCTT 1864
Query 1850 TGCTCaaaaa 1859
|||||| |||
Sbjct 1865 TGCTCACAAA 1874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93975420240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5