BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488772
Length=468
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18850.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 424 5e-118
> AT5G18850.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast
hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses -
0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:6286847-6287590
FORWARD LENGTH=667
Length=667
Score = 424 bits (229), Expect = 5e-118
Identities = 285/313 (91%), Gaps = 0/313 (0%)
Strand=Plus/Plus
Query 1 AATGGCATCTCCATCATCGTCACCGAAAACGAGAATCTGGTTCCGTACAGTGATCCTGAT 60
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||| | ||
Sbjct 49 AATGGCGTCTCCATCATCGTCACCGACAACAAGAATCTGGTTCCGTACAGTGATCTTAAT 108
Query 61 CTCTTTGATGGTGGTTCTCTTCTATGTTGGTCGTCCTCTTTACTGGAAGATCTCCGCCAC 120
| |||| ||||||||||||||||| ||||| |||||||| |||||||||||||| |||||
Sbjct 109 CGCTTTAATGGTGGTTCTCTTCTACGTTGGCCGTCCTCTCTACTGGAAGATCTCTGCCAC 168
Query 121 AATCCACGATATCCGCCACAACAAACAATCGGTCAGAGAAGGTATTTCTCAGATCGTACA 180
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 169 AATCCACGACATCCGCCACAACAAACAATCCGTCAGAGAAGGTATTTCTCAGATCGTACA 228
Query 181 CGAAGCGCAGAGATCGGTCGGATGGTATCACGAAGAGTCAGATTCAGGGTTCCGGGAAGG 240
||||||||||||||| || |||||||||||||| || || |||||||||||||| |||||
Sbjct 229 CGAAGCGCAGAGATCAGTGGGATGGTATCACGACGAATCGGATTCAGGGTTCCGAGAAGG 288
Query 241 TCACCACAAGAAATCAGGAGTCGCCGTATCTAGGAGGCTTCTCTTCGTTGGAGATCTGTG 300
|||| |||||||||| ||| ||||||| ||| |||||||||| |||| ||||||| |||
Sbjct 289 TCACAACAAGAAATCGGGAATCGCCGTCTCTCGGAGGCTTCTTTTCGCCGGAGATCAGTG 348
Query 301 AGAAATTTTCTCC 313
|||||||||||||
Sbjct 349 AGAAATTTTCTCC 361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22253727121
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5