BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488773
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18870.1 | Symbols: | Inosine-uridine preferring nucleoside... 1125 0.0
AT5G18860.1 | Symbols: | inosine-uridine preferring nucleoside... 130 2e-29
> AT5G18870.1 | Symbols: | Inosine-uridine preferring nucleoside
hydrolase family protein | chr5:6298386-6300289 FORWARD LENGTH=777
Length=777
Score = 1125 bits (609), Expect = 0.0
Identities = 718/769 (93%), Gaps = 14/769 (2%)
Strand=Plus/Plus
Query 1 CCACAAAGGTTTGTTCTAGTCGTCACCATTATTGGACTCTTAGGTCATGACCTCACATGT 60
|||| |||||| ||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 10 CCACGAAGGTTCATTCTAGTCGTCACCATTCTTGGACTCTTAGGTCATAACCTCACACAT 69
Query 61 GTTCTGTCTAGCCCACACCGTATTCTATTGGACACAGATGTCGACACAGACGACTTCATC 120
|||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 70 GTTCTGAATAGCCCACACCGTATTCTCTTGGACACAGATGTCGACACAGACGATTTCATC 129
Query 121 GCTCTGTTGTACCTCTTGAAGCTCAATAAAACAGAATTCGATCTAGTCGGGATTACATTA 180
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 130 GCTCTCTTGTACCTCTTGAAGCTCAACAAAACAGAATTCGATCTAGTCGGGATCACATTA 189
Query 181 AGTGCCAACGCTTGGACAAACGCAGGACATGGAGTGAATCATATATACGACATTCTTTAC 240
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 AGTGCCAATTCTTGGACAAACGCAGGACATGGAGTGAATCATATATACGACATTCTTTAC 249
Query 241 ATGATGGGTCGTGACGATATCCCCGTTGGTATTGGAGGTGAAGGTGGGATTCTCGATGAT 300
||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||| |||
Sbjct 250 ATGATGGGTCGTGACGATATCACCGTTGGTGTTGGAGGAGAAGGTGGGATTCTCGAAGAT 309
Query 301 GGTACTATTCTTCCTGACGTCGGTGGTTATCTTCCGATCATCGAGCAGGGGATGACAACA 360
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 310 GGTACTATTCTTCCTGACGTCGGTGATTATCTTCCGATCATCGAACAGGGGATGACAACA 369
Query 361 GCAGGAGGATGCAGATACAGACAATCCATTCCAAAAGGTC-T-T------GA----CTCC 408
|||||||||||||||||||||||||||||||||||||||| | | || ||||
Sbjct 370 GCAGGAGGATGCAGATACAGACAATCCATTCCAAAAGGTCGTATACAAAAGATTGACTCC 429
Query 409 AATTATGGATTTCGTAAACATTTTCTTCCTCTGGGGAACAGAAGATACACTCCTCTCGAG 468
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 430 AATTATGGATTTCGTAAACATTTTCTTCCTCAGGGGAACCGAAGATACACTCCTCTCGAG 489
Query 469 CAACCAACGGCACAAAAAGTAATCTTCGACAAAGTTTCTCAAGGTCCAATAAGCATCTTC 528
|||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||
Sbjct 490 CAACCAACGGCACAAAAAGTAATCGTCGACAAAGTTTCTGAAGGTCCAATCAGCATCTTC 549
Query 529 GTGATCGGTTCTCACACCAATCTCGCTCTCTTCATGATGTCAACTCCTTACCTCAAACAT 588
||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||
Sbjct 550 GTGATCGGTTCTCACACCAATCTAGCTCTCTTCATGATGTCAAATCCTCACCTCAAACAT 609
Query 589 AACATCCAACACATTTACGTTATGGGTGGTAGTGTACGCTGTCCAAACCCCACCGGATTC 648
||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct 610 AACATCCAACACATTTACGTTATGGGTGGTAGTGTACGCTGTCAAAACCCTAACGGATTC 669
Query 649 TGTGGGAACTTGTTCACAGATT-TCACAAGTAATCCTTACGCTGAATTCAACATCTTCAC 707
|| || |||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 670 TGCGGAAACTTGTTCACAGATTAT-ACAAGTAATCCTTACGCTGAATTCAACATCTTCAC 728
Query 708 TGATCCTTTCGCTGCTTACCAGGTGTTCCGATTACTATGGTTCCTTTAG 756
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 729 CGATCCTTTTGCTGCTTACCAGGTGTTCCGATTACTATGGTTCCTTTAG 777
> AT5G18860.1 | Symbols: | inosine-uridine preferring nucleoside
hydrolase family protein | chr5:6290676-6295811 FORWARD LENGTH=3250
Length=3250
Score = 130 bits (70), Expect = 2e-29
Identities = 81/86 (94%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 650 GTGGGAACTTGTTCACAGATT-TCACAAGTAATCCTTACGCTGAATTCAACATCTTCACT 708
|||| |||||||||||||||| | ||||||||||||||| ||||||||||||||||| ||
Sbjct 1084 GTGGAAACTTGTTCACAGATTAT-ACAAGTAATCCTTACTCTGAATTCAACATCTTCGCT 1142
Query 709 GATCCTTTCGCTGCTTACCAGGTGTT 734
||||||||||||||||||||||||||
Sbjct 1143 GATCCTTTCGCTGCTTACCAGGTGTT 1168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36721161457
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5