BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488781
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18970.1 | Symbols: | AWPM-19-like family protein | chr5:63... 1469 0.0
> AT5G18970.1 | Symbols: | AWPM-19-like family protein | chr5:6333211-6334642
REVERSE LENGTH=1122
Length=1122
Score = 1469 bits (795), Expect = 0.0
Identities = 1033/1139 (91%), Gaps = 51/1139 (4%)
Strand=Plus/Plus
Query 1 ACAGAGATCTTGTGATTATCCCAAGACAGAACCAGAGTAAAAGACCTGTCTGGttttttt 60
|||||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||
Sbjct 1 ACAGAGATCTTGTGATCATCCCAAGACAAAACCAGAGAAAAAGACCTGTCT-GTTTTTTT 59
Query 61 AAGAAGTC-TT-TA-TAttttttttGTCGGAGAATCTTGT-AGACATGGCTTCAGGAGGA 116
|||||||| || || ||||||||||||||||||||||| | || ||||||||||||||||
Sbjct 60 AAGAAGTCTTTATATTATTTTTTTTGTCGGAGAATCTTATAAG-CATGGCTTCAGGAGGA 118
Query 117 TCAAAGTCGGCAGCTTTCATGCTTCTGATGCTGAATCTTGGTCTTTATTTCGTCGTCACT 176
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 119 TCAAAGTCGGCAGCTTTCATGCTTCTGATGCTGAATCTTGGTCTCTATTTCGTCATCACC 178
Query 177 GTCATCGCTTCATGGGCTGTTAATCACGGCATCGAGAGAACTCACGAGTCCGCGTCGACA 236
|||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 179 ATCATCGCTTCTTGGGCTGTTAATCACGGCATCGAGAGAACTCGCGAGTCTGCGTCGACA 238
Query 237 CTGTCACTTCCGGCGAAGATCTTCCCGATATACTTCCCGGTGGGGAACATGGCGACTGGT 296
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 239 CTGTCACTTCCGGCGAAGATATTCCCGATATACTTCCCGGTGGGGAACATGGCGACCGGT 298
Query 297 TTTTTCGTAATATTCACGTTGATCGCCGGCGTCGTCGGAATGGCCACATCACTCACCGGA 356
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTTTTCGTAATATTCACGTTAATCGCCGGCGTCGTCGGAATGGCCACATCACTCACCGGA 358
Query 357 ATCCTCAACGTTCTTCAGTGGGACTCTCCGAATCTCCACTCCGCCGCGGCTTCCTCTCTC 416
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ATCATCAACGTTCTTCAATGGGACTCTCCGAATCTCCACTCCGCCGCGGCTTCCTCTCTA 418
Query 417 ATATCCTGGTCTCTCACTCTCCTCGCCATGGGATTGGCCTGCAAGGAGATCAACATTGGC 476
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 419 ATCTCCTGGTCTCTCACTCTCCTCGCCATGGGATTGGCCTGCAAGGAGATCAACATAGGC 478
Query 477 TGGACCGAAGCCAATCTAAGAACTCTGGAAGTTCTGACTATAATTGTGAGTGCTACTCAG 536
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 479 TGGACCGAAGCCAATCTAAGAACTCTTGAAGTTCTGACTATAATTGTGAGTGCTACTCAG 538
Query 537 TTGGTGTGCACCGGAGCTATTCACGCTGGAGTCGGAGAAACAGTCGCCGCCGGTGAAAGG 596
||| ||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||
Sbjct 539 TTGTTGTGCACCGGAGCTATTCATGCTGGAGTCGGAGAAACAGTCGCCTCCGGAGAAAGG 598
Query 597 CCACATCTTGGGAGAGTTTGAGTTTCAAGATTCTTCTTAAAAGCGGTTTTTCATTTGCTT 656
|| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 599 CCTCATCTTGGGAGAGTTTGAGTTTCATGATTCTTCTTAAAAGCGGTTTTACATTTGCTT 658
Query 657 AAGATCgtgtaatttgtgtgctgtgtcttgtgtgtgtgtttattcttttgttttgtactg 716
||||||||||||||||||| |||||||||||||||| || ||||||||||||||| |
Sbjct 659 CAGATCGTGTAATTTGTGTGTTGTGTCTTGTGTGTGT-TT-ATTCTTTTGTTTTGT--T- 713
Query 717 tttgATTATTACGATAATGTAAAATGATTAGTTGATGTGACGaaaaaaaaaaaaaaGAGA 776
| |||||||| ||| |||||||||||||||||| ||||| ||||||||| |||| ||||
Sbjct 714 T--GATTATTATGATCATGTAAAATGATTAGTTGGTGTGAAGAAAAAAAAGAAAA-GAGA 770
Query 777 TTGATAATAATATTACACATTACATTCTTTGCTG----T-AGCATCAAACGATTTGATTC 831
|||||||||||||||||||||||||||||||| | |||||||||||||||||| |
Sbjct 771 TTGATAATAATATTACACATTACATTCTTTGCAACAACTTAGCATCAAACGATTTGATAC 830
Query 832 TCTAAACATGCATGATCTGCATCTTCTCCGCCCATTCCCaaaaaaaaaaaaaaaaaaaaa 891
|||||||||| || |||||||||| ||||||| |||||||| || ||||
Sbjct 831 TCTAAACATG-AT---CTGCATCTTCCCCGCCCACTCCCAAAATAACAAAA--------- 877
Query 892 TCCTAATTCTGATCTGTTCTCACTTTCTCAGATCTTTTGGAACAA-CA---TAAACAAAC 947
|||||||||| ||| ||||||||||||||||||| | |||||||| || |||||||||
Sbjct 878 TCCTAATTCTTATCAGTTCTCACTTTCTCAGATCCTCTGGAACAAGCAACATAAACAAAC 937
Query 948 ACACAAGAGAACGAACATGTCACCGGAAGAGTCGTCATTACTATGATGATTATCATTAGG 1007
|||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 938 ACACAAGAGAACAAACATGTCACCGGAAGCGTCGTCATTACAATGATGATTATCATTAGG 997
Query 1008 AACCACAAA-ACTCCCAC--CTCC-AC-TACCACCACCACCTCTTGCAGCGACAATGATA 1062
|||||||| || | || |||| || | |||||||||||||||||| |||| ||| ||
Sbjct 998 AACCACAATGAC-CACAAAACTCCCACCT-CCACCACCACCTCTTGCATCGACGATGTTA 1055
Query 1063 TCAAAAAGGTTAAGA--------CGGCGACCAAGACTTCATCTTCTTCAAGGGTAAAGC 1113
||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1056 TCAAAAAGGTTAAGATTAAGTAACGGCGACCAAGACTTTATCTTCTTCAAGGGTAAAGC 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54567992415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5