BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488774
Length=1219
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18900.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1832 0.0
AT3G06300.1 | Symbols: AT-P4H-2 | P4H isoform 2 | chr3:1907582-... 893 0.0
> AT5G18900.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr5:6304215-6306290
REVERSE LENGTH=1215
Length=1215
Score = 1832 bits (992), Expect = 0.0
Identities = 1150/1224 (94%), Gaps = 19/1224 (2%)
Strand=Plus/Plus
Query 1 TCATCACCGTTGAACACTTTCCCGAGAAAAAGCTTCTCTCATCGTCTTTTATTTTCCCGG 60
|||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||
Sbjct 1 TCATCACCGTTGAACACTTTCCCGAG-AAAAGC-TCTCTCA---TCTTTTATTTTCCCGG 55
Query 61 aaaaaaaaaaTCAAAATTTTTACTCTCTTCCGATCTCCTTTCCTTCTACATCTAGATCCA 120
||||||| ||| ||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 56 AAAAAAATAAT-TAAACTTTTACTCTCTTCCGATCTCCTTTCCTTGTACATCTAGATCCA 114
Query 121 AGCGATTTCGATGGCTC-ACCGTGGATTATTG-TTGTTGTTCTTTGCTATCTTCTCCGTC 178
|||| | |||||||||| | |||||||||||| || | |||||| |||||||||||||||
Sbjct 115 AGCGGTATCGATGGCTCGA-CGTGGATTATTGATT-TCGTTCTTCGCTATCTTCTCCGTC 172
Query 179 CTGCTTCAATCCTCCACTTCCCTGATTAGTTCCTCTAGCGTCTTCATCAATCCTTCCAAA 238
||||||||||| |||||||| ||||| ||||| |||||||||||| ||||||||||||||
Sbjct 173 CTGCTTCAATCTTCCACTTCTCTGATCAGTTCTTCTAGCGTCTTCGTCAATCCTTCCAAA 232
Query 239 GTCAAGCAGGTTTCATCGAAACCCAGGGCGTTTGTGTATGAAGGGTTTCTCACGGAATTG 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 GTCAAGCAGGTTTCATCGAAACCCAGGGCGTTTGTGTATGAAGGGTTTCTCACGGAATTG 292
Query 299 GAATGTGATCATATGGTTTCTCTTGCAAAAGCGAGCCTGAAGAGATCTGCTGTTGCTGAT 358
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 293 GAATGTGATCATATGGTCTCCCTTGCAAAAGCGAGCCTGAAGAGATCTGCTGTTGCTGAT 352
Query 359 AATGATAGTGGAGAGAGCAAATTCAGCGAGGTTCGAACCAGCTCTGGCACGTTTATCCCC 418
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 353 AATGATAGTGGAGAGAGCAAATTCAGCGAGGTTCGAACCAGCTCTGGCACCTTTATCTCC 412
Query 419 AAAGGAAAGGATCCCATTGTTTCTGGTATAGAAGACAAGATCTCCACTTGGACATTTCTT 478
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 413 AAAGGAAAGGATCCCATTGTTTCTGGTATAGAAGATAAGATCTCCACTTGGACATTTCTT 472
Query 479 CCAAAAGAAAACGGGGAAGATATTCAGGTATTGAGATACGAGCACGGACAAAAATACGAT 538
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 473 CCAAAAGAAAACGGGGAAGACATTCAGGTATTGAGATACGAGCACGGCCAAAAATACGAT 532
Query 539 GCTCACTTTGACTACTTTCATGACAAAGTCAACATTGTCCGTGGTGGACACCGCATAGCA 598
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 533 GCTCACTTTGATTACTTTCATGACAAAGTCAACATTGTCCGTGGTGGACATCGCATGGCA 592
Query 599 ACGATTCTTATGTATCTATCCAATGTGACGAAAGGTGGAGAAACCGTATTCCCTGATGCA 658
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 593 ACAATTCTTATGTATCTATCCAATGTGACGAAAGGTGGAGAAACTGTATTCCCTGATGCA 652
Query 659 GAGGTACCTTCTCGCCGAGTACTCTCTGAAAACAAAGAAGATCTTTCTGATTGTGCTAAG 718
||| ||||||||||||||||||| |||||||| |||||||| |||||||||||||| |||
Sbjct 653 GAGATACCTTCTCGCCGAGTACTATCTGAAAATAAAGAAGACCTTTCTGATTGTGCCAAG 712
Query 719 AGAGGAATCGCCGTGAAACCAAGGAAAGGGGATGCTTTGTTGTTCTTCAACCTCCACCCA 778
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 AGAGGAATTGCTGTGAAACCAAGGAAAGGGGATGCTTTGTTGTTCTTCAACCTCCACCCA 772
Query 779 GACGCAATTCCAGACCCATTGAGCCTTCACGGTGGATGTCCCGTGATCGAAGGAGAGAAA 838
|||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 773 GACGCAATCCCGGACCCATTGAGCCTTCACGGTGGATGTCCTGTGATAGAAGGAGAGAAA 832
Query 839 TGGTCGGCAACAAAGTGGATCCACGTGGACTCATTCGATAAGATTGTGACACCAAGCGGA 898
||||||||||| |||||||||||||| |||||||| |||| ||| |||||||||||||||
Sbjct 833 TGGTCGGCAACCAAGTGGATCCACGTAGACTCATTTGATAGGATCGTGACACCAAGCGGA 892
Query 899 AACTGCACGAATATGCACGAGAGCTGTGAGAGATGGGCAGTTCTTGGGGAATGCACAAAG 958
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 AACTGCACGGATATGAACGAGAGCTGTGAGAGATGGGCAGTTCTTGGGGAATGCACAAAG 952
Query 959 AATCCAGAGTACATGGTTGGAACTACAGAGCTTCCTGGCTATTGCAGGC-ATAGCTGTAA 1017
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 953 AATCCAGAGTACATGGTTGGAACTACAGAGCTTCCTGGCTATTGCAGGCGA-AGCTGTAA 1011
Query 1018 GGCTTGTTAGACTTGATTTTACCTCTTCTTCT-TCTTGTTCTGTGCCATAAAACTCTCAA 1076
|||||| ||||||| ||||||||||||||| | |||| || |||||| | | |||||||
Sbjct 1012 GGCTTGCTAGACTTTATTTTACCTCTTCTT-TGTCTTATTATGTGCCTTTA--CTCTCAA 1068
Query 1077 AGTTTTCTGttttttttCGTGTTTCT-TGTAGAGTTGTTGTCGTTAATGAACTTTGTTCT 1135
|||||||||||||||| || |||||| | |||||||||||||||| ||||| ||||||||
Sbjct 1069 AGTTTTCTGTTTTTTTCCGAGTTTCTCT-TAGAGTTGTTGTCGTTGATGAAATTTGTTCT 1127
Query 1136 AAGGGGAGTTTTGTAAAACTATAACTGTTCCTGAAAAGAATATAATGTAAACACATAGAT 1195
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1128 AAGGGGAGTTCTGTAAAACTATA-CTGTTCCTGAAAAGAATATAATGTAAACACATAGAT 1186
Query 1196 TCAGTCAAATACTTTATAGGTTAT 1219
|||||||||||||| |||||||||
Sbjct 1187 TCAGTCAAATACTTAATAGGTTAT 1210
> AT3G06300.1 | Symbols: AT-P4H-2 | P4H isoform 2 | chr3:1907582-1909804
FORWARD LENGTH=1191
Length=1191
Score = 893 bits (483), Expect = 0.0
Identities = 760/892 (85%), Gaps = 26/892 (3%)
Strand=Plus/Plus
Query 148 ATTGTTGTTGTTCTTTGCTATCTT-CTCCGTCCTGCTTCAATCCTCCACTTCCCTGATTA 206
||||||||||||| | ||||| || || |||| ||||||| || ||||||| |||||||
Sbjct 183 ATTGTTGTTGTTCGTCGCTATATTGCT-CGTCTTGCTTCAGTCTTCCACTTGTCTGATTA 241
Query 207 GTTCCT-CTAGCGTCT-TCATCAATCCTTCCAAAGTCAAGCAGGTTTCATCGAAACCCAG 264
||| || | || ||| ||||||||||||| |||||||| |||||||| ||||| |||||
Sbjct 242 GTT-CTCCAAG-TTCTATCATCAATCCTTCTAAAGTCAAACAGGTTTCGTCGAAGCCCAG 299
Query 265 GGCGTTTGTGTATGAAGGGTTTCTCACGGAATTGGAATGTGATCATATGGTTTCTCTTGC 324
||| |||||||||||||| ||| | ||||| ||||||||||||||| | | ||||||||
Sbjct 300 GGCATTTGTGTATGAAGGTTTTTTGACGGACTTGGAATGTGATCATCTAATCTCTCTTGC 359
Query 325 AAAAGCGAGCCTGAAGAGATCTGCTGTTGCTGATAATGATAGTGGAGAGAG-CAAATTCA 383
|||| || ||| |||||||||| ||||||||||| |||| ||| ||||| | || |||
Sbjct 360 GAAAGAGAATCTGCAGAGATCTGCGGTTGCTGATAACGATAATGGCGAGAGTC-AAGTCA 418
Query 384 GCGAGGTTCGAACCAGCTCTGGCACGTTTATCCCCAAAGGAAAGGATCCCATTGTTTCTG 443
| || ||||| |||||||| ||||| |||||| |||||||||||||||| |||||||| |
Sbjct 419 GTGATGTTCGTACCAGCTCCGGCACTTTTATCTCCAAAGGAAAGGATCCTATTGTTTCCG 478
Query 444 GTATAGAAGACAAGATCTCCACTTGGACATTTCTTCCAAAAGAAAACGGGGAAGATATTC 503
|||| || |||||| |||| || ||||||||||| |||||||||||||||||||| |||
Sbjct 479 GTATCGAGGACAAGCTCTCAACATGGACATTTCTCCCAAAAGAAAACGGGGAAGACCTTC 538
Query 504 AGGTATTGAGATACGAGCACGGACAAAAATACGATGCTCACTTTGACTACTTTCATGACA 563
||||||||||||| |||||||| || ||||| |||||||||||||||||||| || ||||
Sbjct 539 AGGTATTGAGATATGAGCACGGTCAGAAATATGATGCTCACTTTGACTACTTCCACGACA 598
Query 564 AAGTCAACATTGTCCGTGGTGGACACCGCATAGCAACGATTCT-TATGTATCTATCCAAT 622
|||||||||||| ||||||||||||||||||||||||| |||| | ||||||| ||||||
Sbjct 599 AAGTCAACATTGCCCGTGGTGGACACCGCATAGCAACGGTTCTCT-TGTATCTGTCCAAT 657
Query 623 GTGACGAAA-GGTGGAGAAACCGTATTCCCTGATGCAGAGGTACCT-TCTCGCCGAGT-A 679
|| || ||| ||||||||||| || ||||| |||||| ||| | | |||||||| |
Sbjct 658 GTCAC-AAAGGGTGGAGAAACTGTTTTCCCCGATGCACAGG-AATTCTCTCGCCG-CTCG 714
Query 680 CTCTCTGAAAACAAAGAAGATCTTTCTGATTGTGCTAAGAGAGGAATCGCCGTGAAACC- 738
|| ||||| || ||||| ||||||||||||||||| |||| ||||||||| ||||||||
Sbjct 715 CTTTCTGAGAATAAAGACGATCTTTCTGATTGTGCAAAGAAAGGAATCGCTGTGAAACCG 774
Query 739 AAGGAAAGGGGATGCTTTGTTGTTCTTCAACCTCCACCCAGACGCAATTCCAGACCCATT 798
|| ||||||| ||||| ||||||||||||||||||| | ||||||||| |||||||| ||
Sbjct 775 AA-GAAAGGGAATGCTCTGTTGTTCTTCAACCTCCAACAAGACGCAATCCCAGACCCCTT 833
Query 799 GAGCCTTCACGGTGGATGTCCCGTGATCGAAGGAGAGAAATGGTCGGCAACAAAGTGGAT 858
||||||||||| || ||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 834 TAGCCTTCACGGAGGTTGTCCAGTGATCGAAGGAGAGAAATGGTCGGCTACTAAGTGGAT 893
Query 859 CCACGTGGACTCATTCGATAAGAT-TGTGACACCAAGC-GGAAACTGCAC-GAA-TATGC 914
|||||||||||||||||||||||| | |||||| | | || ||||| || || ||
Sbjct 894 CCACGTGGACTCATTCGATAAGATAT-TGACAC-ATGATGGTAACTGTACTGACGTAA-- 949
Query 915 ACGAGAGCTGTGAGAGATGGGCAGTTCTTGGGGAATGCACAAAGAATCCAGAGTACATGG 974
||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| ||||
Sbjct 950 ACGAGAGCTGTGAGAGATGGGCAGTGCTTGGAGAATGTGGAAAGAATCCAGAGTATATGG 1009
Query 975 TTGGAACTACAGAGCTTCCTGGCTATTGCAGGCATAGCTGTAAGGCTTGTTA 1026
|||||||| ||||| | ||||| ||||||| | ||||||||| ||||||||
Sbjct 1010 TTGGAACTCCAGAGATCCCTGGGAATTGCAGACGTAGCTGTAAAGCTTGTTA 1061
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59889250185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5