BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488771
Length=1653
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18840.1 | Symbols: | Major facilitator superfamily protein... 2412 0.0
AT2G48020.2 | Symbols: | Major facilitator superfamily protein... 117 4e-25
> AT5G18840.1 | Symbols: | Major facilitator superfamily protein
| chr5:6282881-6286707 FORWARD LENGTH=1830
Length=1830
Score = 2412 bits (1306), Expect = 0.0
Identities = 1446/1514 (96%), Gaps = 7/1514 (0%)
Strand=Plus/Plus
Query 1 CTCTCTCTTTCCTTGCAAATTTTCTGCTCTCAAAGAGTAAAGAGTTGGAGAGAGAGAAGA 60
|||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| ||
Sbjct 15 CTCTCTCTTTCCTTGCAAATTTTCAGCTCTCAAAGAGTTAAGAGTTAGAGAGAGAGAGGA 74
Query 61 TGGCAATTAGGGAAATCAAAGACGAAGAGAGGGGTGAGATAGT-ACATAAGGTAGAGGAG 119
|||| ||||||||||||||||| | |||||||||||| ||||| | |||||||||| |
Sbjct 75 TGGCCATTAGGGAAATCAAAGATGTAGAGAGGGGTGAAATAGTGA-ATAAGGTAGA--A- 130
Query 120 GGTCTAGGGAAACCATTTTTGACTCATCAAGATGATGAAAAAGAGAGTGAGAATAATGAA 179
| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 131 GATCTTGGGAAACCATTTTTGACTCATGAAGATGATGAAAAAGAGAGTGAGAATAATGAA 190
Query 180 TCCTATTTGATGGTTCTCTTCAGCACTTTTGTTGCTGTCTGTGGCTCCTTTGAGTTTGGC 239
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 191 TCATATTTGATGGTTCTCTTCAGTACTTTTGTTGCTGTCTGTGGCTCCTTTGAGTTTGGC 250
Query 240 TCTTGTGTTGGATACTCAGCGCCTACTCAGTCATCTATAAGACAAGATCTCAATCTCTCC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 TCTTGTGTTGGATACTCAGCGCCTACTCAGTCATCTATAAGACAAGATCTCAATCTCTCC 310
Query 300 CTTGCAGAGTTCTCAATGTTTGGATCCATCTTAACAATCGGTGCAATGCTTGGTGCTGTT 359
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 311 CTTGCAGAGTTCTCCATGTTTGGATCCATCTTAACTATCGGTGCAATGCTTGGTGCTGTT 370
Query 360 ATGAGTGGGAAAATTTCAGATTTTTCCGGCCGAAAAGGGGCTATGAGAACGTCAGCTTGC 419
||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||||||
Sbjct 371 ATGAGTGGGAAAATTTCAGATTTCTCCGGCCGAAAAGGGGCAATGAGGACATCAGCTTGC 430
Query 420 TTCTGCATTACAGGTTGGCTCGCTGTCTTCTTCTCCAAGGGTGCATTGTTACTTGATGTA 479
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 431 TTCTGCATTACAGGTTGGCTCGCTGTCTTCTTCACCAAGGGGGCATTGTTACTTGATGTA 490
Query 480 GGAAGGTTCTTTACAGGATTTGGAATTGGAGTTTTTTCTTATGTGGTCCCTGTGTACATT 539
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 491 GGAAGGTTCTTTACAGGATATGGAATTGGAGTTTTTTCTTATGTGGTCCCTGTGTACATT 550
Query 540 GCTGAGATATCTCCCAAGAATCTCCGAGGTGGACTCACAACACTGAACCAACTCATGATT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 GCTGAGATATCTCCCAAGAATCTCCGAGGTGGACTCACAACACTGAACCAACTCATGATT 610
Query 600 GTGATCGGCTCATCGGTTTCTTTCTTGATCGGATCTCTCATTTCTTGGAAAACTCTTGCC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 GTGATCGGCTCATCGGTTTCTTTCTTGATCGGATCTCTCATTTCTTGGAAAACTCTTGCC 670
Query 660 CTAACCGGACTTGCTCCCTGCATTGTTTTGTTCTTTGGTTTGTGCTTCATACCTGAATCT 719
|||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct 671 CTAACCGGACTTGCTCCCTGCATTGTTTTGCTCTTTGGCTTGTGCTTCATACCCGAATCT 730
Query 720 CCTCGATGGCTGGCAAAAGCAGGCCGTGAGAAAGAGTTTCGCTTAGCCCTGCAAAAGCTA 779
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 731 CCTCGATGGCTGGCAAAAGCAGGCCATGAGAAAGAGTTTCGCGTAGCCCTGCAAAAGCTG 790
Query 780 CGAGGAAAAGATGCAGATATCACAAATGAAGCAGAAGGTATTCAAGTCTCGATTCAAGCT 839
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 791 CGAGGAAAAGATGCAGATATCACAAATGAAGCAGACGGTATTCAAGTCTCGATTCAAGCT 850
Query 840 CTAGAGATTCTCCCACAAGCAAGAATTCAAGATCTTGTGTCCAAGAAATATGCTCGATCT 899
||||||||||| ||| |||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct 851 CTAGAGATTCTTCCAAAAGCAAGAATCCAAGACCTTGTGTCCAAGAAATATGGTCGATCT 910
Query 900 GTCATTATTGGTGTTTCCCTGATGGTATTCCAACAGTTTGTTGGAATCAATGGGATCGGA 959
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 GTCATCATTGGTGTTTCCCTGATGGTATTCCAACAGTTTGTTGGAATCAATGGGATCGGA 970
Query 960 TTCTACGCAAGCGAAACGTTTGTAAAAGCCGGATTTTCGTCTGGGAAACTCGGAACAATC 1019
||||||||||| |||||||||||||||||||||||| | ||||||||||| |||||||||
Sbjct 971 TTCTACGCAAGTGAAACGTTTGTAAAAGCCGGATTTACCTCTGGGAAACTAGGAACAATC 1030
Query 1020 GCAATCGCTTGTATTCAGGTTCCCATAACTGTTCTTGGGACAATCTTGATAGATAAATCT 1079
|| ||||||||| ||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 1031 GCTATCGCTTGTGTTCAGGTGCCAATAACTGTTCTTGGAACAATCTTGATAGATAAATCT 1090
Query 1080 GGACGAAGACCACTAATTATGATTTCAGCTGGTGGTATCTTCTTGGGGTGTATTCTCACA 1139
|||||||| |||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 1091 GGACGAAGGCCACTAATTATGATTTCAGCTGGTGGTATCTTCTTGGGATGCATACTCACA 1150
Query 1140 GGCACATCTTTCTTACTCAAGGGACAAAGCTTGTTGCTTGAATGGGTACCTACCTTAGCA 1199
|||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||
Sbjct 1151 GGCACATCTTTCTTACTCAAGGGACAGAGCTTGTTGCTTGAATGGGTCCCTTCCTTAGCC 1210
Query 1200 GTTGGAGGTGTACTTATCTATGTAGCTGCTTTCTCTATCGGAATGGGACCTGTTCCTTGG 1259
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1211 GTTGGAGGTGTACTTATCTATGTAGCTGCTTTCTCCATCGGAATGGGACCTGTTCCTTGG 1270
Query 1260 GTGATAATGTCTGAGATATTTCCGATAAACATTAAGGGGATCGCAGGAAGCTTAGTGGTA 1319
|||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct 1271 GTGATAATGTCTGAGATATTTCCGATAAACGTAAAGGGAATCGCAGGAAGCTTAGTGGTA 1330
Query 1320 CTAGTGAATTGGTCCGGTGCTTGGGCTGTTTCTTACACTTTCAACTTCCTCATGAGCTGG 1379
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 CTAGTGAATTGGTCTGGTGCTTGGGCTGTTTCTTACACTTTCAACTTCCTCATGAGCTGG 1390
Query 1380 AGCTCTCCAGGTACATTCTATATT-TACTCTGCTTTTGCAGCCGCAACGATAATCTTTGT 1438
||||||||||||||||||||| || ||||| ||||||||||| || |||||||| |||||
Sbjct 1391 AGCTCTCCAGGTACATTCTAT-TTGTACTCGGCTTTTGCAGCTGCGACGATAATATTTGT 1449
Query 1439 GGCGAAGATGGTGCCAGAGACGAAAGGGAAGACACTGGAAGAGATCCAAGCTTGTATTCG 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 GGCGAAGATGGTGCCAGAGACGAAAGGGAAGACACTGGAAGAGATCCAAGCTTGTATTCG 1509
Query 1499 AAGAGAAACATAAG 1512
||||||||||||||
Sbjct 1510 AAGAGAAACATAAG 1523
> AT2G48020.2 | Symbols: | Major facilitator superfamily protein
| chr2:19644255-19647180 FORWARD LENGTH=1751
Length=1751
Score = 117 bits (63), Expect = 4e-25
Identities = 120/148 (81%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 1239 GGAATGGGACCTGTTCCTTGGGTGATAATGTCTGAGATATTTCCGATAAACATTAAGGGG 1298
||||||||| | | || |||||| | ||||||||||||||||| ||||||| ||| ||
Sbjct 1312 GGAATGGGAGCAATGCCGTGGGTGGTCATGTCTGAGATATTTCCCATAAACA-TAAAAGG 1370
Query 1299 A-TCGCAGGAAGCTTAGTGGTACTAGTGAATTGGTCCGGTGCTTGGGCTGTTTCTTACAC 1357
| | |||||| || | | | || ||||| |||| || || |||||||||||||||||
Sbjct 1371 AGTAGCAGGAGGCATGGCGACGCTGGTGAACTGGTTTGGAGCGTGGGCTGTTTCTTACAC 1430
Query 1358 TTTCAACTTCCTCATGAGCTGGAGCTCT 1385
|||||||||||||||| ||||||||||
Sbjct 1431 TTTCAACTTCCTCATGTCCTGGAGCTCT 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81676286715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5