BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488784
Length=1424
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19000.2 | Symbols: BPM1 | BTB-POZ and MATH domain 1 | chr5:... 1301 0.0
AT3G06190.1 | Symbols: ATBPM2, BPM2 | BTB-POZ and MATH domain 2... 998 0.0
> AT5G19000.2 | Symbols: BPM1 | BTB-POZ and MATH domain 1 | chr5:6342220-6344674
FORWARD LENGTH=1705
Length=1705
Score = 1301 bits (704), Expect = 0.0
Identities = 769/800 (96%), Gaps = 5/800 (1%)
Strand=Plus/Plus
Query 67 tttttt-ttttttGGGATCCT-TGTCTTGTTGATGGGCACAACTAGGGTTTGCTCGGAGG 124
|||||| ||||||||||| || ||| ||||||||||||||||||||||| ||||||||||
Sbjct 313 TTTTTTGTTTTTTGGGAT-CTCTGTATTGTTGATGGGCACAACTAGGGTCTGCTCGGAGG 371
Query 125 TTTCTTCTGGATCTTCGAAATCGCTTAGCCAATCTCTCACGGTATCGACGTCTACCACAG 184
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 372 TTTCTTCTGGATCTTCGAAATCGCTTAGCCAATCTCTCACGGTATCGACCTCTACCACAG 431
Query 185 AAACCGTCAATGGTTTCCATGAATTCAAGATCTGCGGATACTCTCTCGCTAAAGGTGTTG 244
|||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 432 AAACAGTCAATGGTTTCCATGAATTCAAGATCTGTGGGTACTCTCTCGCTAAAGGTGTTG 491
Query 245 GTGTTGGCAAATACGTCGCTTCCGATACGTTTATGGTCGGTGGTTACTCGTGGGCAATCT 304
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 GTGTCGGCAAATACGTCGCTTCCGATACGTTTATGGTCGGTGGTTACTCGTGGGCAATCT 551
Query 305 ACTTTTACCCAGATGGGAAGAGTCCGGAGGATAACTCGTCTTACGTTTCTTTGTTCATAG 364
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 ACTTTTATCCAGATGGGAAGAGTCCGGAGGATAACTCGTCTTACGTTTCTTTGTTCATAG 611
Query 365 CTCTTGCTAGCGAAGGAGCTGATGTGAGGGCTTTGTTCGAGCTCACGCTTGTGGATCAGA 424
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 612 CTCTTGCTAGCGAAGGAGCTGATGTTAGGGCTTTGTTTGAGCTCACGCTTGTGGATCAGA 671
Query 425 GTGGTAATGGGAAGCATAAGGTTCATAGCCATTTTGGCAGAGCACTCGAGAGCGGACCAT 484
||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| || |
Sbjct 672 GTGGTAATGGGAAGCATAAGGTTCATAGCCATTTTGGTAGAGCTCTCGATAGCGGTCCCT 731
Query 485 ATACTCTCAAGTATCGTGGAAGCATGTGGGGATACAAGCGGTTTTTCAGAAGGTCCAGTC 544
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 732 ATACTCTCAAGTATCGTGGAAGCATGTGGGGATACAAGCGGTTTTTCAGGAGGTCCAGTC 791
Query 545 TAGAATCGTCGGATTATTTGAAGGAAAATAGTCTCTTGGTTAGGTGCCGTGTGGGTGTGG 604
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 792 TAGAATCGTCGGATTATTTGAAGGAGAATAGTCTCTTGGTTAGGTGCCGTGTGGGTGTGG 851
Query 605 TGAAGTCAGTTACGGAGGGACCAAGGTATTACAATATCCCTGTCCCAGTCTCTAACTTGG 664
|||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 852 TGAAGTCAGTTACGGAGGGACCGAGGTATTACAATATCCCTGTGCCAGTTTCTAACTTGG 911
Query 665 GACAACAGTTGGGAAATCTT-TTGGAAAGTGGGAAAGGCTGTGATGTTATTTTCCAACTT 723
||||||||||||||||| || ||||| ||||||||||||||||||||| |||||||| ||
Sbjct 912 GACAACAGTTGGGAAAT-TTATTGGAGAGTGGGAAAGGCTGTGATGTTGTTTTCCAAGTT 970
Query 724 GATGGAGAAACCTTCAACGCACACAAATTGGTTCTTGCGACGCGTTCCCCGGTTTTCAAG 783
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 971 GATGGAGAAACCTTCAACGCACACAAATTGGTTCTTGCAACGCGTTCCCCGGTTTTCAAC 1030
Query 784 GCACAGCTTTTTGGCCCTTTAGGAGACCGAAATACGAAATGCATAACGATAGAAGACATG 843
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1031 GCACAGCTTTTTGGCCCTTTAGGAGACCGAAATACCAAATGCATAACGATAGAAGACATG 1090
Query 844 GAAGCACCCATTTTCAAGGT 863
||||||||||||||||||||
Sbjct 1091 GAAGCACCCATTTTCAAGGT 1110
Score = 791 bits (428), Expect = 0.0
Identities = 473/495 (96%), Gaps = 2/495 (0%)
Strand=Plus/Plus
Query 859 AAGGTATTGCTCCATTTTATCTACTGGGACGAATTGCCTGATATGCAAGAGTTAATGGGC 918
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1211 AAGGTATTGCTCCATTTTATCTACTGGGACGAATTGCCTGATATGCAAGAGTTAATAGGA 1270
Query 919 ACGGACTCTACATTGGCGTCTACTCTTGTGGCTCAGCATCTGCTTGCAGCGGCAGACCGT 978
|| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1271 ACAGACTCTACATTGGCGTCTACTCTTGTGGCTCAGCATCTACTAGCAGCGGCAGACCGT 1330
Query 979 TATGCTCTTGAGCGGCTTAAAGCTATCTGTGAGTCAAAACTCTGTGAAGGGGTCGCCATA 1038
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1331 TATGCTCTTGAGCGGCTTAAAGCAATCTGTGAGTCAAAACTCTGTGAAGGGGTTGCCATA 1390
Query 1039 AACACGGTTGCAACTACCTTGGCACTAGCAGAGCAGCATCATTGTTTCCAGCTAAAAGCA 1098
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1391 AACACGGTTGCAACTACTTTGGCCCTAGCAGAGCAGCATCATTGTTTGCAGCTAAAAGCA 1450
Query 1099 GTTTGTCTCAAATTTGTGGCACTGCCAAAGAACCTGAAAGATGTGATGCACACAGATGGG 1158
|| ||||||||||| |||||||||||| |||||||||||| ||||||||| |||||||||
Sbjct 1451 GTGTGTCTCAAATTCGTGGCACTGCCAGAGAACCTGAAAGCTGTGATGCAAACAGATGGG 1510
Query 1159 TTTGATTATCTGAAAGAGAGTTGCCCATCTTTACTAACGGAGCTATTGGAGTATGTGGCG 1218
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1511 TTTGATTATCTGAAAGAGAGTTGCCCATCTTTACTAACGGAGCTATTGCAGTATGTGGCG 1570
Query 1219 AGGCTGAGTGAACACTCTGTTATAGCATCTGGACATCGAAAAGAAATATTTGCCGATGGT 1278
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1571 AGGCTAAGTGAACACTCTGTTATAGTATCTGGACATCGAAAAGAAATATTTGCCGATGGT 1630
Query 1279 TGTGATGCGAGTGGTAGACGAGTGAAGCCCCGGTTGCACTGAATGGGAGAGA--GAAGAA 1336
||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1631 TGTGACGCGAGTGGAAGACGAGTGAAGCCCCGGTTGCACTGAATGGGAGAGAAAGAAGAA 1690
Query 1337 AGATTTGTGCATTGT 1351
|||||||||||||||
Sbjct 1691 AGATTTGTGCATTGT 1705
> AT3G06190.1 | Symbols: ATBPM2, BPM2 | BTB-POZ and MATH domain
2 | chr3:1874291-1876913 REVERSE LENGTH=1845
Length=1845
Score = 998 bits (540), Expect = 0.0
Identities = 1031/1262 (82%), Gaps = 58/1262 (5%)
Strand=Plus/Plus
Query 80 GGATCCTTGTC-TTG-TTGATGGGCACAACTAGGGTTTGCTCGGAGGTTTCTTCTGGATC 137
|||| || ||| ||| ||||||| ||||| |||||||| | ||||| ||| |||||||
Sbjct 321 GGAT-CTCGTCTTTGTTTGATGGACACAATTAGGGTTTCCAAGGAGG-TTC--CTGGATC 376
Query 138 TTCGAAATCGCTTAGC-CAATCTCTCACGGTA-TCGACGTCTAC-CACAGAAACCGTCAA 194
|||||||||| || || || ||||||| | ||||| ||| | ||| |||||| ||||
Sbjct 377 TTCGAAATCG-ACCGCACAGTCGCTCACGG-AGTCGACCTCT-CGCACGGAAACCATCAA 433
Query 195 TGGTTTCCATGAATTCAAGATCTGCGGATACTCTCTCGCT-AAAGGTGTTGGTG-TTGGC 252
||| | ||| |||||||||||| |||| |||||| | | | ||||| ||| | |||||
Sbjct 434 TGGCTCCCACGAATTCAAGATCAGCGGCTACTCT-TTGGTCAAAGG-CATGGGGATTGGC 491
Query 253 AAATACGTCGCTTCCGATACGTTT-ATGGTCGGTGGTTACTCGTGGGCAATCTACTTTTA 311
|||||||| || || ||||| ||| ||||||||||| ||||| ||||| |||||||| ||
Sbjct 492 AAATACGTTGCCTCGGATAC-TTTCATGGTCGGTGGATACTCCTGGGCCATCTACTTCTA 550
Query 312 CCCAGATGGGAAGAGTCCGGAGGATAACTC-GTCTTACGTTTCTTTGTTCATAGCTCTTG 370
||||||||| |||||||| |||||||| || ||| ||||| ||| | |||||||| ||||
Sbjct 551 CCCAGATGGAAAGAGTCCAGAGGATAATTCTGTC-TACGTGTCTCTCTTCATAGCCCTTG 609
Query 371 CTAGCGAAGGAGCTGATGTGAGGGCTTTGTTCGAGCTCACGCTTGTGGATCAGAGTGGTA 430
| || |||||||| ||||| ||||||||||| ||||| || || ||||||||||| ||||
Sbjct 610 CGAGTGAAGGAGCCGATGTTAGGGCTTTGTTTGAGCTTACCCTCGTGGATCAGAGCGGTA 669
Query 431 ATGGGAA-GCATAAGGTTCATAGCCATTTTGGCAGAGCACTCGAGAGCGGACCATATACT 489
| | || ||| || ||||||||||||||||| ||| | ||||| |||||||| ||||||
Sbjct 670 A-CGAAAGGCACAAAGTTCATAGCCATTTTGGTAGAACTCTCGAAAGCGGACCCTATACT 728
Query 490 CTCAAGTATCGTGGAAGCATGTGGGGATACAAGCGGTTTTTC-AGAAGGTC-CAGTCTAG 547
|| || ||||| || || |||||||||||||| || |||||| || ||||| | | | |
Sbjct 729 CTTAAATATCGAGGGAGTATGTGGGGATACAAACGATTTTTCAAG-AGGTCTC-TTTTGG 786
Query 548 AATCGTCGGATTATTTGAAGGAAAATAGTCTCTTGGTTAGGTGCCGTGTGGGTGTGGTGA 607
| || ||||| ||| ||||||| ||| |||||||||| |||| |||| || |||||||
Sbjct 787 AGTCATCGGACTATCTGAAGGACAATGGTCTCTTGGTCCGGTGTTGTGTTGGAGTGGTGA 846
Query 608 AGTCA-GTTACGGAGGGACCAAGGTATTACAATATCCCTGTCCCAGTCTCTAACTTGGGA 666
||||| | || || ||||| |||| |||||||||||| || || || ||| ||||||
Sbjct 847 AGTCACG-CACAGAAGGACCGAGGTGTTACAATATCCCGGTGCCGGTTTCTGGCTTGGGT 905
Query 667 CAACAGTTGGGAAATCTTTTGGAAAGTGGGAAAGGCTG-TGATGTTATTTTCCAACTTGA 725
|| ||||| ||||| |||||||||||||||||||| | ||| |||| |||| || ||||
Sbjct 906 CAGCAGTTTGGAAAGCTTTTGGAAAGTGGGAAAGG-AGCTGACGTTACTTTCGAAGTTGA 964
Query 726 TGGAGAAAC-CTTCAAC-GCACACAAATTGGTTCTTGCGA-CGCGTTCCCCGGTTTTCAA 782
||||||||| ||| | || ||||||||||||||||| | | ||||| | |||||||
Sbjct 965 TGGAGAAACATTTC--CTGCTCACAAATTGGTTCTTGC-AGCACGTTCTGCAGTTTTCAG 1021
Query 783 GGCACAGCTTTTTGGCCC-TTTAGGAGACCG-AAATACGAAATGCATAA-CGATAGAAGA 839
|||||||||||||||||| || | || | | |||||| || || |||| | ||||||||
Sbjct 1022 GGCACAGCTTTTTGGCCCGTTGA-GA-AGTGAAAATACCAATTGTATAATC-ATAGAAGA 1078
Query 840 CATGGAAGCACCC-ATTTTCAAGGTATTGCTCCATTTTATCTACTGGGACGAATTGCCTG 898
| | |||| ||| ||||||||| | ||||| ||||||||||||||||| ||| ||||||
Sbjct 1079 CGTACAAGC-CCCTATTTTCAAGATGTTGCTTCATTTTATCTACTGGGATGAAATGCCTG 1137
Query 899 ATATGCAAGAGTTAATGGGCACGGACTCT-ACATTGGCGTCTACTCTTGTGGCTCAGCAT 957
|||||||||| ||||| ||||| |||| | | || ||| || ||||||||||||||||||
Sbjct 1138 ATATGCAAGACTTAATCGGCACAGACT-TGAAATGGGCATCAACTCTTGTGGCTCAGCAT 1196
Query 958 CTGCTTGCAGCGGCAGACCGTTATGCTCTTGAGCGGCTTA-AAGCTATCTGTGAGTCAAA 1016
||||||||||| |||||||||||||||||||||||||||| || | || || ||||||||
Sbjct 1197 CTGCTTGCAGCTGCAGACCGTTATGCTCTTGAGCGGCTTAGAA-CAATATGCGAGTCAAA 1255
Query 1017 ACTCTGTGAAGGGGTC-GCCATAAACACGGTTGCAACTACCTTGGCACTAGCAGAGCAGC 1075
|||||||||||| || || ||||| ||||| ||||| |||||||| || ||||||||||
Sbjct 1256 ACTCTGTGAAGGAATCAGC-ATAAATACGGTAGCAACCACCTTGGCTCTTGCAGAGCAGC 1314
Query 1076 ATCATTGTTTCCAGCTAAAAGCAGTTTGTCTCAAATTTGTGGCACTGCCA-AAGAACCTG 1134
|||||||||||||||| ||||| | || ||||||||| | || ||||| || ||||||
Sbjct 1315 ATCATTGTTTCCAGCTGAAAGCCGCCTGCCTCAAATTTATAGCTTTGCCAGAA-AACCTG 1373
Query 1135 AAAGATGTGATGCACACAGATGGGTTTGATTATCTGAAAGAGAGTTGCCCATCTTTACTA 1194
|||| ||||||| | || |||||||||||||||||||| || || ||||| || |||||
Sbjct 1374 AAAGCTGTGATGGAAACGGATGGGTTTGATTATCTGAAGGAAAGCTGCCCGTCCCTACTA 1433
Query 1195 ACG-GAGCTATTGGAGTATGTGGCGAGGCTGAGTGAACACTCTGTTAT-AGCATCTGGAC 1252
| | |||||||||||||||||||| ||||||||||| |||||| ||| | |||| || |
Sbjct 1434 A-GTGAGCTATTGGAGTATGTGGCTAGGCTGAGTGAGCACTCT-TTAACATCATCAGGGC 1491
Query 1253 ATCGAAAAGAAATATTTGCCGATGGTTGTGA-TGCGAGTGGTAGACGAGTGAAGCCCCGG 1311
||||||| || ||||||| ||||||||||| | | ||| ||||| ||||||| |||
Sbjct 1492 ATCGAAAGGAGTTATTTGCTGATGGTTGTGACTTAAA-TGGGAGACGTGTGAAGCAACGG 1550
Query 1312 TT 1313
||
Sbjct 1551 TT 1552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70180361910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5