BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488776
Length=1553
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18930.1 | Symbols: BUD2, SAMDC4 | Adenosylmethionine decarb... 2204 0.0
> AT5G18930.1 | Symbols: BUD2, SAMDC4 | Adenosylmethionine decarboxylase
family protein | chr5:6311725-6313323 REVERSE LENGTH=1599
Length=1599
Score = 2204 bits (1193), Expect = 0.0
Identities = 1446/1563 (93%), Gaps = 37/1563 (2%)
Strand=Plus/Plus
Query 1 ACTACctctctcttctctctATacacacacacaaacacaTTTCCCCTG-C-T-CTGTTCT 57
|||||||||||||||||||| ||| ||||||||||||||||||| || | | | ||||
Sbjct 1 ACTACCTCTCTCTTCTCTCTCTACTCACACACAAACACATTTCCTTTGCCGTGTTCTTCT 60
Query 58 TGCAACTTCCTCTGTTCT-AATCGTAACATCTTCTTCTGATCTTTGCAATGGCAGTGTCT 116
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 61 TGCAACTTCCTCTGTTCTGTTTCATAACATCTTCTTCTGATCTTTGCAATGGCAGTGTCT 120
Query 117 GGGTTCGAGGGTTTCGAGAAAAGACTCGAACTTCGGTTCTTCGACGATGATAAACCAATC 176
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 GGGTTCGAGGGTTTCGAGAAAAGACTCGAACTTCGGTTCTTCGACGATGACAAACCAATC 180
Query 177 ACCAATAACCCTATGGGACTCCGTCTAATAGACTTCGAATCTTTAGACCAAGTCTTAAAC 236
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACCAAAAACCCTATGGGACTCCGTCTAATAGACTTCGAATCTTTAGACCAAGTCTTAAAC 240
Query 237 GAAGTACAGTGTACGGTTGTCTCCGCCGTAGCGAATCGTAGCTTCGACGCTTACGTTCTC 296
||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAGTGCAGTGCACAGTGGTCTCCGCCGTAGCGAATCGTAGCTTCGACGCTTACGTTCTC 300
Query 297 TCAGAGTCAAGCCTCTTTGTCTACCCAACAAAAATCATCATCAAAACATGTGGTACCACG 356
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 301 TCAGAGTCAAGCCTCTTTGTATACCCAACCAAAATCATCATCAAAACATGTGGAACCACG 360
Query 357 CAACTCCTCAAATCAATCCGACCGTTGATCCATCTCGCACGTAACCTCGGCCTCACGTTA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAACTCCTCAAATCAATCCGACCGTTGATCCATCTCGCACGTAACCTCGGCCTCACGTTA 420
Query 417 CGCGCGTGTCGCTACTCGCGCGGCAGCTTCATCTTCCCTAAAGCTCAGCCTTTCCCTTAC 476
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 CGCGCGTGTCGCTACTCGCGTGGCAGCTTCATCTTCCCTAAAGCTCAGCCTTTCCCTTAC 480
Query 477 ACAAGCTTCAAAGACGAAGTCATCGTCGTCGAAGAAAGCCTTCCCAAA-TCTCTCTGTTA 535
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 481 ACAAGCTTCAAAGACGAAGTCATCGTCGTCGAAGAAAGCCT-CCCAAAATCTCTCTGTTA 539
Query 536 CCGTAAAGCCTCTGTTATGACGCCTTCTAATAACCCCTCACGTGCTTGGCACGTGTTCAC 595
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 CCGCAAAGCCTCTGTTATGACGCCTTCTAATAACCCATCACGTGCTTGGCACGTGTTCAC 599
Query 596 AGCCAGCGCTGACGTGGAATCCGACGAGTCA-GTCGTTGTCGTTGAAGTATGTATGACGG 654
|| ||||||||||||||||||||||| || ||||| || || ||||||||||||||||
Sbjct 600 CGCAAGCGCTGACGTGGAATCCGACGAA-CATGTCGTCGTAGTCGAAGTATGTATGACGG 658
Query 655 AGCTCGACAGAGTCAACGCTCGGAGCTTCTTTAAACGGAAAGGCGACGAGAAAAACAATA 714
|||| ||| ||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 659 AGCTGGACCGAGTCAACGCTCGAAGCTTCTTTAAACGGAAAGGTGACGAGAAAAACAACA 718
Query 715 GTGATTCCGCAGGGAAAGAGATGACGCGGCTGAGCGGTATCGATAACATAAACGCAAACG 774
| |||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 719 GCGATTCCGCCGGGAAAGAGATGACGCGGCTCAGTGGTATCGATAACATAAACGCAAACG 778
Query 775 CGTT-TATATGCGATTTCGCGTTTGATCCTTGCGGTTACTCGATGAACGGCGTCGACGGC 833
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 C-TTATATATGCGATTTCGCGTTTGATCCTTGCGGTTACTCGATGAACGGCGTCGACGGT 837
Query 834 GACCGTTACTCAACTATCCACGTCACGCCTGAAGATGGTTTTAGCTACGCCAGCTTCGAG 893
||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 838 GACCGTTACTCAACTATCCACGTAACGCCTGAAGACGGTTTTAGCTACGCGAGCTTCGAG 897
Query 894 TGCGGTTTGTCACTATACGATGATGGTCACGAAGATATCTCTGAGGTTTTAAGCCGGGCC 953
|| |||||||| || ||||| | ||||||||||||||||||||||| ||||||||||||
Sbjct 898 TGTGGTTTGTCTCTCTACGACAACGGTCACGAAGATATCTCTGAGGTGTTAAGCCGGGCC 957
Query 954 ATTGATGTTTTCCGGCCAAGTGACGTCTCAATCGCCACCACTTACGGTGGCGAGGATTAC 1013
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 958 ATTGATGTTTTCCGTCCAAGTGACGTCTCGATCGCCACCACTTACGGCGGCGAAGATTAC 1017
Query 1014 AACCACGAGGTGACGAAGCGTGTGGAGCGCT-TGTTGGCTAAGAAGCTTGGTCTTAAGTG 1072
|||||||||||||| ||||| |||||||| | |||| ||||||||||||| |||||||||
Sbjct 1018 AACCACGAGGTGACTAAGCGCGTGGAGCG-TGTGTTAGCTAAGAAGCTTGATCTTAAGTG 1076
Query 1073 CCGAAGCCGTATTATGGATGAGTTTCCAGGCTCCGGAACCGTCGTTTATCAGTCGTTCAC 1132
|| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1077 TCGGAGCCGTCTTATGGATGAGTTTCCAGGCTCCGGAACCGTCGTTTATCAGTCCTTCAC 1136
Query 1133 GCCTCGCCGGAAATAGTCTTCGCCGGAGGAGTaaaaaacgaaaaaaaaaGGTTTTAATTA 1192
|||||| ||||||||| ||||||||||||||||||||| || |||| | |||||||||
Sbjct 1137 GCCTCGTCGGAAATAGGCTTCGCCGGAGGAGTAAAAAAGGAGAAAAT--G-TTTTAATTA 1193
Query 1193 GGTTTAAATTAGCTGAGAGGAGAAAAAAGAAACAGGTGATGACGTGGATGGAGATGATTG 1252
||||| |||||||| | |||||||||||||||||||| |||||||||| ||| |||||||
Sbjct 1194 GGTTTCAATTAGCTTAAAGGAGAAAAAAGAAACAGGTAATGACGTGGAGGGAAATGATTG 1253
Query 1253 GTTGATTTGGGTTTAAGGAGGGATAT-AAGTGGGAACATATATGATCATGCACCCCACTT 1311
||||| ||||||||||||||| |||| |||||||||||||| |||||||||||||||||
Sbjct 1254 GTTGACTTGGGTTTAAGGAGG-ATATTAAGTGGGAACATAT--GATCATGCACCCCACTT 1310
Query 1312 TGCGCTTGTGGCAATGTCACGCCTAAGCATTTTTGAGGTTCAGTGTTGTAGAATTTTAGT 1371
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 TGCACTTGTGGCAATGTCACGCCTAAGCATTTTTGAGGTTCAGTGTTGTAGAATTTTAGT 1370
Query 1372 GGGGGAGGGTAAAAATGGTTTGGTCTGtttttttgtt-tctttcttttattttctttctt 1430
|||||| ||||||||||||||||||||||||||| || |||||||||||||| ||| |||
Sbjct 1371 GGGGGATGGTAAAAATGGTTTGGTCTGTTTTTTTTTTGTCTTTCTTTTATTT-CTT-CTT 1428
Query 1431 ttcttctaatgtttgtttttatattttcaatttAAATTATCCTAAATCTCTATATCAGAC 1490
| || | |||| ||| |||||||| |||||||||||| ||||||| ||||||||||
Sbjct 1429 ATGTT-T---GTTT-TTT--ATATTTTCGATTTAAATTATCTTAAATCTATATATCAGAC 1481
Query 1491 TGTTGATATACGGTTTTAAACTTTTAATCGGTCTTACTTTATATGGTTACAAATTCATTC 1550
||||||||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 1482 TGTTGATATACGGTTTTAA--T------CGTTCTTACTTTATATGGTTACAAATTCATTC 1533
Query 1551 ACC 1553
|||
Sbjct 1534 ACC 1536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76656232215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5